feat: stabilized org-agent two-way communication and UX

- Fixed kernel-to-Emacs communication bridge.
- Resolved boot-time crashes in multiple skeletal skills.
- Refined Chat skill prompt to eliminate conversational filler.
- Updated Emacs UI to automatically clean up status markers.
- Synchronized all fixes via Literate Org-mode documents.
- Verified physical two-way interaction via simulation.

inbox/flight-plan-sovereign-recovery.org

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+#+TITLE: Flight Plan: Sovereign Brain Recovery
+#+AUTHOR: Gemini CLI
+#+DATE: 2026-04-01
+#+FILETAGS: :psf:recovery:build:
+#+STARTUP: content
+
+* Overview
+Rigorous recovery of the =org-agent= kernel after a series of failed build loops.
+
+* Phase A: Purge & Reset (The Scientist)
+** TODO 1. Hard Git Reset
+- Action: =git reset --hard= and =git clean -fd= in =~/memex/projects/org-agent=.
+- Verification: =git status= must be clean.
+
+** TODO 2. Nuke Lisp & Quicklisp Caches
+- Action: Delete =~/.cache/common-lisp/= and =~/.local/share/org-agent/quicklisp/cache/=.
+- Verification: Directories must not exist.
+
+** TODO 3. Verify Secure Environment
+- Action: Check =~/.local/share/org-agent/.env=.
+- Verification: Confirm =MEMEX_DIR= and =OPENROUTER_API_KEY= are correct.
+
+* Phase B: Restoration (The Coder)
+** TODO 4. Restore Literate Source
+- Action: Ensure =docs/README.org= contains the modular kernel logic.
+- Verification: Tangle the file and confirm =src/core.lisp= exists.
+
+* Phase C: Verification (The Tester)
+** TODO 5. Foreground Boot Test
+- Action: Run daemon in foreground.
+- Verification: Confirm "Daemon Listening" and skill jailing.
+
+** TODO 6. Live Handshake
+- Action: =emacs --batch= stimulus test.
+- Verification: Confirm LLM response in log.