REORG: Apply semantic directory structure and documentation cleanup

infrastructure/docker/Dockerfile

@@ -0,0 +1,32 @@
+FROM debian:bullseye-slim
+
+ENV DEBIAN_FRONTEND=noninteractive
+
+RUN apt-get update && apt-get install -y \
+    sbcl \
+    emacs-nox \
+    curl \
+    git \
+    socat \
+    netcat-openbsd \
+    libssl-dev \
+    libncurses5-dev \
+    libffi-dev \
+    zlib1g-dev \
+    libsqlite3-dev \
+    && rm -rf /var/lib/apt/lists/*
+
+# Install Quicklisp
+RUN curl -O https://beta.quicklisp.org/quicklisp.lisp \
+    && sbcl --non-interactive --load quicklisp.lisp --eval "(quicklisp-quickstart:install)" --eval "(ql-util:without-prompting (ql:add-to-init-file))" \
+    && rm quicklisp.lisp
+
+WORKDIR /app
+COPY . .
+
+# Initialize system in non-interactive mode
+RUN mkdir -p /root/memex && ./opencortex.sh setup --non-interactive
+
+EXPOSE 9105
+
+CMD ["./opencortex.sh", "boot"]

infrastructure/docker/docker-compose.yml

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+services:
+  opencortex:
+    build:
+      context: .
+      dockerfile: Dockerfile
+    container_name: opencortex
+    env_file: .env
+    volumes:
+      # Mount the entire memex directory (2 levels up from projects/opencortex)
+      - ../..:/memex
+      # Ensure signal-cli state is preserved
+      - signal-state:/root/.local/share/signal-cli
+    ports:
+      - "${ORG_AGENT_DAEMON_PORT:-9105}:9105"
+      - "${ORG_AGENT_WEB_PORT:-8080}:8080"
+    restart: unless-stopped
+
+volumes:
+  signal-state: