feat(arch): implement 'Code as Thought' architecture and formalize PSF Consensus Loop

daily/2026-03-30.org

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+#+TITLE: System Migration Status (2026-03-30)
+#+ID: system-migration-status-2026-03-30
+#+FILETAGS: :system:migration:emacs:gtd:psf:
+#+STARTUP: content
+
+* Overview
+This session focused on three critical architectural upgrades: modularizing the Emacs configuration, migrating to `org-gtd` v4.0, and operationalizing the Personal Software Foundry (PSF).
+
+* Accomplishments
+
+** 1. Emacs Modularization ([[file:modular-emacs-configuration.org][Modular Emacs Configuration]])
+- **New Structure:** Configuration moved from monolithic `emacs.org` to domain-specific modules in `~/memex/system/`.
+- **Bootstrap Fix:** `~/.emacs` rewritten as a robust bootstrap that prioritizes the newer Org-mode version from `straight.el` to prevent version mismatches.
+- **Path Normalization:** All `org-directory`, `org-roam`, and capture paths standardized to `~/memex/`.
+- **Literate Mandate:** All modular files (`emacs-*.org`) are the source of truth, tangling locally to `.el` files.
+
+** 2. org-gtd v4.0 Migration ([[file:org-gtd-v4-migration.org][org-gtd v4.0 Migration]])
+- **DAG Implementation:** Successfully ran `org-gtd-upgrade-v3-to-v4`.
+- **Database Partitioning:** To handle context limits and prevent crashes, massive legacy blocks were moved to separate inbox files:
+  - `inbox-rotten-uri.org` (3,048 items)
+  - `inbox-web-bookmarks.org` (733 items)
+  - `inbox-atoms.org` (Deeply nested items)
+  - `inbox-emacs.org` (336 items)
+  - `inbox-posts.org` (Legacy web content)
+- **Shadow Orchestration:** Integrated `:PSF-STATE:` properties into `gtd.org` for engineering lifecycle tracking.
+
+** 3. PSF Operationalization ([[file:personal-software-foundry.org][Personal Software Foundry]])
+- **Mandates:** Codified Lisp Machine Sovereignty, Org Mandate, and Literate Programming.
+- **Skill Upgrade:** `skill-project-foundry.org` now scaffolds full SDLC structures (`src/`, `tests/`, `docs/`, `PRD.org`, `PROTOCOL.org`).
+- **Audit Loop:** `Scribe-Agent.org` updated to audit workspace compliance.
+
+* Current System State
+- **Emacs:** Stable, running Org 10.0-pre, modularized.
+- **GTD:** v4.0 Active. Main file `org-gtd-tasks.org` shrunk to ~40k lines.
+- **PSF:** Phase 1 (Foundations) Complete.
+
+* Pending Actions (Phase 2)
+1. **Resolve Encoding:** Fix encoding issues in the new `inbox-*.org` files.
+2. **Architect Skill:** Implement `skill-architect.org` to automate `PROTOCOL.org` generation.
+3. **Analyst Skill:** Implement `skill-tech-analyst.org` for automated TDD inception.
+
+* See Also
+- [[file:personal-software-foundry.org][Personal Software Foundry (Philosophy)]]
+- [[file:institutional-memory.org][Institutional Memory (Learnings)]]
+- [[file:modular-emacs-configuration.org][Emacs Architecture]]

daily/2026-03-31.org

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+#+TITLE: Daily Log: 2026-03-31
+#+ID: daily-2026-03-31
+#+FILETAGS: :daily:refactor:psf:architecture:
+
+* Overview
+Today saw the complete architectural transformation of the Memex into a high-integrity **Personal Software Foundry** (PSF) following the "Code as Thought" mandate.
+
+* Accomplishments
+** 1. Knowledge Management Integrity
+- **Inbox Partitioning Cleanup:** Verified and marked encoding issues as DONE for the newly partitioned inbox files.
+- **Metadata Audit:** Performed a systematic audit of ~1,300 entries missing the mandatory :CREATED: property; recorded this as a high-priority task for the KM Standards project.
+
+** 2. "Code as Thought" Architecture
+- **Skill Formalization:** Successfully refactored all 33 agent skills into **Universal Literate Notes**.
+- **Unified Source of Truth:** Moved literate Org sources (PRD, PROTOCOL, IMPLEMENTATION) into `notes/` using kebab-case filenames (e.g., `notes/org-skill-memex-manager.org`).
+- **Material Realization:** Established standard PSF project folders in `projects/` for tangled source code, tests, and documentation.
+- **System Actuation:** Replaced all hard-coded skill files in `system/skills/` with symbolic links to the unified notes, ensuring real-time execution of literate thoughts.
+
+** 3. PSF Consensus Loop Implementation
+- **Formalized Roles:** Established dedicated projects for the core PSF roles:
+  - *Architect Agent:* Transforming Demand into Blueprint.
+  - *Technical Analyst Agent:* Transforming Blueprint into Success (TDD).
+  - *Project Foundry Agent:* Scaffolding high-integrity workspaces.
+  - *Scribe Agent:* Automated distillation and mandate auditing.
+
+* Current System State
+- **Architecture:** 100% PSF Compliant (Literate, Kebab-case, Lisp-native state).
+- **Git Status:** All refactors staged for final commit.
+- **Next Steps:** Implement automated metadata repair logic and further neural-symbolic loop closures.