feat(xdg): implement xdg-compliant directory structure and diagnostic doctor

inbox.org

@@ -199,3 +199,115 @@ This is the inbox. Everything goes in here when you capture it.
 :CREATED: [2026-04-21 Tue 15:27]
 :END:
 
+*  [[https://arxiv.org/html/2603.21852v2][All elementary functions from a single operator]]
+:PROPERTIES:
+:TITLE: All elementary functions from a single operator
+:URI: https://arxiv.org/html/2603.21852v2
+:CREATED: [2026-04-26 Sun 11:05]
+:END:
+
+*  [[https://github.com/abhigyanpatwari/GitNexus][abhigyanpatwari/GitNexus: GitNexus: The Zero-Server Code Intelligence Engine - GitNexus is a client-side knowledge graph creator that runs entirely in your browser. Drop in a GitHub repo or ZIP file, and get an interactive knowledge graph wit a built in Graph RAG Agent. Perfect for code exploration]]
+:PROPERTIES:
+:TITLE: abhigyanpatwari/GitNexus: GitNexus: The Zero-Server Code Intelligence Engine - GitNexus is a client-side knowledge graph creator that runs entirely in your browser. Drop in a GitHub repo or ZIP file, and get an interactive knowledge graph wit a built in Graph RAG Agent. Perfect for code exploration
+:URI: https://github.com/abhigyanpatwari/GitNexus
+:CREATED: [2026-04-26 Sun 11:05]
+:END:
+
+*  [[https://medium.com/@fzbcwvv/an-overnight-stack-for-qwen3-6-27b-85-tps-125k-context-vision-on-one-rtx-3090-0d95c6291914][An Overnight Stack for Qwen3.6–27B: 85 TPS, 125K Context, Vision — on One RTX 3090 | Medium]]
+:PROPERTIES:
+:TITLE: An Overnight Stack for Qwen3.6–27B: 85 TPS, 125K Context, Vision — on One RTX 3090 | Medium
+:URI: https://medium.com/@fzbcwvv/an-overnight-stack-for-qwen3-6-27b-85-tps-125k-context-vision-on-one-rtx-3090-0d95c6291914
+:CREATED: [2026-04-26 Sun 11:06]
+:END:
+
+*  [[https://x.com/i/status/2047124337191444844][Shiv on X: "A new way to think about composing skills to increase leverage: Skill Graphs 2.0" / X]]
+:PROPERTIES:
+:TITLE: Shiv on X: "A new way to think about composing skills to increase leverage: Skill Graphs 2.0" / X
+:URI: https://x.com/i/status/2047124337191444844
+:CREATED: [2026-04-26 Sun 16:34]
+:END:
+
+*  [[https://x.com/i/status/2047558951303028855][Eric ⚡️ Building... on X: "My 4090 went from 26 -> 154 tok/s Qwen 3.6 27B🤯 Same GPU. Same Q4_K_M . No FP8, no extra quant. The unlock: ik_llama.cpp + speculative decoding using Qwen3-1.7B as the draft model. 85% acceptance rate. Full config + benchmarks 👇🏻 https://t.co/NUZec2Y7J0" / X]]
+:PROPERTIES:
+:TITLE: Eric ⚡️ Building... on X: "My 4090 went from 26 -> 154 tok/s Qwen 3.6 27B🤯 Same GPU. Same Q4_K_M . No FP8, no extra quant. The unlock: ik_llama.cpp + speculative decoding using Qwen3-1.7B as the draft model. 85% acceptance rate. Full config + benchmarks 👇🏻 https://t.co/NUZec2Y7J0" / X
+:URI: https://x.com/i/status/2047558951303028855
+:CREATED: [2026-04-26 Sun 16:34]
+:END:
+
+*  [[https://x.com/i/status/2047033293460410638][Sudo su on X: "for anyone running along, here is the setup. weights from unsloth: https://t.co/b89HJ2JC5O launched with: ./llama-server -m Qwen3.6-27B-Q4_K_M.gguf -ngl 99 -c 262144 -np 1 -fa on --cache-type-k q4_0 --cache-type-v q4_0 same exact flags that held the 3.5 dense baseline at 35.3" / X]]
+:PROPERTIES:
+:TITLE: Sudo su on X: "for anyone running along, here is the setup. weights from unsloth: https://t.co/b89HJ2JC5O launched with: ./llama-server -m Qwen3.6-27B-Q4_K_M.gguf -ngl 99 -c 262144 -np 1 -fa on --cache-type-k q4_0 --cache-type-v q4_0 same exact flags that held the 3.5 dense baseline at 35.3" / X
+:URI: https://x.com/i/status/2047033293460410638
+:CREATED: [2026-04-26 Sun 16:34]
+:END:
+
+*  [[https://x.com/i/status/2046898117241635240][Hasan Toor on X: "Goodbye Claude Code subscription fees. Someone just built a proxy that runs Claude Code completely free... and it's wild. You literally plug in a free NVIDIA API key and point Claude Code at localhost. That's it. It handles everything: - Converts Anthropic API calls to NVIDIA https://t.co/10v4KdymxH" / X]]
+:PROPERTIES:
+:TITLE: Hasan Toor on X: "Goodbye Claude Code subscription fees. Someone just built a proxy that runs Claude Code completely free... and it's wild. You literally plug in a free NVIDIA API key and point Claude Code at localhost. That's it. It handles everything: - Converts Anthropic API calls to NVIDIA https://t.co/10v4KdymxH" / X
+:URI: https://x.com/i/status/2046898117241635240
+:CREATED: [2026-04-26 Sun 16:34]
+:END:
+
+*  [[https://x.com/i/status/2047295369583964385][Graeme on X: "The Local LLM Cheat Sheet for Your 64GB RAM Device We covered 16GB and 32GB already, and 64GB has been the next big request, which I can understand, because this is where things get very interesting. Here's the practical cheat sheet for a 64GB RAM machine for code, math, https://t.co/ohgkjbU0LK" / X]]
+:PROPERTIES:
+:TITLE: Graeme on X: "The Local LLM Cheat Sheet for Your 64GB RAM Device We covered 16GB and 32GB already, and 64GB has been the next big request, which I can understand, because this is where things get very interesting. Here's the practical cheat sheet for a 64GB RAM machine for code, math, https://t.co/ohgkjbU0LK" / X
+:URI: https://x.com/i/status/2047295369583964385
+:CREATED: [2026-04-26 Sun 16:34]
+:END:
+
+*  [[https://github.com/codejunkie99/agentic-stack][codejunkie99/agentic-stack: One brain, many harnesses. Portable .agent/ folder (memory + skills + protocols) that plugs into Claude Code, Cursor, Windsurf, OpenCode, OpenClaw, Hermes, or DIY Python — and keeps its knowledge when you switch.]]
+:PROPERTIES:
+:TITLE: codejunkie99/agentic-stack: One brain, many harnesses. Portable .agent/ folder (memory + skills + protocols) that plugs into Claude Code, Cursor, Windsurf, OpenCode, OpenClaw, Hermes, or DIY Python — and keeps its knowledge when you switch.
+:URI: https://github.com/codejunkie99/agentic-stack
+:CREATED: [2026-04-27 Mon 09:23]
+:END:
+
+*  [[https://github.com/public-apis/public-apis][public-apis/public-apis: A collective list of free APIs]]
+:PROPERTIES:
+:TITLE: public-apis/public-apis: A collective list of free APIs
+:URI: https://github.com/public-apis/public-apis
+:CREATED: [2026-04-27 Mon 09:23]
+:END:
+
+*  [[https://github.com/stanford-iris-lab/meta-harness][stanford-iris-lab/meta-harness: Reference code for the Meta-Harness paper.]]
+:PROPERTIES:
+:TITLE: stanford-iris-lab/meta-harness: Reference code for the Meta-Harness paper.
+:URI: https://github.com/stanford-iris-lab/meta-harness
+:CREATED: [2026-04-27 Mon 09:23]
+:END:
+
+*  [[https://github.com/thePM001/AEP-agent-element-protocol/tree/main][thePM001/AEP-agent-element-protocol: AEP (Agent Element Protocol) v2.5 | Deterministic zero-trust total control and governance protocol for AI agents. | Reduce hallucinations to zero through architecure in all constrained domains of application. | LLMs gave you the engines, AEP gives you the control for the thrusters.]]
+:PROPERTIES:
+:TITLE: thePM001/AEP-agent-element-protocol: AEP (Agent Element Protocol) v2.5 | Deterministic zero-trust total control and governance protocol for AI agents. | Reduce hallucinations to zero through architecure in all constrained domains of application. | LLMs gave you the engines, AEP gives you the control for the thrusters.
+:URI: https://github.com/thePM001/AEP-agent-element-protocol/tree/main
+:CREATED: [2026-04-27 Mon 09:24]
+:END:
+
+*  [[https://x.com/i/status/2048381278953603406][GREG ISENBERG on X: "agreed that the the modern computer probably has to be reinvented 12 "tiny" startup ideas that ride that wave: 1. a "where did I put that" app. you describe what you're looking for in plain english and it searches across every app, folder, email, and slack message you've ever" / X]]
+:PROPERTIES:
+:TITLE: GREG ISENBERG on X: "agreed that the the modern computer probably has to be reinvented 12 "tiny" startup ideas that ride that wave: 1. a "where did I put that" app. you describe what you're looking for in plain english and it searches across every app, folder, email, and slack message you've ever" / X
+:URI: https://x.com/i/status/2048381278953603406
+:CREATED: [2026-04-27 Mon 09:24]
+:END:
+
+*  [[https://github.com/iptv-org/awesome-iptv][iptv-org/awesome-iptv: A curated list of resources related to IPTV]]
+:PROPERTIES:
+:TITLE: iptv-org/awesome-iptv: A curated list of resources related to IPTV
+:URI: https://github.com/iptv-org/awesome-iptv
+:CREATED: [2026-04-27 Mon 09:24]
+:END:
+
+*  [[https://github.com/iptv-org/iptv][iptv-org/iptv: Collection of publicly available IPTV channels from all over the world]]
+:PROPERTIES:
+:TITLE: iptv-org/iptv: Collection of publicly available IPTV channels from all over the world
+:URI: https://github.com/iptv-org/iptv
+:CREATED: [2026-04-27 Mon 09:25]
+:END:
+
+*  [[https://github.com/iptv-org/epg][iptv-org/epg: Utilities for downloading the EPG (Electronic Program Guide) for thousands of TV channels from hundreds of sources.]]
+:PROPERTIES:
+:TITLE: iptv-org/epg: Utilities for downloading the EPG (Electronic Program Guide) for thousands of TV channels from hundreds of sources.
+:URI: https://github.com/iptv-org/epg
+:CREATED: [2026-04-27 Mon 09:25]
+:END:
+

notes/v1-0-skill-audit-track.org

@@ -1,166 +0,0 @@
-#+TITLE: AUDIT: V1.0 Comprehensive Core Skill Audit
-#+AUTHOR: Gemini CLI (Agent)
-#+DATE: [2026-04-09 Thu]
-#+FILETAGS: :audit:kernel:psf:
-#+STARTUP: overview
-
-* Overview
-This audit systematically reviews the 39 core skills of the OpenCortex for compliance with the V1.0 standards:
-1. **Safety:** Prevention of code injection, proper sandboxing, and actuator safety.
-2. **Merkle-Tree Integration:** Proper use of the native Lisp Merkle-Tree versioning for undo/rollback.
-3. **Core Invariants:** Adherence to Sovereignty, Mastery, Zero-Bloat, Transparency, and Sustainability.
-
-* Audit Progress [6/28]
-** DONE org-skill-agent.org [X]
-   - COMPLIANT: Correctly defines and enforces Core Invariants.
-   - SAFETY: High. Implements baseline symbolic gating.
-   - MERKLE: N/A (Read-only/Policy only).
-** DONE org-skill-llm-gateway.org [X]
-   - COMPLIANT: Consolidates 6 providers into a single high-integrity gate.
-   - SAFETY: HIGH. Fixed URL key leaks, standardized headers, and centralized credential masking.
-   - MERKLE: N/A (Stateless dispatch).
-** DONE org-skill-credentials-vault.org [X]
-   - COMPLIANT: Unified high-security enclave for API keys and cookies.
-   - SAFETY: HIGH. Mandatory credential masking in logs and secure Object Store persistence.
-   - MERKLE: COMPLIANT. Setting secrets triggers Merkle snapshots.
-** DONE org-skill-homoiconic-memory.org [X]
-   - COMPLIANT: Unified grammar, bridge, and normalization.
-   - SAFETY: HIGH. recursive AST walker for ID injection and structural validation.
-   - MERKLE: COMPLIANT. Normalization occurs during ingest/save, which are Merkle-versioned events.
-** DONE org-skill-state-persistence.org [X]
-   - COMPLIANT: Unified local SBCL image dumps with decentralized IPFS checkpointing.
-   - SAFETY: HIGH. Implements safe restoration paths and credential masking.
-   - MERKLE: COMPLIANT. This is the primary persistence layer for the Merkle-Tree object store.
-** DONE org-skill-event-orchestrator.org [X]
-   - COMPLIANT: Unified Cron, Hooks, and Routing into a single central control unit.
-   - SAFETY: HIGH. Implements error isolation for automated tasks and hooks.
-   - MERKLE: COMPLIANT. Registering hooks or tasks triggers Merkle snapshots.
-** DONE org-skill-cron.org [X] (CONSOLIDATED -> org-skill-event-orchestrator.org)
-** DONE org-skill-hook-manager.org [X] (CONSOLIDATED -> org-skill-event-orchestrator.org)
-** DONE org-skill-router.org [X] (CONSOLIDATED -> org-skill-event-orchestrator.org)
-** DONE org-skill-memory-archivist.org [X] (CONSOLIDATED -> org-skill-state-persistence.org)
-** DONE org-skill-object-store-persistence.org [X] (CONSOLIDATED -> org-skill-state-persistence.org)
-** DONE org-skill-ast-normalization.org [X] (CONSOLIDATED -> org-skill-homoiconic-memory.org)
-** DONE org-skill-org-json-bridge.org [X] (CONSOLIDATED -> org-skill-homoiconic-memory.org)
-** DONE org-skill-org-mode.org [X] (CONSOLIDATED -> org-skill-homoiconic-memory.org)
-** DONE org-skill-auth-api-key.org [X] (CONSOLIDATED -> org-skill-credentials-vault.org)
-** DONE org-skill-auth-google-oauth.org [X] (CONSOLIDATED -> org-skill-credentials-vault.org)
-** DONE org-skill-provider-anthropic.org [X] (CONSOLIDATED -> org-skill-llm-gateway.org)
-** DONE org-skill-provider-gemini.org [X] (CONSOLIDATED -> org-skill-llm-gateway.org)
-** DONE org-skill-provider-groq.org [X] (CONSOLIDATED -> org-skill-llm-gateway.org)
-** DONE org-skill-provider-ollama.org [X] (CONSOLIDATED -> org-skill-llm-gateway.org)
-** DONE org-skill-provider-openai.org [X] (CONSOLIDATED -> org-skill-llm-gateway.org)
-** DONE org-skill-provider-openrouter.org [X] (CONSOLIDATED -> org-skill-llm-gateway.org)
-** DONE org-skill-chaos.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Sovereignty Violation)
-   - ISSUE: Lacks an "Active Production" gate to prevent accidental chaos during real work. No Merkle-Tree checkpoints before/after stress tests to allow for full-system rollback.
-   - SAFETY: MEDIUM (Adversarial by design, but ungated).
-   - MERKLE: FAILED.
-** DONE org-skill-chat.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Technical Mastery Violation)
-   - ISSUE: Uses `read-from-string` on unverified LLM output, risking reader macro injection. No Merkle-Tree integration for chat history persistence or rollbacks.
-   - SAFETY: LOW (Vulnerable to injection).
-   - MERKLE: FAILED.
-** DONE org-skill-consensus.org [X]
-   - STATUS: COMPLIANT (Consolidated -> Task Orchestrator)
-   - SAFETY: HIGH. Verified via parallel multi-backend consensus in neuro.lisp.
-   - MERKLE: COMPLIANT.
-** DONE org-skill-context-manager.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for context stack snapshots or rollbacks.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-delegation.org [X]
-   - STATUS: COMPLIANT (Consolidated -> Task Orchestrator)
-   - SAFETY: HIGH. Integrated consensus gate and delegation hooks in core.lisp.
-   - MERKLE: COMPLIANT.
-** DONE org-skill-environment-config.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Technical Mastery Violation)
-   - ISSUE: No validation or authorization gating for configuration changes. Direct hash-table modification skips the new Merkle-Tree versioning system in the Object Store.
-   - SAFETY: MEDIUM (Risk of misconfiguration).
-   - MERKLE: FAILED.
-** DONE org-skill-formal-verification.org [X]
-   - STATUS: COMPLIANT
-   - ISSUE: Implemented Lisp-Native Symbolic Prover for security invariants.
-   - SAFETY: HIGH. Implements path-confinement and no-network-exfil.
-   - MERKLE: COMPLIANT.
-** DONE org-skill-function-calling.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for recording and rolling back tool-use history or state.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-inbound-gateway.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for recording and rolling back inbound message history or state.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-inbox-processor.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Technical Mastery Violation)
-   - ISSUE: Physical move logic is a "Simulation". No implementation of actual file refactoring. No Merkle-Tree integration for recording or rolling back inbox-related state changes.
-   - SAFETY: MEDIUM (Simulation only).
-   - MERKLE: FAILED.
-** DONE org-skill-latent-reflection.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Technical Mastery Violation)
-   - ISSUE: No validation or authorization gating for reflected state changes. Random sampling is inefficient. No Merkle-Tree integration for recording or rolling back reflected state changes.
-   - SAFETY: MEDIUM (Risk of unintended modifications).
-   - MERKLE: FAILED.
-** DONE org-skill-lisp-machine-bootstrap.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for recording or rolling back bootstrap-related state changes or ISA simulation history.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-log-aggregator.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for recording or rolling back log-related state changes or observability history.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-memex.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for recording or rolling back memex-related state changes or metadata audits.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-model-explorer.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code or blueprint. The skill is only a title and overview. No Merkle-Tree integration for model discovery or state changes.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-onboarding.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for recording or rolling back onboarding-related state changes or environment calibration.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-lisp-validator.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Technical Mastery Violation)
-   - ISSUE: No validation or authorization gate for dynamic symbol registration. No Merkle-Tree integration for recording or rolling back safety-related state changes or verification history.
-   - SAFETY: HIGH (The core of the system's safety).
-   - MERKLE: FAILED.
-** DONE org-skill-self-fix.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Technical Mastery Violation)
-   - ISSUE: No validation or authorization gate for proposed self-fixes. Fixes are applied directly to files. No Merkle-Tree integration for recording or rolling back self-fix-related state changes or repair history.
-   - SAFETY: LOW (Risk of unintended/malicious modifications).
-   - MERKLE: FAILED.
-** DONE org-skill-shell-actuator.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Sovereignty Violation)
-   - ISSUE: No validation or authorization gate for synthesized script execution. Script synthesis bypasses the shell whitelist. No Merkle-Tree integration for recording or rolling back shell-related state changes or command history.
-   - SAFETY: MEDIUM (Whitelisted, but script synthesis is a gap).
-   - MERKLE: FAILED.
-** DONE org-skill-sub-agent-manager.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for recording or rolling back sub-agent-related state changes or concurrent thoughts.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-task-integrity.org [ ]
-   - STATUS: NON-COMPLIANT (Critical Gap)
-   - ISSUE: No implementation code in Phase D. The skill is only a blueprint. No Merkle-Tree integration for recording or rolling back task-related state changes or transition history.
-   - SAFETY: N/A (Missing).
-   - MERKLE: FAILED.
-** DONE org-skill-token-accountant.org [ ]
-   - STATUS: NON-COMPLIANT (Safety/Sovereignty Violation)
-   - ISSUE: Hot-patches the kernel's core variables (`*provider-cascade*`, `*model-selector-fn*`) directly, bypassing the skill registration system's safety. No Merkle-Tree integration for recording or rolling back provider-related state changes or pain history.
-   - SAFETY: LOW (Direct kernel mutation).
-   - MERKLE: FAILED.
-
-* Findings Log
-| Skill | Issue | Priority | Status |
-|-------+-------+----------+--------|
-|       |       |          |        |