Files
memex/system/doom.org~

1102 lines
38 KiB
Org Mode

#+TITLE: Doom Emacs Configuration
#+AUTHOR: Amr Gharbeia
* early-init.el
:PROPERTIES:
:header-args: :tangle ~/.config/emacs/early-init.el
:END:
#+begin_src emacs-lisp
(setq package-enable-at-startup nil)
;;Run Emacs as a server
(require 'server)
(unless (server-running-p) (server-start))
(defvar server-max-buffers 100)
#+end_src
* init.el
:PROPERTIES:
:header-args: :tangle ~/.config/emacs/init.el
:END:
#+begin_src emacs-lisp
(doom!
:input
;; Disable some input methods as I do not use them
-chinese
-cyrillic
-japanese
-korean
-latin
-multilang
-persian
-thai
:completion
company
;;helm
ivy
:ui
doom
;;doom-dashboard
;;doom-quit
;;(emoji +unicode)
hl-todo
hydra
;; indent-guides
;; ligatures
menu
minimap
modeline
nav-flash
neotree
ophints
(popup +defaults)
tabs
treemacs
workspaces
zen
:editor
;; (evil +everywhere)
file-templates
fold
(format +onsave)
;;god
;;lispy
multiple-cursors
;;objed
snippets
;;word-wrap
:emacs
dired
electric
ibuffer
undo
vc
:term
;;eshell
shell
;;term
;;vterm
:checkers
syntax
;;spell
:tools
;;ansi-colors
;;debugger
;;direnv
docker
editorconfig
;;ein
;;eval
lookup
lsp
magit
make
pass
rgb
taskrunner
;;terraform
tmux
;;tree-sitter
:os
(:if IS-MAC macos)
;;tty
;;unicode
:lang
;;agda
;;assembly
;;cc
;;clojure
;;common-lisp
;;coq
;;crystal
;;csharp
;;data
;;dart
;;elixir
;;elm
emacs-lisp
;;erlang
;;ess
;;fsharp
;;fennel
;;fontend
;;gleam
;;go
;;graphql
;;haskell
;;hy
;;idris
;;java
;;javascript
;;julia
;;kotlin
;;latex
;;lean
;;lua
;;markdown
;;nim
;;nix
;;ocaml
;;purescript
;;plantuml
;;powershell
;;prolog
;;python
;;racket
;;raku
;;ruby
;;rust
;;scala
;;scheme
;;sh
;;sql
;;swift
;;terraform
;;web
:email
;;(mu4e +org)
;;notmuch
;;smtp
:app
calendar
;;chat
;;irc
;;rss
:config
;;default
(org +roam2 +capture)
;;pdf
;;email
;;snippets
;; +smartparens
+private/my-config
secrets
)
#+end_src
* packages.el
:PROPERTIES:
:header-args: :tangle ~/.config/emacs/packages.el
:END:
#+begin_src emacs-lisp
(package! flycheck)
(package! org-modern)
(package! org-super-agenda)
(package! org-gtd)
(package! org-roam)
(package! sqlite3)
(package! nov)
(package! pass)
(package! auth-source)
(package! beancount
:recipe (:host github :repo "beancount/beancount-mode"))
(package! calibredb)
(package! docker)
(package! chemtable)
(package! bash-completion)
(package! org-noter)
(package! org-noter-pdftools)
(package! ellama)
#+end_src
* config.el
:PROPERTIES:
:header-args: :tangle ~/.config/emacs/config.el
:END:
#+begin_src emacs-lisp
;;; Package --- Summary
;;; Commentary:
;;; Code:
;; -*- lexical-binding: t; -*-
;; Front Matter
(defvar custom-file (expand-file-name "custom.el" user-emacs-directory))
(when (file-exists-p custom-file) (load custom-file))
(defvar inhibit-startup-message t)
(savehist-mode)
(subword-mode)
(defvar sentence-end-double-space nil)
(add-hook 'server-done-hook (lambda () (delete-frame)))
(desktop-save-mode t)
(use-package! flycheck
:init (global-flycheck-mode)
:diminish (flycheck-mode . "")
:config
(add-hook 'after-init-hook #'global-flycheck-mode)
(setq flycheck-emacs-lisp-load-path 'inherit)
(setq flycheck-emacs-lisp-load-path (concat user-emacs-directory "straight/build")))
(use-package! org
:config
(defvar org-outline-path-complete-in-steps nil)
(defvar org-pretty-entities t) ; Improve org mode looks
(defvar org-hide-emphasis-markers t) ; Hide emphasis markup
(defvar org-num-mode nil)
(defvar org-startup-folded 'shw2levels)
(defvar org-pretty-entities t) ; Improve org mode looks
(defvar org-hide-emphasis-markers t) ; Hide emphasis markup
(defvar org-num-mode nil)
(defvar org-list-demote-modify-bullet t)
(defvar org-src-fontify-natively t)
(defvar org-src-tab-acts-natively t)
(defvar org-startup-with-inline-images t)
(defvar org-image-actual-width '300)
(defvar org-deadline-warning-days 7)
(defvar org-agenda-skip-additional-timestamps-same-entry t)
(defvar org-agenda-span 'fortnight)
(defvar org-todo-keywords '(
(sequence "TODO(t)" "NEXT(n)" "|" "DONE(d!)")
(sequence "WAIT(w@/!)" "|" "CNCL(c@)")
))
(defvar org-todo-keyword-faces '(
("TODO" :foreground "red" :weight bold)
("NEXT" :foreground "red" :weight bold)
("WAIT" :foreground "yellow" :weight bold)
("DONE" :foreground "green" :weight bold)
("CNCL" :foreground "blue" :weight bold)
))
(defvar org-enforce-todo-dependencies t)
(defvar org-tags-exclude-from-inheritance '(
"crypt"
"!private"
))
(defvar org-log-into-drawer "LOGBOOK")
(defvar org-clock-into-drawer t)
(defvar org-habit-graph-column 80)
(defvar org-habit-show-habits-only-for-today nil)
(defvar org-refile-targets '((nil :maxlevel . 9)
(org-agenda-files :maxlevel . 9)))
(defvar org-outline-path-complete-in-steps nil)
(defvar org-refile-allow-creating-parent-nodes 'confirm)
(defvar org-babel-do-load-languages 'org-babel-load-languages '((shell . t)))
:bind (("C-c l" . org-store-link)
("C-c a" . org-agenda)
("C-c c" . org-capture)
:map org-mode-map))
(defun org-summary-todo (n-done n-not-done)
"Switch entry to 'DONE' when all subentries are done, to 'TODO' otherwise.
Uses N-DONE and N-NOT-DONE"
(let (org-log-done org-log-states) ; turn off logging
(org-todo (if (= n-not-done 0) "DONE" "TODO")
)
)
)
(add-hook 'org-after-todo-statistics-hook #'org-summary-todo)
(use-package! org-modern
:config
;; Choose some fonts
(set-face-attribute 'default nil :family "sans-serif")
(set-face-attribute 'variable-pitch nil :family "sans-serif")
(set-face-attribute 'org-modern-symbol nil :family "Iosevka")
;; Edit settings
(defvar org-auto-align-tags nil)
(defvar org-tags-column 0)
(defvar org-catch-invisible-edits 'show-and-error)
(defvar org-special-ctrl-a/e t)
(defvar org-insert-heading-respect-content t)
;; Org styling, hide markup etc.
(defvar org-hide-emphasis-markers t)
(defvar org-pretty-entities t)
;; Agenda styling
(defvar org-agenda-tags-column 0)
(defvar org-agenda-block-separator ?─)
(defvar org-agenda-time-grid
'((daily today require-timed)
(800 1000 1200 1400 1600 1800 2000)
" ┄┄┄┄┄ " "┄┄┄┄┄┄┄┄┄┄┄┄┄┄┄"))
(defvar org-agenda-current-time-string
"◀── now ─────────────────────────────────────────────────")
;; Ellipsis styling
(defvar org-ellipsis "")
(set-face-attribute 'org-ellipsis nil :inherit 'default :box nil)
(global-org-modern-mode))
(use-package! org-super-agenda)
(use-package! org-gtd
:after org
:config
;; Keeping these two settings on instead of enabling (org-gtd-mode) until this issue is resolved https://github.com/Trevoke/org-gtd.el/issues/198
(setq org-edna-use-inheritance t)
(org-edna-mode)
;; (org-gtd-mode)
:bind (
("C-c d c" . org-gtd-capture)
("C-c d e" . org-gtd-engage)
("C-c d p" . org-gtd-process-inbox)
:map org-gtd-clarify-map
("C-c c" . org-gtd-organize)))
(use-package! org-roam
:after org
:config
(org-roam-db-autosync-enable)
(require 'org-roam-dailies)
:bind (
("C-c n f" . org-roam-node-find)
("C-c n g" . org-roam-graph)
("C-c n r" . org-roam-node-random)
("C-c n h" . org-roam-node-convert-headline)
("C-c n i" . org-roam-node-insert)
("C-c n o" . org-id-get-create)
("C-c n t" . org-roam-tag-add)
("C-c n a" . org-roam-alias-add)
("C-c n l" . org-roam-buffer-display-dedicated)
))
(defun my/org-convert-orgzly-to-org-protocol ()
"Reformat Orgzly bookmark at point to org-protocol bookmark."
(interactive)
(when (org-at-heading-p)
(let ((headline (nth 4 (org-heading-components))))
;; Find and store the link. Delete the link line.
(search-forward-regexp "^https?://\\S-*" nil t)
(let ((link (match-string 0)))
(beginning-of-line)
(kill-line)
;; Delete any trailing blank spaces
(org-back-to-heading)
(end-of-line)
(when (not (org-on-heading-p))
(delete-char 1)
)
;; Set new headline
(goto-char (org-entry-beginning-position))
(org-edit-headline (format "[[%s][%s]]" link headline))
;; Set new properties
(org-set-property "TITLE" headline)
(org-set-property "URI" link)
(message "Reformatted Orgzly bookmark at point to org-protocol bookmark")
)
)
)
)
(use-package! calibredb
:config
(setq calibredb-format-all-the-icons t)
(setq calibredb-format-icons-in-terminal t)
;; Forcefully reset the variable after loading calibredb
(defvar calibredb-root-dir (concat (getenv "HOME") "/library/books"))
(defvar calibredb-db-dir (expand-file-name "metadata.db" calibredb-root-dir))
; (defvar calibredb-library-alist (concat (getenv "HOME") "/library/books"))
;; (defvar calibredb-search-page-max-rows 1000)
(defvar calibredb-id-width 6)
(defvar calibredb-title-width 100)
(defvar calibredb-format-width 0)
(defvar calibredb-date-width 0)
(defvar calibredb-author-width 20)
(defvar calibredb-comment-width 0)
(defvar calibredb-tag-width 0)
(defvar calibredb-show-mode-map
(let ((map (make-sparse-keymap)))
(define-key map "?" #'calibredb-entry-dispatch)
(define-key map "o" #'calibredb-find-file)
(define-key map "O" #'calibredb-find-file-other-frame)
(define-key map "V" #'calibredb-open-file-with-default-tool)
(define-key map "s" #'calibredb-set-metadata-dispatch)
(define-key map "e" #'calibredb-export-dispatch)
(define-key map "q" #'calibredb-entry-quit)
(define-key map "y" #'calibredb-yank-dispatch)
(define-key map "," #'calibredb-quick-look)
(define-key map "." #'calibredb-dired-open)
(define-key map "\M-/" #'calibredb-rga)
(define-key map "\M-t" #'calibredb-set-metadata--tags)
(define-key map "\M-a" #'calibredb-set-metadata--author_sort)
(define-key map "\M-A" #'calibredb-set-metadata--authors)
(define-key map "\M-T" #'calibredb-set-metadata--title)
(define-key map "\M-c" #'calibredb-set-metadata--comments)
map)
"Keymap for `calibredb-show-mode'.")
(defvar calibredb-search-mode-map
(let ((map (make-sparse-keymap)))
(define-key map [mouse-3] #'calibredb-search-mouse)
(define-key map (kbd "<RET>") #'calibredb-find-file)
(define-key map "?" #'calibredb-dispatch)
(define-key map "a" #'calibredb-add)
(define-key map "A" #'calibredb-add-dir)
(define-key map "c" #'calibredb-clone)
(define-key map "d" #'calibredb-remove)
(define-key map "D" #'calibredb-remove-marked-items)
(define-key map "j" #'calibredb-next-entry)
(define-key map "k" #'calibredb-previous-entry)
(define-key map "l" #'calibredb-virtual-library-list)
(define-key map "L" #'calibredb-library-list)
(define-key map "n" #'calibredb-virtual-library-next)
(define-key map "N" #'calibredb-library-next)
(define-key map "p" #'calibredb-virtual-library-previous)
(define-key map "P" #'calibredb-library-previous)
(define-key map "s" #'calibredb-set-metadata-dispatch)
(define-key map "S" #'calibredb-switch-library)
(define-key map "o" #'calibredb-find-file)
(define-key map "O" #'calibredb-find-file-other-frame)
(define-key map "v" #'calibredb-view)
(define-key map "V" #'calibredb-open-file-with-default-tool)
(define-key map "," #'calibredb-quick-look)
(define-key map "." #'calibredb-dired-open)
(define-key map "y" #'calibredb-yank-dispatch)
(define-key map "b" #'calibredb-catalog-bib-dispatch)
(define-key map "e" #'calibredb-export-dispatch)
(define-key map "r" #'calibredb-search-refresh-and-clear-filter)
(define-key map "R" #'calibredb-search-clear-filter)
(define-key map "q" #'calibredb-search-quit)
(define-key map "m" #'calibredb-mark-and-forward)
(define-key map "f" #'calibredb-toggle-favorite-at-point)
(define-key map "x" #'calibredb-toggle-archive-at-point)
(define-key map "h" #'calibredb-toggle-highlight-at-point)
(define-key map "u" #'calibredb-unmark-and-forward)
(define-key map "i" #'calibredb-edit-annotation)
(define-key map (kbd "<DEL>") #'calibredb-unmark-and-backward)
(define-key map (kbd "<backtab>") #'calibredb-toggle-view)
(define-key map (kbd "TAB") #'calibredb-toggle-view-at-point)
(define-key map "\M-n" #'calibredb-show-next-entry)
(define-key map "\M-p" #'calibredb-show-previous-entry)
(define-key map "/" #'calibredb-search-live-filter)
(define-key map "\M-t" #'calibredb-set-metadata--tags)
(define-key map "\M-a" #'calibredb-set-metadata--author_sort)
(define-key map "\M-A" #'calibredb-set-metadata--authors)
(define-key map "\M-T" #'calibredb-set-metadata--title)
(define-key map "\M-c" #'calibredb-set-metadata--comments)
map)
"Keymap for `calibredb-search-mode'.")
)
(use-package! org-noter)
(use-package! org-noter-pdftools
:after org-noter
:config
;; Add a function to ensure precise note is inserted
(defun org-noter-pdftools-insert-precise-note (&optional toggle-no-questions)
(interactive "P")
(org-noter--with-valid-session
(let ((org-noter-insert-note-no-questions (if toggle-no-questions
(not org-noter-insert-note-no-questions)
org-noter-insert-note-no-questions))
(org-pdftools-use-isearch-link t)
(org-pdftools-use-freepointer-annot t))
(org-noter-insert-note (org-noter--get-precise-info)))))
;; fix https://github.com/weirdNox/org-noter/pull/93/commits/f8349ae7575e599f375de1be6be2d0d5de4e6cbf
(defun org-noter-set-start-location (&optional arg)
"When opening a session with this document, go to the current location.
With a prefix ARG, remove start location."
(interactive "P")
(org-noter--with-valid-session
(let ((inhibit-read-only t)
(ast (org-noter--parse-root))
(location (org-noter--doc-approx-location (when (called-interactively-p 'any) 'interactive))))
(with-current-buffer (org-noter--session-notes-buffer session)
(org-with-wide-buffer
(goto-char (org-element-property :begin ast))
(if arg
(org-entry-delete nil org-noter-property-note-location)
(org-entry-put nil org-noter-property-note-location
(org-noter--pretty-print-location location))))))))
(with-eval-after-load 'pdf-annot
(add-hook 'pdf-annot-activate-handler-functions #'org-noter-pdftools-jump-to-note)))
(use-package! nov
:config
(add-to-list 'auto-mode-alist '("\\.epub\\'" . nov-mode)))
(use-package! pass)
(use-package! auth-source
:config (auth-source-pass-enable))
(use-package! bash-completion
:config
(require 'bash-completion)
(bash-completion-setup)
(defvar shell-dynamic-complete-functions t)
)
(use-package! docker
:bind ("C-c d" . docker))
(use-package! chemtable)
(use-package! ellama
:ensure t
:bind ("C-c e" . ellama)
;; send last message in chat buffer with C-c C-c
:hook (org-ctrl-c-ctrl-c-final . ellama-chat-send-last-message)
:init (setopt ellama-auto-scroll t)
:config
;; show ellama context in header line in all buffers
(ellama-context-header-line-global-mode +1)
;; show ellama session id in header line in all buffers
(ellama-session-header-line-global-mode +1))
(use-package! eww
:config
(add-hook 'eww-mode-hook 'visual-line-mode))
(use-package! beancount
:config
(add-to-list 'auto-mode-alist '("\\.beancount\\'" . beancount-mode))
(add-hook 'beancount-mode-hook #'outline-minor-mode)
(define-key beancount-mode-map (kbd "C-c C-n") #'outline-next-visible-heading)
(define-key beancount-mode-map (kbd "C-c C-p") #'outline-previous-visible-heading)
(add-hook 'beancount-mode-hook #'flymake-bean-check-enable))
(use-package! flyspell
:config
(setq ispell-program-name "hunspell"
ispell-default-dictionary "en_US"
)
:diminish (flyspell-mode . "φ")
:hook (text-mode . flyspell-mode)
:bind (
("M-<f7>" . flyspell-buffer)
("<f7>" . flyspell-word)
("C-;" . flyspell-auto-correct-previous-word)
)
)
(defun my/fill-or-unfill-paragraph (&optional unfill region)
"Fill paragraph (or REGION). With the prefix argument UNFILL, fill it instead."
(interactive (progn
(barf-if-buffer-read-only)
(list (if current-prefix-arg 'fill) t)))
(let ((fill-column (if unfill fill-column (point-max))))
(fill-paragraph nil region)))
(bind-key "M-q" 'my/fill-or-unfill-paragraph)
(defun my/fill-or-unfill-all-paragraphs (&optional unfill)
"Fill or unfill all paragraphs in the current buffer.
With the prefix argument UNFILL, fill them instead."
(interactive (list (if current-prefix-arg 'fill)))
(let ((fill-column (if unfill fill-column (point-max))))
(save-excursion
(goto-char (point-min))
(while (not (eobp))
(fill-paragraph nil t)
(forward-paragraph)))))
(bind-key "M-Q" 'my/fill-or-unfill-all-paragraphs)
(remove-hook 'text-mode-hook #'turn-on-auto-fill)
(add-hook 'text-mode-hook 'turn-on-visual-line-mode)
;;; Package --- Summary
;;; Commentary:
;;; Code:
;; -*- lexical-binding: t; -*-
;; Front Matter
(defvar custom-file (expand-file-name "custom.el" user-emacs-directory))
(when (file-exists-p custom-file) (load custom-file))
(defvar inhibit-startup-message t)
(savehist-mode)
(subword-mode)
(defvar sentence-end-double-space nil)
(add-hook 'server-done-hook (lambda () (delete-frame)))
(desktop-save-mode t)
(use-package! flycheck
:init (global-flycheck-mode)
:diminish (flycheck-mode . "")
:config
(add-hook 'after-init-hook #'global-flycheck-mode)
(setq flycheck-emacs-lisp-load-path 'inherit)
(setq flycheck-emacs-lisp-load-path (concat user-emacs-directory "straight/build")))
(use-package! org
:config
(defvar org-outline-path-complete-in-steps nil)
(defvar org-pretty-entities t) ; Improve org mode looks
(defvar org-hide-emphasis-markers t) ; Hide emphasis markup
(defvar org-num-mode nil)
(defvar org-startup-folded 'shw2levels)
(defvar org-pretty-entities t) ; Improve org mode looks
(defvar org-hide-emphasis-markers t) ; Hide emphasis markup
(defvar org-num-mode nil)
(defvar org-list-demote-modify-bullet t)
(defvar org-src-fontify-natively t)
(defvar org-src-tab-acts-natively t)
(defvar org-startup-with-inline-images t)
(defvar org-image-actual-width '300)
(defvar org-deadline-warning-days 7)
(defvar org-agenda-skip-additional-timestamps-same-entry t)
(defvar org-agenda-span 'fortnight)
(defvar org-todo-keywords '(
(sequence "TODO(t)" "NEXT(n)" "|" "DONE(d!)")
(sequence "WAIT(w@/!)" "|" "CNCL(c@)")
))
(defvar org-todo-keyword-faces '(
("TODO" :foreground "red" :weight bold)
("NEXT" :foreground "red" :weight bold)
("WAIT" :foreground "yellow" :weight bold)
("DONE" :foreground "green" :weight bold)
("CNCL" :foreground "blue" :weight bold)
))
(defvar org-enforce-todo-dependencies t)
(defvar org-tags-exclude-from-inheritance '(
"crypt"
"!private"
))
(defvar org-log-into-drawer "LOGBOOK")
(defvar org-clock-into-drawer t)
(defvar org-habit-graph-column 80)
(defvar org-habit-show-habits-only-for-today nil)
(defvar org-refile-targets '((nil :maxlevel . 9)
(org-agenda-files :maxlevel . 9)))
(defvar org-outline-path-complete-in-steps nil)
(defvar org-refile-allow-creating-parent-nodes 'confirm)
(defvar org-babel-do-load-languages 'org-babel-load-languages '((shell . t)))
:bind (("C-c l" . org-store-link)
("C-c a" . org-agenda)
("C-c c" . org-capture)
:map org-mode-map))
(defun org-summary-todo (n-done n-not-done)
"Switch entry to 'DONE' when all subentries are done, to 'TODO' otherwise.
Uses N-DONE and N-NOT-DONE"
(let (org-log-done org-log-states) ; turn off logging
(org-todo (if (= n-not-done 0) "DONE" "TODO")
)
)
)
(add-hook 'org-after-todo-statistics-hook #'org-summary-todo)
(use-package! org-modern
:config
;; Choose some fonts
(set-face-attribute 'default nil :family "sans-serif")
(set-face-attribute 'variable-pitch nil :family "sans-serif")
(set-face-attribute 'org-modern-symbol nil :family "Iosevka")
;; Edit settings
(defvar org-auto-align-tags nil)
(defvar org-tags-column 0)
(defvar org-catch-invisible-edits 'show-and-error)
(defvar org-special-ctrl-a/e t)
(defvar org-insert-heading-respect-content t)
;; Org styling, hide markup etc.
(defvar org-hide-emphasis-markers t)
(defvar org-pretty-entities t)
;; Agenda styling
(defvar org-agenda-tags-column 0)
(defvar org-agenda-block-separator ?─)
(defvar org-agenda-time-grid
'((daily today require-timed)
(800 1000 1200 1400 1600 1800 2000)
" ┄┄┄┄┄ " "┄┄┄┄┄┄┄┄┄┄┄┄┄┄┄"))
(defvar org-agenda-current-time-string
"◀── now ─────────────────────────────────────────────────")
;; Ellipsis styling
(defvar org-ellipsis "")
(set-face-attribute 'org-ellipsis nil :inherit 'default :box nil)
(global-org-modern-mode))
(use-package! org-super-agenda)
(use-package! org-gtd
:after org
:config
;; Keeping these two settings on instead of enabling (org-gtd-mode) until this issue is resolved https://github.com/Trevoke/org-gtd.el/issues/198
(setq org-edna-use-inheritance t)
(org-edna-mode)
;; (org-gtd-mode)
:bind (
("C-c d c" . org-gtd-capture)
("C-c d e" . org-gtd-engage)
("C-c d p" . org-gtd-process-inbox)
:map org-gtd-clarify-map
("C-c c" . org-gtd-organize)))
(use-package! org-roam
:after org
:config
(org-roam-db-autosync-enable)
(require 'org-roam-dailies)
:bind (
("C-c n f" . org-roam-node-find)
("C-c n g" . org-roam-graph)
("C-c n r" . org-roam-node-random)
("C-c n h" . org-roam-node-convert-headline)
("C-c n i" . org-roam-node-insert)
("C-c n o" . org-id-get-create)
("C-c n t" . org-roam-tag-add)
("C-c n a" . org-roam-alias-add)
("C-c n l" . org-roam-buffer-display-dedicated)
))
(defun my/org-convert-orgzly-to-org-protocol ()
"Reformat Orgzly bookmark at point to org-protocol bookmark."
(interactive)
(when (org-at-heading-p)
(let ((headline (nth 4 (org-heading-components))))
;; Find and store the link. Delete the link line.
(search-forward-regexp "^https?://\\S-*" nil t)
(let ((link (match-string 0)))
(beginning-of-line)
(kill-line)
;; Delete any trailing blank spaces
(org-back-to-heading)
(end-of-line)
(when (not (org-on-heading-p))
(delete-char 1)
)
;; Set new headline
(goto-char (org-entry-beginning-position))
(org-edit-headline (format "[[%s][%s]]" link headline))
;; Set new properties
(org-set-property "TITLE" headline)
(org-set-property "URI" link)
(message "Reformatted Orgzly bookmark at point to org-protocol bookmark")
)
)
)
)
(use-package! calibredb
:config
(setq calibredb-format-all-the-icons t)
(setq calibredb-format-icons-in-terminal t)
;; Forcefully reset the variable after loading calibredb
(defvar calibredb-root-dir (concat (getenv "HOME") "/library/books"))
(defvar calibredb-db-dir (expand-file-name "metadata.db" calibredb-root-dir))
; (defvar calibredb-library-alist (concat (getenv "HOME") "/library/books"))
;; (defvar calibredb-search-page-max-rows 1000)
(defvar calibredb-id-width 6)
(defvar calibredb-title-width 100)
(defvar calibredb-format-width 0)
(defvar calibredb-date-width 0)
(defvar calibredb-author-width 20)
(defvar calibredb-comment-width 0)
(defvar calibredb-tag-width 0)
(defvar calibredb-show-mode-map
(let ((map (make-sparse-keymap)))
(define-key map "?" #'calibredb-entry-dispatch)
(define-key map "o" #'calibredb-find-file)
(define-key map "O" #'calibredb-find-file-other-frame)
(define-key map "V" #'calibredb-open-file-with-default-tool)
(define-key map "s" #'calibredb-set-metadata-dispatch)
(define-key map "e" #'calibredb-export-dispatch)
(define-key map "q" #'calibredb-entry-quit)
(define-key map "y" #'calibredb-yank-dispatch)
(define-key map "," #'calibredb-quick-look)
(define-key map "." #'calibredb-dired-open)
(define-key map "\M-/" #'calibredb-rga)
(define-key map "\M-t" #'calibredb-set-metadata--tags)
(define-key map "\M-a" #'calibredb-set-metadata--author_sort)
(define-key map "\M-A" #'calibredb-set-metadata--authors)
(define-key map "\M-T" #'calibredb-set-metadata--title)
(define-key map "\M-c" #'calibredb-set-metadata--comments)
map)
"Keymap for `calibredb-show-mode'.")
(defvar calibredb-search-mode-map
(let ((map (make-sparse-keymap)))
(define-key map [mouse-3] #'calibredb-search-mouse)
(define-key map (kbd "<RET>") #'calibredb-find-file)
(define-key map "?" #'calibredb-dispatch)
(define-key map "a" #'calibredb-add)
(define-key map "A" #'calibredb-add-dir)
(define-key map "c" #'calibredb-clone)
(define-key map "d" #'calibredb-remove)
(define-key map "D" #'calibredb-remove-marked-items)
(define-key map "j" #'calibredb-next-entry)
(define-key map "k" #'calibredb-previous-entry)
(define-key map "l" #'calibredb-virtual-library-list)
(define-key map "L" #'calibredb-library-list)
(define-key map "n" #'calibredb-virtual-library-next)
(define-key map "N" #'calibredb-library-next)
(define-key map "p" #'calibredb-virtual-library-previous)
(define-key map "P" #'calibredb-library-previous)
(define-key map "s" #'calibredb-set-metadata-dispatch)
(define-key map "S" #'calibredb-switch-library)
(define-key map "o" #'calibredb-find-file)
(define-key map "O" #'calibredb-find-file-other-frame)
(define-key map "v" #'calibredb-view)
(define-key map "V" #'calibredb-open-file-with-default-tool)
(define-key map "," #'calibredb-quick-look)
(define-key map "." #'calibredb-dired-open)
(define-key map "y" #'calibredb-yank-dispatch)
(define-key map "b" #'calibredb-catalog-bib-dispatch)
(define-key map "e" #'calibredb-export-dispatch)
(define-key map "r" #'calibredb-search-refresh-and-clear-filter)
(define-key map "R" #'calibredb-search-clear-filter)
(define-key map "q" #'calibredb-search-quit)
(define-key map "m" #'calibredb-mark-and-forward)
(define-key map "f" #'calibredb-toggle-favorite-at-point)
(define-key map "x" #'calibredb-toggle-archive-at-point)
(define-key map "h" #'calibredb-toggle-highlight-at-point)
(define-key map "u" #'calibredb-unmark-and-forward)
(define-key map "i" #'calibredb-edit-annotation)
(define-key map (kbd "<DEL>") #'calibredb-unmark-and-backward)
(define-key map (kbd "<backtab>") #'calibredb-toggle-view)
(define-key map (kbd "TAB") #'calibredb-toggle-view-at-point)
(define-key map "\M-n" #'calibredb-show-next-entry)
(define-key map "\M-p" #'calibredb-show-previous-entry)
(define-key map "/" #'calibredb-search-live-filter)
(define-key map "\M-t" #'calibredb-set-metadata--tags)
(define-key map "\M-a" #'calibredb-set-metadata--author_sort)
(define-key map "\M-A" #'calibredb-set-metadata--authors)
(define-key map "\M-T" #'calibredb-set-metadata--title)
(define-key map "\M-c" #'calibredb-set-metadata--comments)
map)
"Keymap for `calibredb-search-mode'.")
)
(use-package! org-noter)
(use-package! org-noter-pdftools
:after org-noter
:config
;; Add a function to ensure precise note is inserted
(defun org-noter-pdftools-insert-precise-note (&optional toggle-no-questions)
(interactive "P")
(org-noter--with-valid-session
(let ((org-noter-insert-note-no-questions (if toggle-no-questions
(not org-noter-insert-note-no-questions)
org-noter-insert-note-no-questions))
(org-pdftools-use-isearch-link t)
(org-pdftools-use-freepointer-annot t))
(org-noter-insert-note (org-noter--get-precise-info)))))
;; fix https://github.com/weirdNox/org-noter/pull/93/commits/f8349ae7575e599f375de1be6be2d0d5de4e6cbf
(defun org-noter-set-start-location (&optional arg)
"When opening a session with this document, go to the current location.
With a prefix ARG, remove start location."
(interactive "P")
(org-noter--with-valid-session
(let ((inhibit-read-only t)
(ast (org-noter--parse-root))
(location (org-noter--doc-approx-location (when (called-interactively-p 'any) 'interactive))))
(with-current-buffer (org-noter--session-notes-buffer session)
(org-with-wide-buffer
(goto-char (org-element-property :begin ast))
(if arg
(org-entry-delete nil org-noter-property-note-location)
(org-entry-put nil org-noter-property-note-location
(org-noter--pretty-print-location location))))))))
(with-eval-after-load 'pdf-annot
(add-hook 'pdf-annot-activate-handler-functions #'org-noter-pdftools-jump-to-note)))
(use-package! nov
:config
(add-to-list 'auto-mode-alist '("\\.epub\\'" . nov-mode)))
(use-package! pass)
(use-package! auth-source
:config (auth-source-pass-enable))
(use-package! bash-completion
:config
(require 'bash-completion)
(bash-completion-setup)
(defvar shell-dynamic-complete-functions t)
)
(use-package! docker
:bind ("C-c d" . docker))
(use-package! chemtable)
(use-package! ellama
:ensure t
:bind ("C-c e" . ellama)
;; send last message in chat buffer with C-c C-c
:hook (org-ctrl-c-ctrl-c-final . ellama-chat-send-last-message)
:init (setopt ellama-auto-scroll t)
:config
;; show ellama context in header line in all buffers
(ellama-context-header-line-global-mode +1)
;; show ellama session id in header line in all buffers
(ellama-session-header-line-global-mode +1))
(use-package! eww
:config
(add-hook 'eww-mode-hook 'visual-line-mode))
(use-package! beancount
:config
(add-to-list 'auto-mode-alist '("\\.beancount\\'" . beancount-mode))
(add-hook 'beancount-mode-hook #'outline-minor-mode)
(define-key beancount-mode-map (kbd "C-c C-n") #'outline-next-visible-heading)
(define-key beancount-mode-map (kbd "C-c C-p") #'outline-previous-visible-heading)
(add-hook 'beancount-mode-hook #'flymake-bean-check-enable))
(use-package! flyspell
:config
(setq ispell-program-name "hunspell"
ispell-default-dictionary "en_US"
)
:diminish (flyspell-mode . "φ")
:hook (text-mode . flyspell-mode)
:bind (
("M-<f7>" . flyspell-buffer)
("<f7>" . flyspell-word)
("C-;" . flyspell-auto-correct-previous-word)
)
)
(defun my/fill-or-unfill-paragraph (&optional unfill region)
"Fill paragraph (or REGION). With the prefix argument UNFILL, fill it instead."
(interactive (progn
(barf-if-buffer-read-only)
(list (if current-prefix-arg 'fill) t)))
(let ((fill-column (if unfill fill-column (point-max))))
(fill-paragraph nil region)))
(bind-key "M-q" 'my/fill-or-unfill-paragraph)
(defun my/fill-or-unfill-all-paragraphs (&optional unfill)
"Fill or unfill all paragraphs in the current buffer.
With the prefix argument UNFILL, fill them instead."
(interactive (list (if current-prefix-arg 'fill)))
(let ((fill-column (if unfill fill-column (point-max))))
(save-excursion
(goto-char (point-min))
(while (not (eobp))
(fill-paragraph nil t)
(forward-paragraph)))))
(bind-key "M-Q" 'my/fill-or-unfill-all-paragraphs)
(remove-hook 'text-mode-hook #'turn-on-auto-fill)
(add-hook 'text-mode-hook 'turn-on-visual-line-mode)
#+end_src
* custom.el
:PROPERTIES:
:header-args: :tangle ~/.config/emacs/custom.el
:END:
#+begin_src emacs-lisp
;; To enable an installed theme, just copy the relevant lines below into your
;; ~/.doom.d/config.el file.
(custom-set-variables
'(user-full-name "Amr Gharbeia")
'(email-address "amr@gharbeia.net")
'(calendar-location-name "Washington, DC")
'(calendar-latitude 39.0)
'(calendar-time-zone -300)
'(calendar-longitude -77.1)
'(calendar-standard-time-zone-name "EST")
'(calendar-daylight-time-zone-name "EDT")
'(my-laptop-p (equal (system-name) "lilitop"))
'(my-server-p (and (equal (system-name) "localhost") (equal user-login-name "root")))
'(my-phone-p (not (null (getenv "ANDROID_ROOT"))) "If non-nil, GNU Emacs is running on Termux.")
'(when my-phone-p (defvar gnutls-algorithm-priority "NORMAL:-VERS-TLS1.3"))
'(global-auto-revert-mode) ; simplifies syncing
'(org-directory (concat (getenv "HOME") "/org/"))
'(org-default-notes-file (concat org-directory "/inbox.org"))
'(org-attach-id-dir (concat org-directory "/library"))
'(org-noter-notes-search-path (list (concat org-directory "/library/books")))
'(org-noter-default-notes-file-names '("books.org"))
'(org-agenda-files (list
(concat org-directory "/inbox.org")
(concat org-directory "/org-gtd-tasks.org")
))
'(org-gtd-directory org-directory)
'(org-gtd-organize-hooks '(org-gtd-set-area-of-focus
org-set-tags-command))
'(org-gtd-areas-of-focus '("Atoms"
"Bits"
"Cells"
"Flags"
"Business"
"Wealth"
"Learning"
"Skills"
"Privacy"
"Archive"
"Library"
"Writing"
"Health"
"Home"
"Family"
"Social"
"Egypt"
))
'(org-gtd-clarify-show-horizons 'right)
)
'(org-capture-templates
'(("p" "Protocol" entry (file "inbox.org") "* %^{Title}\nSource: %u, %c\n #+BEGIN_QUOTE\n%i\n#+END_QUOTE\n\n\n%?")
("L" "Protocol Link" entry (file "inbox.org") "* %? [[%:link][%:description]]\n:PROPERTIES:\n:TITLE: %:description\n:URI: %:link\n:CREATED: %U\n:END:" :prepend nil :empty-lines 1 :created t :kill-buffer t)))
'(org-protocol-default-template-key "L")
'(org-roam-capture-templates
'(("L" "link" plain (function org-roam--capture-get-point) "%?" :file-name "web/%<%Y-%m-%dT%H%M%S>.org" :head "#+TITLE: ${title}\n#+CREATED: %<%Y-%m-%dT%H%M%S>" :immediate-finish t :unnarrowed t)
("h" "hugo post" plain "%?" :target (file+head "posts/${slug}.org" "#+TITLE: ${title}\n#+DATE: %U\n#+HUGO_BASE_DIR: ~/gharbeia.net\n#+HUGO_SECTION: ./posts\n#+HUGO_AUTO_SET_LASTMOD: t\n#+HUGO_TAGS: article\n#+HUGO_DRAFT: true\n") :immediate-finish t :unnarrowed t)
("p" "person" plain "%?" :if-new (file+head "people/${slug}.org" "#+TITLE: ${title}") :immediate-finish t :unnarrowed t)))
'(org-roam-dailies-capture-templates
'(("d" "daily" plain "" :target ("file+heaed %<%Y-%m-%d>.org" "#+title: %<%Y-%m-%d>\n\n") :immediate-finish t)))
(custom-set-faces
'(default ((t (:inherit default :height 120))))
'(org-level-1 ((t (:height 1.5))))
'(org-level-2 ((t (:height 1.3))))
'(org-level-3 ((t (:height 1.2))))
'(org-level-4 ((t (:height 1.1))))
'(org-level-5 ((t (:height 1.05))))
'(org-level-6 ((t (:height 1.0))))
'(org-link ((t (:underline t))))
'(org-todo ((t (:foreground "red" :weight bold)))))
'(ellama-providers
'((("ollama" . (make-llm-ollama :chat-model "gemma3:latest" :embedding-model "gemma3:latest" :default-chat-non-standard-params '(("num_ctx" . 8192))))) . nil)
(nil . nil)
(nil . nil)
(("openai" . (make-llm-openai :key (auth-source-pass-get "api-key" "www/openai.com/amr@gharbeia.net") :chat-model "gpt-4o" :embedding-model "text-embedding-3-large")) . nil)
(nil . nil)
(("google" . (make-llm-google :key (auth-source-pass-get "gemini-api-key" "www/google.com/amr.gharbeia") :chat-model "latest" :embedding-model "text-embedding-004")) . nil)
(("groq" . (make-llm-openai-compatible :url "https://api.groq.com/openai/v1" :key (auth-source-pass-get "api-key" "www/console.groq.com/groq@amr.gharbeia.net") :chat-model "llama3-70b-8192" :embedding-model "llama3-70b-8192")) . nil))
'(ellama-provider "ollama")
#+end_src
* private/config.el
:PROPERTIES:
:header-args: :tangle ~/.config/emacs/private/config.el
:END: