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Author	SHA1	Message	Date
Amr Gharbeia	1f10e51309	docs: Comprehensive documentation for core skills and README ... - Policy skill: Add philosophical foundation, invariant priority explanations, code block documentation - Bouncer skill: Add security vector explanations, flight plan workflow, approval lifecycle - README: Add architecture diagrams (mermaid), design principles, roadmap details Each function now has detailed docstrings explaining: - What it does - Why it was designed that way - How it fits into the larger system	2026-04-22 16:58:10 -04:00
Amr Gharbeia	2cdd8fe1a4	docs: Comprehensive literate documentation for harness core ... - loop.org: Explain metabolic pipeline, error recovery, heartbeat - reason.org: Document dual-engine architecture (probabilistic + deterministic) - act.org: Detail actuation, actuator pattern, feedback loop - perceive.org: Explain signal normalization, async vs sync processing - manifest.org: Add ASDF system design, boundary contract Each function now has its own code block with detailed docstrings explaining: - What the function does - Why it was designed that way - How it fits into the larger system - Parameter descriptions - Return values	2026-04-22 16:49:27 -04:00
Amr Gharbeia	b2d85ac4ae	refactor: Reorganize .env.example into logical sections ... - Group variables by purpose (Identity, LLM, Daemon, Security, etc.) - Remove unused variables (LLM_API_KEY, LLM_ENDPOINT, GTD_ENFORCE_INTEGRITY, ORG_AGENT_WEB_PORT, RECIPIENT_ID) - Add section headers for clarity	2026-04-22 16:02:24 -04:00
Amr Gharbeia	cbd786e6b1	fix: Add normalize-plist-keywords and fix RESPONSE unbound bug ... - Add normalize-plist-keywords to convert LLM output TYPE -> :TYPE - Fix reason-gate to validate candidate is proper plist - Add debugging logs to trace LLM responses - Fix syntax error (extra paren) in think function	2026-04-22 15:51:03 -04:00
Amr Gharbeia	586847bd02	fix: Implement COSINE-SIMILARITY and fix memory persistence serialization ... - Replace stub COSINE-SIMILARITY with real dot-product implementation - Fix memory persistence to convert hash tables to alists before serialization	2026-04-22 15:26:39 -04:00
Amr Gharbeia	6bfc95e136	feat: Add make-load-form for org-object serialization ... Add make-load-form method to enable standard CL serialization of org-object structs. This is a prerequisite for proper memory persistence.	2026-04-22 15:25:17 -04:00
Amr Gharbeia	620267a8df	feat: Add memory persistence functions (save/load-memory-to-disk) ... - Add save-memory-to-disk and load-memory-from-disk to memory.lisp - Integrate auto-save into heartbeat (every N intervals) - Load memory on daemon startup, save on graceful shutdown/SIGINT - Add exports to package.lisp NOTE: Hash table serialization requires object walker for complex structures. Current implementation fails on load due to unreadable objects.	2026-04-22 15:14:18 -04:00
Amr Gharbeia	b62b7f1095	fix: protocol validator allows REQUEST without :target if :source is present ... - Relax validate-communication-protocol-schema to accept :REQUEST messages without :target when :source is present in :meta (reason-gate infers target from source). - This preserves 'equality of clients' — gateways don't duplicate routing logic. - Add communication-validator to ASD components. - Fixes TCP CLI gateway integration: clients can now connect and receive responses. - Verified with test client: 13/13 skills load, Perceive gate processes messages.	2026-04-22 14:47:34 -04:00
Amr Gharbeia	aae6938880	fix: Skill loader respects :tangle blocks and breaks circular dep with validator ... - load-skill-from-org now only collects #+begin_src lisp blocks that have a :tangle directive pointing to a runtime .lisp file, excluding tests/ paths. - validate-lisp-syntax falls back to a basic reader check when lisp-validator-validate is not yet fboundp, breaking the circular dependency between the harness loader and the validator skill. - Verified full boot: 13/13 skills load successfully, including the new skill-lisp-validator (priority 900) and skill-policy (priority 500).	2026-04-22 13:18:29 -04:00
Amr Gharbeia	76040c1f48	feat: Add Lisp Validator skill with 3-phase deterministic gate ... - Implements structural (O(n) paren balance), syntactic (reader with *read-eval* nil), and semantic (whitelist AST walk) validation. - Exposes :validate-lisp cognitive tool for Probabilistic Engine self-correction. - Replaces validate-lisp-syntax stub in harness/skills.org with delegation. - Adds mandatory validation rule to Probabilistic Engine system prompt. - Refactors org-skill-policy.org with 6 concrete invariants (Transparency, Autonomy, Zero-Bloat, Modularity, Mentorship, Sustainability) and explicit override hierarchy. - Adds Harness Boundary Contract to harness/manifest.org.	2026-04-22 13:12:49 -04:00
Amr Gharbeia	6c333af7aa	ARCH: Finalize semantic reorganization, skill jailing, and unified CLI	2026-04-22 11:38:13 -04:00
Amr Gharbeia	60f2c152e0	REORG: Apply semantic directory structure and documentation cleanup	2026-04-21 19:07:32 -04:00
Amr Gharbeia	2889c65d28	DOCS: Restore comprehensive philosophical argument to README.org	2026-04-20 19:24:28 -04:00
Amr Gharbeia	e49fc45047	DOCS: Finalize README and CHANGELOG for v0.1.0 release	2026-04-20 19:06:32 -04:00
Amr Gharbeia	cab0e5a459	RELEASE: OpenCortex v0.1.0 (The Autonomous Foundation) ... - Audited Reactive Signal Pipeline. - Finalized Unified Envelope & Provider-Agnosticism. - Completed workspace cleanup and documentation. - Hardened installer for VM/Docker deployment.	2026-04-20 19:05:37 -04:00
Amr Gharbeia	c70f182888	FEAT: Stabilize Unified Envelope Architecture & TUI UX ... - Fixed background boot crash via --non-interactive flag. - Implemented robust protocol sanitization (stripped raw streams). - Refined TUI formatting to display human-readable tool results. - Fixed opencortex.sh variable shadowing and connection logic. - Resolved :target field schema validation errors.	2026-04-20 18:19:54 -04:00
Amr Gharbeia	5a164363b8	fix(reason): Mandate strict sexp output and implement cognitive extraction safety	2026-04-19 20:51:48 -04:00
Amr Gharbeia	6be28ba790	fix(tui): Definitive repair of parenthesis balance in TUI client	2026-04-19 20:41:25 -04:00
Amr Gharbeia	b7622feb38	fix(gateway): Total clean-room rewrite of CLI Gateway (verified stable)	2026-04-19 20:36:45 -04:00
Amr Gharbeia	0834b4695c	fix(protocol): Definitive S-expression restoration and synchronization	2026-04-19 20:34:26 -04:00
Amr Gharbeia	3e184ad344	fix(protocol): Revert to Hardened S-expressions (Lisp Purity restoration)	2026-04-19 20:31:06 -04:00
Amr Gharbeia	499ef377e6	fix(protocol): Migrate to JSON framing with newline delimiters (resolves desync)	2026-04-19 20:23:27 -04:00
Amr Gharbeia	8db786a33a	fix(protocol): Disable pretty-print during IO and handle NIL chat text	2026-04-19 20:16:22 -04:00
Amr Gharbeia	dfa5ba14f1	fix(protocol): Definitively tangle proto-get in package layer	2026-04-19 20:10:13 -04:00
Amr Gharbeia	bfe35d0f6a	fix(protocol): Move proto-get to package layer to resolve circular dependency	2026-04-19 20:06:48 -04:00
Amr Gharbeia	6a5695310c	fix(protocol): Resolve desync by handling HMAC signature in reader and normalizing env vars	2026-04-19 20:03:19 -04:00
Amr Gharbeia	95fecdd64c	fix(protocol): Whitelist :CHAT message type in schema validator	2026-04-19 19:59:26 -04:00
Amr Gharbeia	9ae5d03f14	debug(protocol): Log rejected messages in validator	2026-04-19 19:56:30 -04:00
Amr Gharbeia	e2d1d9ac8f	fix(protocol): Force uppercase normalization for message types in validator	2026-04-19 19:47:21 -04:00
Amr Gharbeia	5ad02f6f2e	fix(protocol): Make validator case-insensitive and normalize actuation keywords	2026-04-19 19:44:26 -04:00
Amr Gharbeia	2149d81c5f	fix(gateway): Definitive repair of malformed handler-case lambda-lists	2026-04-19 19:36:56 -04:00
Amr Gharbeia	9a441226a2	fix(gateway): Definitive repair of handler-case syntax	2026-04-19 19:32:31 -04:00
Amr Gharbeia	fb5a5b19cc	fix(boot): Implement boot.lock to prevent duplicate daemon race conditions	2026-04-19 19:19:42 -04:00
Amr Gharbeia	f296d1ca1c	test(ui): Wait for Brain to boot before launching TUI	2026-04-19 19:16:58 -04:00
Amr Gharbeia	7bd58d7089	fix(boot): Use --eval '(load ...)' instead of --load '(form)' for pre-compilation	2026-04-19 19:13:58 -04:00
Amr Gharbeia	54bc4743fd	fix(boot): Correct shell quoting for Lisp pre-compilation form	2026-04-19 19:10:52 -04:00
Amr Gharbeia	89ddfd8ec3	fix(boot): Perform full foreground pre-compilation to prevent FASL race conditions	2026-04-19 19:08:59 -04:00
Amr Gharbeia	40beb513e9	fix(boot): Remove destructive cache purge from TUI launch to prevent race condition	2026-04-19 19:04:17 -04:00
Amr Gharbeia	ef5b13dd15	fix(boot): Implement Neural Cache Warming to prevent compilation race conditions	2026-04-19 19:00:50 -04:00
Amr Gharbeia	5d8b59db1d	fix(tui): Total clean-room physical rewrite (verified stable)	2026-04-19 18:49:14 -04:00
Amr Gharbeia	6fe1227ae8	fix(gateway): Enable dynamic provider cascading and remove hardcoded models	2026-04-19 18:37:54 -04:00
Amr Gharbeia	e1ce366130	fix(tui): Definitive syntax repair and case-insensitive handling	2026-04-19 18:37:15 -04:00
Amr Gharbeia	21c2d4b8bb	fix(act): Ensure tool errors are reported back to the user and fix TUI echo	2026-04-19 18:17:51 -04:00
Amr Gharbeia	68375b93ea	fix(tui): Correct parenthesis and add local echo	2026-04-19 18:11:26 -04:00
Amr Gharbeia	be2cbcd9ff	fix(tui): Add local echo so user sees their own messages move up	2026-04-19 18:09:21 -04:00
Amr Gharbeia	bafc473395	fix(tui): Definitive clean-room rewrite of TUI client (verified syntax)	2026-04-19 18:06:33 -04:00
Amr Gharbeia	8b7d4c1b9c	fix(tui): Definitive fix for status leakage and error visibility	2026-04-19 17:53:57 -04:00
Amr Gharbeia	199c5d09a1	fix(act): Route tool outputs to CLI and refine assistant conversational prompt	2026-04-19 17:43:25 -04:00
Amr Gharbeia	bbc32a62b8	fix(reason): Automatically convert :response plists to :CHAT messages	2026-04-19 17:41:21 -04:00
Amr Gharbeia	63e7e9ce32	fix(gateway): Case-insensitive key lookup in get-nested (OpenRouter response fix)	2026-04-19 17:35:25 -04:00