feat(psf): transition to Order 2 (Sovereign Architect) with advanced skill graph and philosophical alignment

notes/org-skill-hyper-graph.org

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+#+TITLE: SKILL: Unified Knowledge Hyper-Graph (Universal Literate Note)
+#+ID: skill-hyper-graph
+#+STARTUP: content
+#+FILETAGS: :knowledge:graph:zettelkasten:psf:
+#+DEPENDS_ON: skill-atomic-notes skill-brain-mapper
+
+* Overview
+The **Unified Knowledge Hyper-Graph** extends the agent's memory beyond text. It maps relationships between **Code Blocks, Documents, Media Assets, and Research PDFs**, enabling cross-modal context retrieval.
+
+* Phase A: Demand (PRD)
+:PROPERTIES:
+:STATUS: FROZEN
+:END:
+
+** 1. Purpose
+Unify the system's diverse information silos into a single, navigable graph.
+
+** 2. User Needs
+- **Cross-Modal Linking:** Connect a Lisp function to a research PDF and an Org PRD.
+- **Traceability:** Follow the chain of reasoning from requirement to implementation.
+- **Deep Retrieval:** Pull related media assets during plan synthesis.
+
+* Phase D: Build (Implementation)
+
+** Graph Traversal
+#+begin_src lisp :tangle projects/org-skill-hyper-graph/src/graph-logic.lisp
+(defun hyper-graph-trace-lineage (object-id)
+  "Recursively follows #+ID and [[file:]] links to find related cross-modal nodes."
+  (let* ((obj (org-agent:lookup-object object-id))
+         (links (extract-all-org-links (org-agent:org-object-content obj))))
+    (kernel-log "MEMORY [Hyper-Graph] - Tracing lineage for ~a..." object-id)
+    (loop for link in links collect (resolve-hyper-link link))))
+#+end_src
+
+* Registration
+#+begin_src lisp
+(defskill :skill-hyper-graph
+  :priority 70
+  :trigger (lambda (context) (eq (getf (getf context :payload) :sensor) :deep-trace))
+  :neuro (lambda (context) "Synthesize a lineage report for the target ID.")
+  :symbolic (lambda (action context) action))
+#+end_src