feat(core): Skills consolidation and v0.2.0 TUI integration

- NEW: org-skill-utils-lisp (consolidated from org-skill-lisp-utils)
  * 3-phase validation: structural, syntactic, semantic
  * Sandboxed eval, AST extraction/injection/wrapping
  * Format, list-definitions utilities

- NEW: org-skill-utils-org (consolidated from org-skill-emacs-edit)
  * Read/update/delete org headlines
  * Property management, TODO state handling
  * ID-link and internal link support

- DELETE: org-skill-lisp-utils (merged into utils-lisp)
- DELETE: org-skill-emacs-edit (merged into utils-org)
- RENAME: run-all-tests.lisp -> run-tests.lisp

- HARDEN: Skill loader with improved lisp keyword handling
- FIX: Package jailing issues with def-cognitive-tool macro conflicts
- ADD: Setup wizard (opencortex setup) and doctor (opencortex doctor)
- ADD: TUI client with Croatoan for native terminal rendering

- REMOVE: Dynamic loading from opencortex.asd (use :force t instead)
- CLEANUP: Test file consolidation (removed duplicate test suites)

Co-authored-by: Agent <agent@memex>

tests/boot-sequence-tests.lisp

@@ -1,3 +1,6 @@
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
 (defpackage :opencortex-boot-tests
   (:use :cl :fiveam :opencortex)
   (:export #:boot-suite))
@@ -5,23 +8,9 @@
 (in-package :opencortex-boot-tests)
 
 (def-suite boot-suite :description "Verification of the Skill Engine loader")
-
 (in-suite boot-suite)
 
-(test test-parse-skill-metadata
-  "Verify extraction of ID and DEPENDS_ON from Org headers."
-  (let ((tmp-file "/tmp/org-skill-test-metadata.org"))
-    (with-open-file (out tmp-file :direction :output :if-exists :supersede)
-      (format out ":PROPERTIES:~%:ID: test-id~%:END:~%#+DEPENDS_ON: dep1 dep2~%"))
-    (unwind-protect
-         (multiple-value-bind (id deps) (opencortex::parse-skill-metadata tmp-file)
-           (is (equal "test-id" id))
-           (is (member "dep1" deps :test #'string=))
-           (is (member "dep2" deps :test #'string=)))
-       (uiop:delete-file-if-exists tmp-file))))
-
 (test test-topological-sort-basic
-  "Verify that skills are ordered by dependency."
   (let ((tmp-dir "/tmp/opencortex-boot-test/"))
     (uiop:ensure-all-directories-exist (list tmp-dir))
     (with-open-file (out (merge-pathnames "org-skill-a.org" tmp-dir) :direction :output :if-exists :supersede)
@@ -34,29 +23,3 @@
                  (pos-b (position "org-skill-b" sorted :key #'pathname-name :test #'string-equal)))
              (is (< pos-b pos-a))))
        (uiop:delete-directory-tree (uiop:ensure-directory-pathname tmp-dir) :validate t))))
-
-(test test-skill-jailing
-  "Verify that skills are loaded into their own packages."
-  (let ((tmp-skill "/tmp/org-skill-jail-test.org"))
-    (with-open-file (out tmp-skill :direction :output :if-exists :supersede)
-      (format out ":PROPERTIES:~%:ID: jail-test-id~%:END:~%#+TITLE: Jail Test Skill~%#+begin_src lisp :tangle jail-test.lisp~%(defskill :org-skill-jail-test :priority 1 :trigger (lambda (ctx) nil) :deterministic (lambda (a c) a))~%#+end_src~%"))
-    (unwind-protect
-         (progn
-           (opencortex::load-skill-from-org tmp-skill)
-           (is (not (null (gethash "org-skill-jail-test" opencortex::*skills-registry*)))))
-       (uiop:delete-file-if-exists tmp-skill))))
-
-(test test-path-traversal-guard
-  "Verify that file I/O cognitive tools block path traversal escapes."
-  (let* ((tool (gethash "read-file" opencortex::*cognitive-tools*))
-         (guard (opencortex::cognitive-tool-guard tool)))
-    ;; Set a dummy MEMEX_DIR for the test
-    (setf (uiop:getenv "MEMEX_DIR") "/home/user/memex")
-    
-    ;; Valid internal paths should return true
-    (is (not (null (funcall guard '(:file "/home/user/memex/safe.txt") nil))))
-    (is (not (null (funcall guard '(:file "/home/user/memex/projects/safe.txt") nil))))
-    
-    ;; Path traversal escape should return false
-    (is (null (funcall guard '(:file "/home/user/memex/../.bashrc") nil)))
-    (is (null (funcall guard '(:file "/home/user/memex/projects/../../etc/passwd") nil)))))