chore: workspace synchronization (sync inbox.org and staged deletions)

inbox/The Farm at the End of the World.txt

@@ -1,6 +0,0 @@
-The Farm at the End of the World
-
-Reinventing the wheel
-Atoms
-Bits
-Cells

inbox/index.org

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-#+TITLE: Second Brain
-#+AUTHOR: Amr + Sol
-#+DATE: 2026-03-04
-#+OPTIONS: toc:2
-#+STARTUP: overview
-
-* 🧠 Second Brain Setup
-
-This is the central hub for our knowledge management system using:
-- *Org-mode* for structure
-- *org-roam* for Zettelkasten linking
-- *org-gtd* for task management
-- *PARA* for organization (Projects, Areas, Resources, Archive)
-
-*Core Principles:*
-1. *Capture* everything to inbox_mind.org/ → Zero friction entry
-2. *Clarify* daily → Process into system or discard
-3. *Connect* knowledge → Use org-roam linking
-4. *Create* from notes → Publish to 4_published/
-5. *Maintain* → Archive to 5_archive/ when inactive
-
-* Directory Structure
-
-#+BEGIN_SRC
-mind/
-├── inbox_mind.org/              # CAPTURE zone (zero friction)
-│   └── process daily → clarify and file
-├── 1_thinking/           # MY notes and synthesis
-│   ├── dailies/          # org-roam-dailies (journal, logs)
-│   └── notes/            # Permanent notes (Zettelkasten)
-├── 2_reference/          # EXTERNAL knowledge
-│   ├── tools/            # Tool documentation, CLI guides
-│   ├── approaches/       # Methods, patterns, workflows
-│   └── sources/          # Books, articles, papers
-├── 3_creating/           # WORK IN PROGRESS
-│   └── drafts/           # Blog posts, projects, plans
-├── 4_published/          # FINISHED WORK
-│   └── archive/          # Dated publications
-├── 5_archive/            # INACTIVE (not deleted, just archived)
-├── 6_projects/           # ACTIVE PROJECTS
-│   └── [project-name]/   # Each project = subfolder
-├── 7_system/             # Templates and scripts
-│   ├── config/           # Emacs/org config
-│   └── scripts/          # Automation scripts
-└── attachments/          # Images, PDFs, non-text files
-#+END_SRC
-
-* Methods Integration
-
-*Zettelkasten (org-roam)*
-- Notes in 1_thinking/notes/ get an ID
-- Link with [[id:UUID][Description]]
-- Build Maps of Content (MOCs) as indexes
-- Fleeting notes → Literature notes → Permanent notes
-
-*GTD (org-gtd)*
-- @INBOX: 0_inbox/ processes daily
-- @TODAY: What to do NOW (agenda view)
-- @NEXT: Context lists (@home, @office, @call)
-- @WAITING: Delegated items
-- @SOMEDAY: Ideas without active planning
-
-*PARA (Projects, Areas, Resources, Archive)*
-- *Projects*: Goal + deadline → 6_projects/
-- *Areas*: Ongoing responsibility → 1_thinking/areas/
-- *Resources*: Reference material → 2_reference/
-- *Archive*: Inactive items → 5_archive/
-
-*Daily Workflow*
-
-#+BEGIN_SRC
-08:00 | CAPTURE: Empty brain into 0_inbox/
-09:00 | CLARIFY: Process inbox → clarify or delete
-10:00 | ORGANIZE: File clarified items to PARA
-14:00 | CONNECT: Work in 1_thinking/, link notes
-16:00 | REFLECT: Review, archive, plan tomorrow
-#+END_SRC
-
-* PARA Explained
-
-*Projects (6_projects/)*
-- Has a deadline or clear outcome
-- Example: "Build kitchen table", "Launch website v2"
-- When done → archive or convert to area
-
-*Areas (1_thinking/areas/)*
-- Ongoing responsibility without end date
-- Example: "Health", "Finances", "Skills"
-- Maintained continuously
-
-*Resources (2_reference/)*
-- Things I may reference later
-- Example: "Python Regex", "Project Management patterns"
-- Actively curated
-
-*Archive (5_archive/)*
-- Inactive projects, areas, resources
-- NOT deleted—still searchable
-- Re-activate anytime
-
-* Quick Links
-
-- [[file:0_inbox/README.org][Inbox Processing]]
-- [[file:1_thinking/README.org][Thinking Notes]]
-- [[file:2_reference/README.org][Reference Library]]
-- [[file:6_projects/README.org][Active Projects]]
-- [[file:7_system/templates/capture.org][Capture Templates]]
-
-* Statistics
-
-#+BEGIN_SRC emacs-lisp
-(require 'org-collector)
-(org-collector-todo-collector)
-#+END_SRC
-
-#+RESULTS:
-| TODO | NEXT | DOING | WAITING | DONE | CANCELLED | TOTAL |
-
-* Maintenance
-
-*Weekly Review (Every Sunday)*
-1. [ ] Clear 0_inbox/
-2. [ ] Review 6_projects/ - close completed
-3. [ ] Review agenda - update deadlines
-4. [ ] Archive finished items to 5_archive/
-5. [ ] Review waiting items
-6. [ ] Sync notes/devices
-
-*Monthly Review*
-1. [ ] Rebalance Areas and Resources
-2. [ ] Review Archive for reactivation
-3. [ ] Update MOC indexes
-4. [ ] Clean attachments/
-#+END_SRC
-

inbox/night-shift-phase-3.org

@@ -1,43 +0,0 @@
-#+TITLE: Flight Plan: Night Shift Phase 3 - Methodology Batch
-#+ID: flight-plan-night-shift-phase-3
-#+FILETAGS: :plan:psf:lisp:methodology:
-
-* Analyst Phase: Research & Verification
-** TODO Verify `org-agent:kernel-log` existence and signature.
-** TODO Verify `emacs --batch` tangling capability.
-** TODO Verify `sbcl` syntax checking capability.
-** TODO Identify the exact project structure for `../projects/<skill-name>/src/logic.lisp`.
-
-* Coder Phase: Implementation
-** TODO Fix `org-skill-architect.org`
-- [ ] Update tangle paths to `../projects/org-skill-architect/src/architect-logic.lisp`.
-- [ ] Ensure `architect-actuate` accepts `(action context)`.
-- [ ] Use `org-agent:kernel-log`.
-** TODO Implement `org-skill-tech-analyst.org`
-- [ ] Update tangle paths to `../projects/org-skill-tech-analyst/src/analyst-logic.lisp`.
-- [ ] Implement `tech-analyst-actuate` to write TDD test files.
-- [ ] Use `org-agent:kernel-log`.
-** TODO Implement `org-skill-tdd-runner.org`
-- [ ] Update tangle paths to `../projects/org-skill-tdd-runner/src/runner-logic.lisp`.
-- [ ] Implement `run-tests-for-project` using ASDF or external shell.
-- [ ] Use `org-agent:kernel-log`.
-** TODO Implement `org-skill-self-fix.org`
-- [ ] Update tangle paths to `../projects/org-skill-self-fix/src/repair-logic.lisp`.
-- [ ] Implement `self-fix-apply` using the Shell Actuator or direct write.
-- [ ] Use `org-agent:kernel-log`.
-** TODO Implement `org-skill-scientist.org`
-- [ ] Update tangle paths to `../projects/org-skill-scientist/src/scientist-logic.lisp`.
-- [ ] Implement `scientist-hypothesis` neural prompt.
-- [ ] Use `org-agent:kernel-log`.
-** TODO Implement `org-skill-chaos.org`
-- [ ] Update tangle paths to `../projects/org-skill-chaos/src/chaos-logic.lisp`.
-- [ ] Implement `chaos-stress-test` logic.
-- [ ] Use `org-agent:kernel-log`.
-
-* Tester Phase: Validation
-** TODO Tangle all files using `emacs --batch`.
-** TODO Verify syntax of all generated `.lisp` files with `sbcl`.
-** TODO Verify that the agent can progress a skill from FROZEN PRD to a TDD proof (Mock/Simulated run if possible).
-
-* Memory Phase: RCA & Optimization
-** TODO Distill session into institutional memory in `SOUL.org`.