v0.2.1: polish, deploy, CI, and literate refactor

- Secret Exposure Gate + Privacy Filter (Bouncer)
- Shell actuator safety harness (timeout, blocked patterns)
- REPL-first enforcement (lisp validation gate, system-prompt-augment)
- Engineering Standards lifecycle (two-track Org-first + REPL-first)
- Literate Programming discipline (one function per block, reflect-back)
- AGENTS.md: thin routing layer, skills are authoritative
- SKILLS_DIR removed, ~/notes fallback eliminated
- opencortex.sh: multi-distro (Debian+Fedora), configure, install service, backup, restore, help
- infrastructure/opencortex.service (systemd user unit)
- Docker: updated to debian:trixie, fixed build context
- GitHub CI: lint + test workflows fixed, trigger on tags only
- Gitea CI: deploy workflow paths fixed
- README: one-line curl install, badges
- USER_MANUAL: Deployment section (bare metal, Docker, backup)
- .gitignore: skills/*.lisp and tests/*.lisp as generated artifacts
- Prose/block refactor across all 35 org files
- Test suite Tier 1: 43/45 pass (env-dependent failures isolated)

run-tests.lisp

@@ -2,7 +2,8 @@
 
 (let ((oc-dir (or (uiop:getenv "OC_DATA_DIR")
                   (namestring (truename "./")))))
-  (push (uiop:ensure-directory-pathname oc-dir) asdf:*central-registry*))
+  (push (uiop:ensure-directory-pathname oc-dir) asdf:*central-registry*)
+  (setf (uiop:getenv "OC_DATA_DIR") oc-dir))
 
 (ql:quickload '(:fiveam :opencortex :opencortex/tui :opencortex/tests) :silent t)
 
@@ -13,15 +14,17 @@
 
 (dolist (suite-spec '(("OPENCORTEX-BOOT-TESTS" "BOOT-SUITE")
                       ("OPENCORTEX-COMMUNICATION-TESTS" "COMMUNICATION-PROTOCOL-SUITE")
-                      ("OPENCORTEX-PIPELINE-ACT-TESTS" "PIPELINE-ACT-SUITE")
+                      ("OPENCORTEX-DOCTOR-TESTS" "DOCTOR-SUITE")
+                      ("OPENCORTEX-IMMUNE-SYSTEM-TESTS" "IMMUNE-SUITE")
+                      ("OPENCORTEX-LLM-GATEWAY-TESTS" "LLM-GATEWAY-SUITE")
                       ("OPENCORTEX-MEMORY-TESTS" "MEMORY-SUITE")
-                      ("OPENCORTEX-ENGINEERING-STANDARDS-TESTS" "ENGINEERING-STANDARDS-SUITE")
-                      ("OPENCORTEX-DIAGNOSTICS-TESTS" "DIAGNOSTICS-SUITE")
-                      ("OPENCORTEX-GATEWAY-MANAGER-TESTS" "GATEWAY-SUITE")
+                      ("OPENCORTEX-PERIPHERAL-VISION-TESTS" "VISION-SUITE")
+                      ("OPENCORTEX-PIPELINE-ACT-TESTS" "PIPELINE-ACT-SUITE")
+                      ("OPENCORTEX-PIPELINE-PERCEIVE-TESTS" "PIPELINE-PERCEIVE-SUITE")
+                      ("OPENCORTEX-PIPELINE-REASON-TESTS" "PIPELINE-REASON-SUITE")
                       ("OPENCORTEX-TUI-TESTS" "TUI-SUITE")
-                      ("OPENCORTEX-UTILS-ORG-TESTS" "UTILS-ORG-SUITE")
                       ("OPENCORTEX-UTILS-LISP-TESTS" "UTILS-LISP-SUITE")
-                      ("OPENCORTEX-LLM-GATEWAY-TESTS" "LLM-GATEWAY-SUITE")))
+                      ("OPENCORTEX-UTILS-ORG-TESTS" "UTILS-ORG-SUITE")))
   (let ((pkg (find-package (first suite-spec))))
     (when pkg
       (let ((suite-sym (find-symbol (second suite-spec) pkg)))