amr/memex
1
0
Fork 0
Code Issues 12 Pull Requests Actions Packages Projects 1 Releases Wiki Activity
Files
dfa13d359c43449b1d99bc7b25822f43aca96285
memex/gtd.org

1588 lines
61 KiB
Org Mode
Raw Blame History

#+TITLE: Amero GTD
#+author: Amero Garcia
#+created: [2026-03-16 Mon 14:28]
#+DATE: 2026-03-11
#+STARTUP: content
#+FILETAGS: :GTD:
* Actions
:PROPERTIES:
:ID: gtd-actions
:END:
** DONE Fix Modular Emacs configuration loading and org-capture templates
- Restored ef-themes configuration in emacs-core.org which was lost during refactoring.
CLOSED: [2026-04-21 Tue 15:00]
- Resolved conflict where multiple modules were overwriting ~/.emacs.d/custom.el.
- Switched from defvar to setq for org-capture-templates to ensure it applies on boot.
** DONE Reorganize Emacs configuration files into the dotemacs project
- Deleted outdated configuration modules in ~/memex/projects/dotemacs/.
- Moved live configuration files from ~/memex/system/ to ~/memex/projects/dotemacs/.
- Organized modules into a /modules subdirectory and snippets into /templates.
- Updated ~/.emacs and internal Org-babel paths to reflect the new location.
CLOSED: [2026-04-21 Tue 16:45]
** DONE Fix emacsclient defaulting to terminal mode
- Identified that 'opencortex' setup.org was hardcoded to install emacs-nox.
- Reinstalled emacs-gtk and restored GUI support.
- Patched projects/opencortex/harness/setup.org to use 'emacs' metapackage.
- Restored missing modules/emacs-ui.org and added it to dotemacs.org.
- Added 'em' alias to ~/.bash_aliases for persistent GUI frame creation.
CLOSED: [2026-04-21 Tue 17:15]
:END:
* Projects
:ID: gtd-projects
:END:
** NEXT OpenCortex v1.0
:PROPERTIES:
:ID: proj-opencortex-v1-0
:Engineering-STATE: D: BUILD
:CREATED: [2026-03-09 Mon 14:23]
:END:
OpenCortex: A Neurosymbolic AI Agent.
*** PHASE: AUTONOMOUS MVP (v0.1.0 Released)
:PROPERTIES:
:ID: proj-mvp-v0-1-0
:END:
The "Zero-to-One" release. The agent must be mathematically secure, CLI-first, and capable of autonomous Memex maintenance.
**** DONE 1. Harness Hardening (The Final Audit)
***** DONE Audit remaining core skills (`org-skill-policy.org`, `org-skill-bouncer.org`) to the new Literate Granularity standard.
***** DONE Implement Verification Lock: Ensure `MANDATORY_SKILLS` pass `validate-lisp-syntax` before boot proceeds.
***** DONE Logging & Transparency: Ensure `context-get-system-logs` is utilized by the Reason engine to explain blocked actions.
**** DONE 2. The Autonomous Scribe & Gardener (The Primary Value Prop)
***** DONE Implement `org-skill-scribe.org`: Background worker that distills daily chronological logs into structured Zettelkasten notes.
***** DONE Implement `org-skill-gardener.org`: Heartbeat-driven skill that autonomously flags orphaned nodes and repairs broken links.
**** DONE 3. The Zero-to-One Experience (setup.org)
***** DONE Consolidate installation instructions, `onboard.sh`, and `Dockerfile` into a single, literate `setup.org` file.
***** DONE Ensure the setup process interactively builds the `.env` and verifies SBCL/Quicklisp dependencies.
**** DONE 4. CLI-First Actuation
CLOSED: [2026-04-14 Tue 09:40]
***** DONE Verified the `cli` actuator and inbound gateway handle standard I/O interaction gracefully via a stateful `socat` connection.
*** PHASE: PUBLICATION & VERIFICATION (v0.1.0 Post-Release)
:PROPERTIES:
:ID: proj-pub-v0-1-0
:END:
Ensuring the system is ready for the world through collaborative testing, documentation, and licensing.
**** DONE 1. Collaborative End-to-End Testing [2026-04-21 Tue]
CLOSED: [2026-04-21 Tue 17:30]
***** DONE Verified stable foundation at commit `cab0e5a`.
***** DONE Verified boot sequence and bidirectional connectivity.
**** DONE 2. Semantic Reorganization & System Stabilization [2026-04-21 Tue]
CLOSED: [2026-04-21 Tue 18:30]
***** DONE Rename directories: harness/, library/, environment/, infrastructure/.
***** DONE Consolidate Probabilistic engine into reason.lisp.
***** DONE Embed bidirectional CLI logic into opencortex.sh.
***** DONE Stabilize skill engine: 12/12 skills loaded with package jailing.
***** DONE Cleanup legacy documentation and deployment artifacts.
**** DONE 2. Comprehensive Documentation <2026-04-14 Tue>
CLOSED: [2026-04-20 Mon 18:00]
***** DONE Draft `USER_MANUAL.org`: Focus on CLI interaction, installation, and Memex structure.
***** DONE Draft `CONTRIBUTING.org`: Explain Literate Granularity and Skill creation standards.
**** DONE 3. License & Legal Finalization <2026-04-14 Tue>
CLOSED: [2026-04-17 Fri 11:25]
***** DONE Assign the AGPLv3 open-source license.
***** DONE Implement a broad Contributor License Agreement (CLA) process.
***** DONE Update `LICENSE` and `CHANGELOG` accordingly.
**** TODO 4. GitHub Migration & Repository Setup <2026-04-14 Tue>
***** TODO Migrate primary remote to GitHub and configure canonical repository.
***** TODO Set repository topics, badges, issue templates, and CI/CD foundations.
**** TODO 5. Marketing & Social Media Launch <2026-04-14 Tue>
***** TODO Execute PR plan (Reddit, Hacker News, X/Twitter).
***** TODO Create a short, high-quality terminal demo GIF/video of the TUI interaction.
*** PHASE: INTERACTIVE REFINEMENT (v0.2.0 Target)
:PROPERTIES:
:ID: proj-refinement-v0-2-0
:END:
Elevating the user interface from raw shell piping to a high-fidelity, native Lisp experience. Priority: Self-editing is the foundation of all future growth. Full org-mode manipulation makes the agent a true Emacs citizen.
Roadmap basis: Evolutionary roadmap from README.org. Working backwards from SOTA parity.
**** DONE 0. Autonomous Self-Editing Foundation
***** DONE org-skill-lisp-repair (Lisp syntax repair)
- Deterministic: auto-balance parens via paren-counting
- Probabilistic: LLM generates surgical fix on =:syntax-error= events
- Memory rollback on failure
DONE: Now in org-skill-lisp-utils (merged from contrib)
***** DONE org-skill-emacs-edit (full org-mode manipulation)
- Read org buffers, parse AST via org-element
- Create/update/delete headlines, set properties, manage TODO states
- Handle =id:= links and internal links
- Pure Lisp implementation (no Emacs subprocess)
***** DONE Expose Structural AST Editing Tools
- Wrap org-skill-emacs-edit into def-cognitive-tool definitions
- Force LLM to use semantic node updates instead of regex file I/O
***** DONE Implement Reflection Loops
- Feed rejection traces (syntax errors, policy blocks) back to LLM to trigger self-correction
***** DONE Harden Actuators
- Fix path-traversal vulnerabilities in file I/O tools (e.g. :write-file)
- Enforce Merkle-snapshots on all state-modifying actions
***** DONE Implement tool permission tiers (ask/allow/deny)
- Per-tool permission plist stored in org-object
- =generate-tool-belt-prompt= filters denied tools before LLM sees them
- Ask-tier prompts user before execution
***** DONE Implement skill hot-reload (=:reload-skill= tool)
- Swap compiled skill files without breaking active sockets
- Reload skill into jailed package namespace
- DONE: Added :reload-skill, :read-file, :write-file, :replace-string tools
- DONE: Fixed ASDF compilation bug (position tracking issue with :serial t)
- DONE: Added explicit :depends-on declarations to opencortex.asd
**** DONE Engineering Process Improvements [2026-04-23 Wed]
***** DONE Fix ASDF compilation bug (position tracking at byte 16834)
- Root cause: Duplicate proto-get, bt: prefix issues, :serial t position cache
- Fix: Removed duplicate, fixed bt:->bordeaux-threads, explicit dependencies
- Added eval-when wrapper for new tools (good Lisp practice)
***** DONE Add test-first methodology to engineering standards
- Rule 10: Test-first - design tests before coding, run chaos testing
- Rule 11: Org as thinking medium - document investigations in prose
- Rule 12: Engineering decision audit trail - document root cause, tradeoffs
- Added to opencortex-contrib/skills/org-skill-engineering-standards.org
***** DONE Perform comprehensive architectural review and evolution strategy [2026-04-27 Mon]
- Identified hidden gaps: Org-mode round-trip, sandboxing vulnerabilities, and GC scaling.
- Defined "Structural AST Editing" and "Reflection Loops" as core strategic requirements.
- Captured findings in [[file:notes/opencortex-architectural-evolution.org][opencortex-architectural-evolution.org]].
***** DONE Fix API drift in opencortex-contrib [2026-04-27 Mon]
- Standardized legacy keywords (:neuro/:symbolic) to new harness standard (:probabilistic/:deterministic).
- Updated 16 skills in opencortex-contrib for kernel compatibility.
**** DONE 4. Core Skills Consolidation [2026-04-23 Thu]
- Merged lisp-validator + lisp-repair → org-skill-lisp-utils.org
- Added lisp utilities: count-char, deterministic-repair, neural-repair
- Added validation: structural, syntactic, semantic checks
- Moved org-skill-self-fix from contrib → core
- Moved org-skill-engineering-standards from contrib → core
- Deleted old org-skill-lisp-validator.org
**** DONE 5. Advanced CLI Onboarding Experience
***** DONE Implement interactive Lisp CLI wizard (=opencortex setup=)
***** TODO Implement =opencortex link <gateway>= for Telegram/Signal bot connection
***** DONE Implement =opencortex doctor= for environment health and API key validation [2026-04-28 Tue]
- Verified 22/22 skills loading with clean boot.
- Fixed macro conflicts and package jailing bugs.
***** TODO Implement =opencortex install <skill>= for dynamic skill downloading
**** DONE Chaos-Driven Bug Fixes (v0.2.0 Pre-Release) [2026-04-28 Tue]
- Fixed major conflict between Type A and Type B def-cognitive-tool macros.
- Enforced dynamic-only loading by removing skills from opencortex.asd.
- Fixed let/let* sequential binding bugs in emacs-edit and self-edit.
- Standardized *cognitive-tools* as a centralized hash table.
- Resolved missing in-package declarations in core skills.
**** DONE 1. Common Lisp TUI Implementation [2026-04-28 Tue]
***** DONE Integrate =croatoan= for native terminal rendering
***** DONE Implement scrollable history viewport for chat and thought streams
***** DONE Implement fixed bottom input box with multi-line support and command history
***** DONE Implement persistent status bar for background workers (Scribe/Gardener)
***** DONE Support syntax highlighting for Lisp code blocks and Org-mode syntax
**** DONE 2. Slash Commands & Interactive Control [2026-04-28 Tue]
***** DONE Implement =/help= command for system overview
***** DONE Implement =/exit= and =/clear= commands
***** DONE Implement =/skill-load <name>= for dynamic hot-reloading
***** DONE Implement =/status=, =/config=, =/search=, =/commit= slash commands
**** DONE 3. Direct Lisp-to-Terminal Actuation [2026-04-28 Tue]
***** DONE Refactor the =:cli= actuator to use native TUI rendering
*** PHASE: EVENT ORCHESTRATION + HITL (v0.3.0)
:PROPERTIES:
:ID: proj-orchestration-v0-3-0
:END:
Unified control plane: hooks + cron + routing in one skill. Deep project understanding.
**** TODO 0. Event Orchestrator (unified hooks+cron+routing)
***** TODO Integrate contrib org-skill-event-orchestrator
- Merge *hook-registry* + *cron-registry* + complexity classifier
- Hooks via =#+HOOK:= Org-mode properties
- Three complexity tiers: =:REFLEX= (no LLM), =:COGNITION= (light LLM), =:REASONING= (full LLM)
- Hook into heartbeat for cron processing
**** TODO 1. Context Manager (project scoping)
***** TODO Integrate contrib org-skill-context-manager
- Stack-based context with =push-context= / =pop-context=
- Path resolution relative to current context
- Memory scope: =:scope= property on org-objects (memex/session/project)
- Implement lazy-loading proxies for large-scale memory traversal (offload cold nodes to disk)
**** TODO 2. Model-Tier Routing (cost optimization)
***** TODO Extend =*model-selector-fn= for complexity-based routing
- Heartbeats → smallest model
- User input → medium model
- Complex reasoning → large model
- Source: GBrain sub-agent model routing
**** TODO 3. Memory Scope Segmentation
***** TODO Extend org-object with =:scope= property
- =:memex= (permanent knowledge)
- =:session= (ephemeral context)
- =:project= (scoped to current work)
- Scope-aware retrieval in memory.lisp
**** TODO 4. Asynchronous Embedding Gateway
***** TODO Implement provider-agnostic org-skill-embedding-gateway
- Support Ollama, llama.cpp, and OpenAI based on .env config
- Implement lazy-loading: edits mark nodes as =:vector :pending=
- Background worker thread batches pending nodes and updates Merkle tree silently
**** TODO 4. Slash Commands (TUI ergonomics)
***** TODO M-x style command palette
***** TODO /- prefix for command mode
***** TODO Commands defined in Org-mode
*** PHASE: LONG-HORIZON PLANNING + GIT WORKFLOWS (v0.4.0)
:PROPERTIES:
:ID: proj-planning-v0-4-0
:END:
Multi-step task mastery, structured tracking with failure handling and course correction.
**** TODO 0. Long-Horizon Planning (task tree DAG)
***** TODO Implement org-skill-long-horizon
- Decompose complex tasks into Org-mode headline trees
- Terminal states: =:todo= → =:next-action= → =:in-progress= → =:done= / =:blocked= / =:stuck=
- Parent summarises child results
- Branch pruning when paths fail
- Source: Claude Code ULTRAPLAN (reimplemented in Lisp)
**** TODO 1. Git Steward (version control integration)
***** TODO Integrate contrib org-skill-git-steward
- Status, diff, commit, push, branch operations
- Policy: commit-before-modify gate (from contrib engineering-standards)
- Log commits to memory
**** TODO 2. TDD Runner Integration
***** TODO Integrate contrib org-skill-tdd-runner
- Run FiveAM tests on file save
- Inject =:test-failure= event on red
- Hook into self-fix for auto-repair proposals
**** TODO 3. Deep Emacs Integration
***** TODO Full org-agenda awareness
- Navigate, clock time, refile, archive
- Uses org-element + org-id
*** PHASE: INTERACTIVE ACTUATION & ENVIRONMENT STEWARDSHIP (v0.5.0)
:PROPERTIES:
:ID: proj-actuation-v0-5-0
:END:
Interactive terminal sessions and autonomous dependency management.
**** TODO 0. Interactive PTY Actuator
***** TODO Stream long-running process output to the context window (e.g., `npm run dev`, REPLs)
***** TODO Implement async interrupt control (Ctrl+C emulation)
**** TODO 1. The Environment Steward
***** TODO Autonomously detect missing dependencies (e.g., "Command not found")
***** TODO Propose an installation command and retry the failed action
*** PHASE: CREATOR + ARCHITECT + GTD (v0.6.0)
:PROPERTIES:
:ID: proj-creator-v0-5-0
:END:
Agent bootstraps itself: creates skills autonomously, designs projects from PRDs, tracks work.
**** TODO 0. Skill Creator (autonomous skill generation)
***** TODO Integrate contrib org-skill-creator
- LLM drafts complete skill org-file from natural language
- Mandatory: syntax validation → jail-load → test → register
**** TODO 1. Architect Agent (PRD → PROTOCOL)
***** TODO Integrate contrib org-skill-architect
- Scan =:STATUS: FROZEN= PRDs
- Generate Phase B PROTOCOL from Phase A
- Write to same file
**** TODO 2. GTD Integration (project tracking)
***** TODO Integrate contrib org-skill-gtd
- Full GTD cycle: capture, clarify, organize, reflect, engage
- org-gtd v4.0 DAG (=:TRIGGER:=, =:BLOCKER:=)
**** TODO 3. Consensus Loop (multi-model agreement)
***** TODO Integrate contrib org-skill-consensus
- Run multiple providers for critical decisions
- Compare results, detect disagreements
- Confidence scoring
**** TODO 4. Web Research (Playwright browsing)
***** TODO Integrate contrib org-skill-playwright + org-skill-web-research
- Headless Chromium via Python bridge
- Text extraction and screenshots
- Gemini Web UI automation
**** TODO 5. Memex Management (PARA lifecycle)
***** TODO Integrate contrib org-skill-memex + org-skill-workspace-manager
- Archive DONE tasks, suggest refiling
- Detect orphaned nodes
- PARA/Zettelkasten maintenance
*** PHASE: VISUAL GROUNDING & MCP BRIDGE (v0.7.0)
:PROPERTIES:
:ID: proj-vision-v0-7-0
:END:
Multimodal visual interaction and ecosystem-wide tool compatibility.
**** TODO 0. Computer Use / Vision
***** TODO Allow the agent to request host OS or browser screenshots
***** TODO Analyze UI and issue precise X/Y coordinate click/type commands via an X11/Wayland bridge
**** TODO 1. MCP Gateway Bridge
***** TODO Build a Lisp-native client for the Model Context Protocol
***** TODO Connect OpenCortex to external tools and data sources
*** PHASE: THE EVALUATION HARNESS (v0.8.0)
:PROPERTIES:
:ID: proj-eval-v0-8-0
:END:
Automated benchmarking to mathematically prove the agent's reasoning capabilities.
**** TODO 0. SWE-Bench Harness
***** TODO Automated pipeline that clones repositories and feeds GitHub issues
***** TODO Track multi-step resolution trajectory, run tests, and score success
*** PHASE: SOTA PARITY (v1.0.0)
:PROPERTIES:
:ID: proj-sota-v1-0-0
:END:
Feature-complete agent competitive with commercial agents. All borrowed concepts reimplemented in pure Lisp.
All features from v0.2.0 through v0.8.0 combined, verified, and tested end-to-end.
| Area | Parity Target |
|------|--------------|
| Self-improvement | Claude Code self-debug |
| Planning | ULTRAPLAN equivalent |
| Tool ecosystem | 10+ cognitive tools |
| Context window | Semantic search + scope segmentation |
| Safety | 6 Policy invariants + formal verification |
| Multi-step tasks | Task trees with terminal states |
| Code editing | Full file read/write via org manipulation |
| Memory | Vector recall in org-object |
| Emacs integration | Full org-mode control (exceeds Claude Code) |
| Autonomy | 100% local capable (exceeds Claude Code) |
*** PHASE: LISP MACHINE EMERGENCE (v2.0.0)
:PROPERTIES:
:ID: proj-lisp-v2-0-0
:END:
From Lisp-using agent to true Lisp machine. Agent IS the Emacs process.
**** TODO Lish: Lisp editor as Org-mode IDE
- Org-babel for interactive Lisp evaluation
- Full REPL in TUI
- No bridge needed — direct memory access
**** TODO Lish: Shell replacement
- Lisp-based shell that speaks plists
- Org-mode buffers as file system
- No bash dependency
*** PHASE: NEUROSYMBOLIC MATURITY (v3.0.0)
:PROPERTIES:
:ID: proj-neuro-v3-0-0
:END:
Deterministic planner takes the wheel. LLM relegated to semantic translation.
**** TODO Deterministic planner
- Planner as pure Lisp function
- No LLM needed for scheduling
- Generates task graphs without probabilistic inference
**** TODO Self-correcting gates
- Gates learn from false positives (user override patterns)
- Adaptive threshold adjustment
*** PHASE: AI STACK INTERNALIZED (v4.0.0)
:PROPERTIES:
:ID: proj-ai-v4-0-0
:END:
The agent understands its own weights. No external inference.
**** TODO Llama.cpp in Lisp
- FFI binding to llama.cpp
- No Python subprocess
- Pure Common Lisp inference
**** TODO Weights as sexps
- Neural weights represented as Lisp data structures
- Homoiconic model introspection
*** PHASE: TRUE AGENCY (v5.0.0)
:PROPERTIES:
:ID: proj-agency-v5-0-0
:END:
World models, temporal reasoning, goal persistence across restarts.
**** TODO World models
- Agent builds predictive models of user behavior
- Project dynamics awareness
- System state forecasting
**** TODO Temporal reasoning
- Scheduling and deadline awareness
- Elapsed duration tracking
- Calendar integration
**** TODO Goal persistence
- Goals survive restarts
- Long-term projects tracked in org-objects
- Cross-session continuity
*** PHASE: EVOLUTIONARY ROADMAP (Previous — Superseded by Critical Analysis)
:PROPERTIES:
:ID: proj-old-roadmap
:END:
Superseded by the critical analysis-informed roadmap above (v0.2.0 through v5.0.0). This section kept for historical reference.
**** TODO v0.1.0: The Autonomous Foundation (Current Release) — Now COMPLETE
**** TODO v1.0.0 (Phase 2.5): The Verified Wrapper (SOTA Parity) — Now v1.0.0
**** TODO v2.0.0 (Phase 3): Cannibalizing the Toolchain — Now v2.0.0
**** TODO v3.0.0 (Phase 4): True Symbolic Determinism — Now v3.0.0
*** PHASE: FOUNDATION (Complete)
**** DONE Draft Swank/Socket communication protocol between CL and Emacs
:PROPERTIES:
:CREATED: [2026-03-22 Sun 14:00]
:ASSIGNED: Agent
:END:
**** DONE Implement core Perceive-Think-Act loop in Common Lisp
:PROPERTIES:
:CREATED: [2026-03-22 Sun 14:00]
:ASSIGNED: Agent
:END:
**** DONE Implement Persistent Object-Store for Org entities in CL
:PROPERTIES:
:CREATED: [2026-03-22 Sun 16:30]
:ASSIGNED: Agent
:END:
**** DONE Implement LLM Connector (Probabilistic Engine) in CL Daemon
:PROPERTIES:
:CREATED: [2026-03-22 Sun 17:30]
:ASSIGNED: Agent
:END:
**** DONE Design Deterministic Engine Heuristics (Lisp logic over Memory)
:PROPERTIES:
:CREATED: [2026-03-22 Sun 17:30]
:END:
**** DONE Achieve Phase 3: The Self-Editing Kernel
:PROPERTIES:
:CREATED: [2026-03-23 Mon 16:30]
:END:
- Jailing & Sandboxing implemented
- Org-Native Skill Standard established
- Telemetry & Introspection API active
*** PHASE: THE SOVEREIGN BOUNDARY (Core vs Skills Refactor)
:PROPERTIES:
:ID: proj-autonomous-boundary
:END:
Slim down the opencortex microharness by moving non-essential cognitive functions to hot-reloadable user-space skills.
**** DONE Extract LLM Provider Routing to a Skill (neuro.lisp)
**** DONE Extract Vector Embedding Algorithms to a Skill (embedding.lisp)
CLOSED: [2026-04-12 Sun 14:10]
:PROPERTIES:
:ID: extract-embedding-skill
:END:
- Created `org-skill-embedding.org`.
- Moved logic to `src/embedding-logic.lisp` via tangling.
- Updated `system-definition.org`.
**** DONE Extract Sparse Tree Context Pruning Strategies to a Skill (context.lisp)
CLOSED: [2026-04-12 Sun 14:25]
:PROPERTIES:
:ID: extract-context-skill
:END:
- Created `org-skill-peripheral-vision.org`.
- Moved logic to `src/context-logic.lisp` via tangling.
- Updated `system-definition.org`.
**** DONE Implement `org-skill-peripheral-vision` (Moving embedding logic out of core)
CLOSED: [2026-04-12 Sun 14:25]
:PROPERTIES:
:ID: impl-peripheral-vision
:END:
**** DONE Implement communication protocol Schema Validation (Prevent reader macro injection in communication.lisp)
CLOSED: [2026-04-12 Sun 14:45]
:PROPERTIES:
:ID: communication-protocol-schema-validation
:END:
- Created `org-skill-protocol-validator.org`.
- Integrated `validate-communication-protocol-schema` into `communication.org`.
- Added `protocol-validator.lisp` to system definition.
**** DONE Implement Pluggable communication protocol Integrity Hashing (Core interface, Skill-based algorithms)
CLOSED: [2026-04-12 Sun 15:15]
:PROPERTIES:
:ID: communication-protocol-integrity-hashing
:END:
- Integrated HMAC-SHA256 (`ironclad:make-mac`) in `literate/communication.org`.
**** DONE Implement Native Lisp Merkle-Tree Versioning (Short-term undo buffer in memory.lisp)
CLOSED: [2026-04-12 Sun 19:15]
**** DONE Performance: Implement Copy-on-Write (CoW) or Persistent Data Structures for Memory
CLOSED: [2026-04-12 Sun 19:15]
**** DONE Feature: Implement Latent Reflection (Proactive Gardening) using heartbeat idle cycles
CLOSED: [2026-04-12 Sun 19:15]
**** DONE Simplification: Refactor Cognitive Cycle into a Unified Reactive Signal Pipeline
CLOSED: [2026-04-12 Sun 19:15]
**** DONE Resilience: Implement Micro-Rollbacks for the Immune System
CLOSED: [2026-04-12 Sun 19:15]
**** DONE Implement `org-skill-memory-archivist` (Long-term IPFS checkpointing and P2P sync)
CLOSED: [2026-04-12 Sun 19:15]
**** DONE Implement True Lisp Sandboxing (eval-safe mechanism in core and policy in skills)
CLOSED: [2026-04-12 Sun 19:15]
**** DONE Decouple Vendor Logic from Probabilistic Engine (Move Google/Anthropic/OpenAI to Skills)
CLOSED: [2026-04-12 Sun 19:15]
**** DONE Component IV: Comprehensive Core Skill Audit (Review all 39 skills)
CLOSED: [2026-04-12 Sun 19:45]
:PROPERTIES:
:ID: core-skill-audit-task
:END:
**** DONE Consolidation I: Unified LLM Gateway (Anthropic, Gemini, Groq, OpenAI, etc.)
**** DONE Consolidation II: Credentials Vault (Secure Enclave & Masked Logging)
**** DONE Consolidation III: Homoiconic Memory (Unified Grammar, Bridge, & ID Generation)
**** DONE Consolidation IV: State Persistence Layer (Unified Local & IPFS Checkpointing)
**** DONE Consolidation V: Event Orchestrator (Unified Cron, Hooks, & Cognitive Routing)
**** DONE Consolidation VI: Task Orchestrator (Task Integrity, Delegation, & Consensus)
CLOSED: [2026-04-11 Sat 13:45]
:PROPERTIES:
:ID: task-orchestrator-consolidation
:END:
- Implemented Parallel Multi-Backend Consensus in neuro.lisp.
- Implemented Task Integrity (GTD semantics) in symbolic.lisp.
- Integrated Consensus Gate and Delegation hooks in core.lisp.
- Verified with new task-orchestrator-tests.lisp.
**** DONE Implement Unified Envelope Architecture & Channel-Awareness
CLOSED: [2026-04-20 Mon 13:20]
- Removed specialized :CHAT type; reverted to semantic :REQUEST/:EVENT protocol.
- Decoupled routing metadata into a :META envelope (SOURCE, SESSION-ID).
- Updated TUI, Emacs, and CLI gateways to use the unified protocol.
- Verified end-to-end loop with TUI; kernel correctly routes responses back to origin interface.
- Achieved "Equality of Clients" mandate.
**** IN-PROGRESS Full review of opencortex's harness
:PROPERTIES:
:CREATED: [2026-04-13 Mon 13:30]
:ASSIGNED: Agent
:END:
- [X] Audit terminology: Replaced OACP with "communication protocol" workspace-wide.
- [X] Audit boot sequence: Synchronized loader with `org-skill-policy.org`.
- [X] Implement Unified Envelope (Channel-Aware Routing).
- [-] Audit core Perceive-Think-Act loop.
- [X] Verified protocol framing and reader jailing (`*read-eval* nil`).
- [X] Refactored `loop.org` for literate granularity and configuration externalization.
- [X] Improved error handling (restricted rollback) and added graceful shutdown.
- [X] **FIXED:** Implemented symbolic guard check in `act-gate` via Bouncer skill refactoring.
- [X] **FIXED:** Harness `deterministic-verify` now correctly respects skill triggers.
- [X] Ensure alignment with System Policy and Engineering Standards.
- [X] Restored structural integrity by fixing `manifest.org` loading sequence.
**** TODO Wake up the Scribe (Implement autonomous weekly Journal-to-Ledger distillation in org-skill-scribe.org)
**** TODO Implement `org-skill-lisp-repair` (Self-correcting syntax gate for Deterministic Engine)
CLOSED: [2026-04-11 Sat 15:10]
:PROPERTIES:
:ID: lisp-repair-gate
:END:
- Implemented asynchronous, event-driven repair logic.
- Decoupled core from repair logic (emits `:syntax-error` event).
- Proven via lisp-repair-tests.lisp (Asynchronous flow verified).
**** DONE Implement `org-skill-formal-verification` (Prove safety of high-impact actions)
CLOSED: [2026-04-11 Sat 18:15]
:PROPERTIES:
:ID: formal-verification-task
:END:
- Implemented `org-skill-formal-verification.org`.
- Created Lisp-Native Symbolic Prover for security invariants.
- Implemented `path-confinement` invariant (restricted to memex root).
- Implemented `no-network-exfil` invariant (blocking nc, ssh, etc).
- Verified with `formal-verification-tests.lisp`.
*** PHASE: DETERMINISTIC ENGINE REFINEMENT
**** DONE Verify Autonomous Self-Fix Loop
CLOSED: [2026-04-11 Sat 14:20]
:PROPERTIES:
:CREATED: [2026-03-23 Mon 16:30]
:END:
- Proven repair capability via self-fix-tests.lisp.
- Verified surgical code patching and hot-reloading.
- Documentation and RCA complete.
**** DONE Implement "Planning Mode" (Deterministic Engine Bouncer) for Complex Actions
CLOSED: [2026-04-11 Sat 15:30]
:PROPERTIES:
:CREATED: [2026-04-01 Wed 17:00]
:END:
- Implemented `bouncer-check` interceptor in `symbolic.lisp`.
- Created `org-skill-bouncer.org` for flight plan serialization.
- Verified asynchronous Org-native approval loop via `bouncer-tests.lisp`.
**** DONE Implement Authorization Gate (communication protocol) for "Planning Mode"
CLOSED: [2026-04-11 Sat 15:30]
:PROPERTIES:
:CREATED: [2026-04-01 Wed 17:00]
:END:
- Integrated with Org-mode state transitions (`PLAN` -> `APPROVED`).
- Leveraged Memory event bus for asynchronous re-injection.
**** DONE Refactor Architecture Terminology (Associative -> Probabilistic, Deliberate -> Deterministic)
CLOSED: [2026-04-12 Sun 21:00]
:PROPERTIES:
:ID: terminology-refactor-task
:END:
- Updated codebase-wide terminology to use Probabilistic/Deterministic Engines.
- Replaced System 1/2 with Probabilistic/Deterministic Engines respectively.
**** DONE Refactor org-skill-policy.org: Concrete Invariants, Conflict Hierarchy, and Auditable Gate
CLOSED: [2026-04-22 Wed 11:50]
:PROPERTIES:
:ID: policy-refactor-concrete-invariants
:END:
- Added explicit Override Hierarchy (Transparency > Autonomy > Bloat > Mentorship > Sustainability).
- Implemented `policy-check-transparency`: blocks user-facing actions without :explanation.
- Implemented `policy-check-autonomy`: flags proprietary domain references as autonomy debt.
- Implemented `policy-check-bloat`: warns on :create-skill actions exceeding size threshold.
- Implemented `policy-check-mentorship`: blocks high-impact actions missing :mentorship-note.
- Implemented `policy-check-sustainability`: logs cloud-provider usage as sustainability debt.
- Implemented `policy-explain`: formats auditable rationale for every policy decision.
- Implemented `policy-find-engineering-standards-gate`: robust cross-package search for standards skill.
- Hardened `policy-deterministic-gate`: never returns NIL silently; always returns action or auditable log.
- Raised skill priority from 100 to 500 to ensure it runs before other deterministic gates.
**** DONE Add Invariant 6 (Modularity) and Harness Boundary Contract to Policy/Manifest
CLOSED: [2026-04-22 Wed 12:10]
:PROPERTIES:
:ID: policy-modularity-invariant
:END:
- Added Modularity as Invariant 6 in `org-skill-policy.org`: general life principle that complexity must live at the edges.
- Implemented `policy-check-modularity`: blocks modifications to protected core paths unless `:modularity-justification` is provided.
- Defined `*modularity-protected-paths*` as project-configurable variable (defaults: harness/, opencortex.asd).
- Updated Override Hierarchy to include Modularity between Bloat and Mentorship.
- Added Harness Boundary Contract section to `harness/manifest.org` documenting primary boundary files and generated artifacts.
- Converted checkbox sub-tasks to hierarchical TODO headlines in gtd.org per GTD standard.
**** DONE Implement `org-skill-lisp-validator` (3-phase deterministic validation gate)
CLOSED: [2026-04-22 Wed 12:30]
:PROPERTIES:
:ID: lisp-validator-implementation
:END:
- Created 3-phase validation pipeline: Structural (O(n) paren scanner), Syntactic (reader with *read-eval* nil), Semantic (whitelist AST walk).
- Implemented `lisp-validator-validate` returning structured plists for machine parsing.
- Exposed `:validate-lisp` cognitive tool for Probabilistic Engine self-correction.
- Replaced `validate-lisp-syntax` in `harness/skills.org` with delegation to the validator.
- Added mandatory validation rule to Probabilistic Engine system prompt in `harness/reason.org`.
- Fixed paren balance and `return-from` compilation errors in org source; tangled and validated in SBCL.
**** DONE Fix Skill Loader to Respect `:tangle` Blocks and Eliminate Circular Dependency
CLOSED: [2026-04-22 Wed 12:45]
:PROPERTIES:
:ID: skill-loader-tangle-fix
:END:
- Updated `load-skill-from-org` in `harness/skills.org` to only collect blocks with `:tangle` directives pointing to runtime `.lisp` files, excluding `tests/` and `test/` paths.
- Added fallback to `validate-lisp-syntax` so it uses a basic reader check when `lisp-validator-validate` is not yet loaded (breaks circular harness->skill dependency).
- Verified full boot: 13/13 skills loaded successfully into SBCL, including `skill-lisp-validator` at priority 900 and `skill-policy` at priority 500.
*** TRACK: SECURITY & CONTAINMENT (The 5-Vector Bouncer Matrix)
**** DONE Implement Path-Based Scoping for File Writes (DNA/State vs Work)
CLOSED: [2026-04-12 Sun 15:15]
:PROPERTIES:
:ID: path-based-scoping
:END:
- Implemented as `path-confinement` invariant in `org-skill-formal-verification.org`.
**** DONE Implement Network Exfiltration Gate (Intercept generic HTTP requests)
CLOSED: [2026-04-12 Sun 15:15]
:PROPERTIES:
:ID: network-exfiltration-gate
:END:
- Implemented as `no-network-exfil` invariant in `org-skill-formal-verification.org`.
**** TODO Implement Secret Exposure Gate (Intercept reads to .env, keys)
*** TRACK: INTELLIGENCE & ACTUATION (The Engines)
**** DONE Verify individual provider track (Anthropic, Gemini, Groq, OpenAI, OpenRouter, Ollama)
CLOSED: [2026-04-11 Sat 15:45]
:PROPERTIES:
:ID: provider-verification-track
:END:
- Added unit tests for each provider in `llm-gateway-tests.lisp`.
- Mocked `dex:post` to verify JSON payload formatting and response parsing.
- Implemented robust `get-nested` helper to handle various provider structures.
- Integrated `llm-gateway` and `credentials-vault` into `opencortex.asd`.
**** TODO Verify org-skill-shell-actuator formal safety harnesses
**** DONE Build Playwright-Python Bridge for high-fidelity browsing
CLOSED: [2026-04-11 Sat 18:30]
:PROPERTIES:
:ID: playwright-bridge-task
:END:
- Created `scripts/browser-bridge.py` (Playwright wrapper).
- Implemented `org-skill-playwright.org`.
- Registered `:browser` cognitive tool (JS-rendering, text extraction, screenshots).
- Updated `Dockerfile` with Python/Playwright dependencies.
- Verified with `playwright-tests.lisp`.
*** TRACK: COMMUNICATION & INTERFACES
**** DONE Implement org-skill-gateway-telegram
CLOSED: [2026-04-11 Sat 16:15]
:PROPERTIES:
:ID: gateway-telegram-task
:END:
- Implemented `org-skill-gateway-telegram.org`.
- Added automated background polling for Telegram GetUpdates.
- Implemented `:telegram` actuator for outbound responses.
- Refactored `org-skill-chat` to be channel-aware.
- Verified with `gateway-telegram-tests.lisp`.
**** DONE Implement org-skill-gateway-signal
CLOSED: [2026-04-11 Sat 16:50]
:PROPERTIES:
:ID: gateway-signal-task
:END:
- Implemented `org-skill-gateway-signal.org` (signal-cli wrapper).
- Added background polling for `signal-cli receive --json`.
- Implemented `:signal` actuator for outbound responses.
- Updated `org-skill-chat` to support Signal channel.
- Verified with `gateway-signal-tests.lisp`.
**** DONE Implement org-skill-gateway-matrix
CLOSED: [2026-04-11 Sat 17:15]
:PROPERTIES:
:ID: gateway-matrix-task
:END:
- Implemented `org-skill-gateway-matrix.org` (Client-Server API).
- Added background polling for `/sync` with token persistence.
- Implemented `:matrix` actuator for `m.room.message` delivery.
- Updated `org-skill-chat` to support Matrix channel and room IDs.
- Verified with `gateway-matrix-tests.lisp`.
*** TRACK: DEPLOYMENT & INFRASTRUCTURE
**** DONE Create Dockerfile and docker-compose.yml for containerized setup
CLOSED: [2026-04-11 Sat 17:30]
:PROPERTIES:
:ID: docker-infra-task
:END:
- Created `Dockerfile` (Debian-based, SBCL + Quicklisp + signal-cli).
- Created `docker-compose.yml` with host-volume mapping for memex.
- Created `docs/deployment.org` guide.
**** TODO Create Bare Metal installation scripts/playbooks
**** TODO Create LXC (Linux Containers) template/guide
**** TODO Create VM Vagrantfiles/Cloud-init configs
*** TRACK: MAINTENANCE & HYGIENE
**** TODO [RECURRING: Monthly] Review and test Infrastructure Dependency Upgrades
:PROPERTIES:
:ID: monthly-infra-audit
:REPEAT_TO_STATE: TODO
:END:
***** TODO Check for new Debian security patches (`apt-get update` check)
***** TODO Check for new `signal-cli` releases (compare vs v0.14.0)
***** TODO Check for new Quicklisp distribution (monthly snapshot)
***** TODO Verification: Update `Dockerfile`, run `docker-compose build --no-cache`, and execute full test suite
***** TODO If all tests pass, commit updated `Dockerfile` and `.asd` dependencies
*** TRACK: COMMUNITY & DOCS
**** TODO Write Quickstart Guide
**** TODO Write Skill Creation Guide
**** TODO Write Architecture Deep-Dive
**** TODO Clean up GitHub repository structure and add CI/CD
**** TODO Create Marketing Material (Landing page copy, diagrams)
**** TODO Draft Release Plan checklist
*** SUB-PROJECT: THE BOOT SEQUENCE (skills.lisp)
:PROPERTIES:
:ID: proj-skill-boot-sequence
:END:
**** DONE Refactor `skills.lisp` into a Micro-Loader (Harness)
CLOSED: [2026-04-12 Sun 19:10]
**** DONE Implement Topological Sort based on `#+DEPENDS_ON:` tags
CLOSED: [2026-04-12 Sun 15:15]
:PROPERTIES:
:ID: topological-sort-skills
:END:
- Implemented in `literate/skills.org`.
**** DONE Enforce `org-skill-system-invariants` as the mandatory Gateway Skill (Loaded first)
CLOSED: [2026-04-12 Sun 15:15]
:PROPERTIES:
:ID: enforce-mandatory-skill
:END:
- Enforced in `initialize-all-skills` in `literate/skills.org`.
**** DONE Formalize the "Minimal Boot Set" (Router, Vision, Steward, Actuator)
CLOSED: [2026-04-12 Sun 19:10]
- Verified during the Minimal Boot Set Verification phase.
** NEXT Engineering Core: Role Automation
:PROPERTIES:
:ID: proj-psf-core
:PROJECT_PATH: $PROJECTS_DIR/psf-core
:Engineering-STATE: D: BUILD
:TRIGGER: next-sibling!
:END:
Drafting the automated behaviors for the Engineering loop.
*** DONE Draft PRD for Engineering Core
:PROPERTIES:
:ID: task-prd-psf-core
:TRIGGER: next-sibling!
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-30 Mon 19:15]
:END:
*** DONE Draft PROTOCOL for Engineering Core
:PROPERTIES:
:ID: task-proto-psf-core
:BLOCKER: previous-sibling!
:TRIGGER: next-sibling!
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-30 Mon 19:25]
:END:
*** DONE Implement and Test Engineering Core Skills
:PROPERTIES:
:ID: task-impl-psf-core
:BLOCKER: previous-sibling!
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-30 Mon 19:30]
:END:
** Agora: Decentralized Social Network
:PROPERTIES:
:ID: agora-project
:END:
*** DONE Create atomic notes for all 10 Agora sections
:PROPERTIES:
:CREATED: [2026-03-16 Mon 14:28]
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-17 Tue 12:00]
:END:
All 14 atomic notes created and cross-referenced.
*** IN-PROGRESS Fill CRITICAL and HIGH gaps [5 CRITICAL / 15 HIGH complete]
**** DONE Section 02: Identity - ALL HIGH priority gaps resolved
**** DONE Section 03: Infrastructure - ALL HIGH priority gaps resolved
*** IN-PROGRESS Fill MEDIUM gaps [14/14 complete]
**** DONE ALL MEDIUM PRIORITY GAPS RESOLVED
**** DONE ALL LOW PRIORITY GAPS RESOLVED (10/10)
**** FINAL STATUS: All Agora specification gaps complete (CRITICAL, HIGH, MEDIUM, LOW)
:PROPERTIES:
:CREATED: [2026-03-17 Tue 23:30]
:END:
:LOGBOOK:
- State "IN-PROGRESS" from "TODO" [2026-03-18 Wed 01:00]
:END:
**** DONE CRITICAL: Contract TypeScript/Protobuf Interfaces → FILLED
:PROPERTIES:
:CREATED: [2026-03-18 Wed 01:00]
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-18 Wed 01:15]
:END:
- INTEGRATED: Reference added to agora-requirements-02-identity.org
- LOCATION: memex/5_projects/agora/agora-contract-schemas.org
**** DONE CRITICAL: Content Flag Schema Validation → FILLED
:PROPERTIES:
:CREATED: [2026-03-18 Wed 01:00]
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-18 Wed 01:25]
:END:
- LOCATION: memex/5_projects/agora/agora-content-flag-schema.org
- PENDING: Integration into agora-requirements-04-the-primitive.org
**** DONE CRITICAL: PDS-to-PDS Sync Protocol → FILLED
:PROPERTIES:
:CREATED: [2026-03-18 Wed 01:00]
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-18 Wed 01:35]
:END:
- LOCATION: memex/5_projects/agora/agora-pds-sync-communication.org
- PENDING: Integration into agora-requirements-03-infrastructure.org
**** DONE CRITICAL: Delta Sync Protocol → FILLED
:PROPERTIES:
:CREATED: [2026-03-18 Wed 01:00]
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-18 Wed 01:50]
:END:
- LOCATION: memex/5_projects/agora/agora-delta-sync-communication.org
- PENDING: Integration into agora-requirements-08-implementation.org
**** DONE CRITICAL: Persona Revocation Protocol → ALREADY-EXISTS
:PROPERTIES:
:CREATED: [2026-03-18 Wed 01:00]
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-18 Wed 02:00]
:END:
- NOTE: Complete specification already in agora-requirements-02-identity.org
- ACTION: Gap was incorrectly flagged; no work required
**** TODO INTEGRATE scattered specifications into requirements files [1/4]
:PROPERTIES:
:CREATED: [2026-03-18 Wed 02:00]
:END:
- NEXT: Move content flag schema into Section 04
- NEXT: Move PDS sync into Section 03
- NEXT: Move delta sync into Section 08
- NEXT: Delete duplicate documents after integration
**** NEXT Fill HIGH priority gaps
:PROPERTIES:
:CREATED: [2026-03-18 Wed 02:00]
:END:
- Relay Discovery Mechanism (Section 03)
- Relay Pricing Logic (Section 03)
- Shamir's Parameters (Section 03)
** Emacs Configuration Refactor
:PROPERTIES:
:ID: emacs-config-refactor
:CREATED: [2026-03-22 Sun 08:00]
:END:
Modularize the monolithic emacs.org into smaller, function-specific files.
*** DONE Obtain exact file path of Emacs configuration file
:PROPERTIES:
:CREATED: [2026-03-22 Sun 08:00]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "NEXT" [2026-03-31 Tue 10:00]
:END:
The exact path is: `/home/amr/.openclaw/workspace/memex/5_projects/dotemacs/emacs.org`
*** DONE Modularize monolithic emacs.org into functional modules (emacs-*.org)
:PROPERTIES:
:CREATED: [2026-03-31 Tue 10:05]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-31 Tue 10:10]
:END:
*** DONE Standardize all paths to ~/memex/ and update bootstrap for Org 10.0-pre
:PROPERTIES:
:CREATED: [2026-03-31 Tue 10:15]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-31 Tue 10:20]
:END:
*** TODO Split emacs.org into functional modules (packages, UI, GTD, etc.)
:PROPERTIES:
:CREATED: [2026-03-22 Sun 08:00]
:END:
** OpenClaw Security Audit
:PROPERTIES:
:ID: openclaw-security-audit
:CREATED: [2026-03-22 Sun 10:00]
:END:
Address security audit findings and harden the system.
*** DONE Harden Docker port bindings (bind to 127.0.0.1)
:PROPERTIES:
:CREATED: [2026-03-22 Sun 14:30]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "NEXT" [2026-03-22 Sun 14:45]
:END:
*** NEXT Enable and configure UFW
:PROPERTIES:
:CREATED: [2026-03-22 Sun 14:30]
:ASSIGNED: Amr (Requires sudo)
:END:
*** TODO Add user 'amr' to 'adm' group for log access
:PROPERTIES:
:CREATED: [2026-03-22 Sun 14:30]
:ASSIGNED: Amr (Requires sudo)
:END:
** Aletheia (Previous Agora Iteration)
:PROPERTIES:
:ID: aletheia-project
:END:
*** TODO Critically analyze Master_Architecture_Document for lessons learned and incorporation into Agora
:PROPERTIES:
:CREATED: [2026-03-21 Sat 09:45]
:STATUS: PENDING USER INSTRUCTION
:NOTES: User to provide pointers before commencing critical reading and analysis. Do not proceed without explicit instruction.
:END:
** Engineering Standards Implementation
:PROPERTIES:
:ID: psf-implementation
:CREATED: [2026-03-22 Sun 15:30]
:END:
Institutionalizing the virtual software house operating system.
*** DONE Draft Engineering Operating System Manual ([[file:notes/personal_software_foundry.org][personal_software_foundry.org]])
:PROPERTIES:
:CREATED: [2026-03-22 Sun 15:30]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "NEXT" [2026-03-22 Sun 15:45]
:END:
*** DONE Update `SOUL.org` with Engineering Mandates
:PROPERTIES:
:CREATED: [2026-03-22 Sun 15:30]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "NEXT" [2026-03-22 Sun 15:45]
:END:
*** DONE Apply Engineering Loop to `opencortex` Phase 1 (Core Loop)
:PROPERTIES:
:CREATED: [2026-03-22 Sun 15:30]
:ASSIGNED: Technical Analyst
:END:
:LOGBOOK:
- State "DONE" from "NEXT" [2026-03-23 Mon 16:30]
:END:
*** TODO Implement `skill-architect.org` to automate `PROTOCOL.org` generation
:PROPERTIES:
:CREATED: [2026-03-31 Tue 10:25]
:ASSIGNED: Architect
:END:
*** TODO Implement `skill-tech-analyst.org` for automated TDD inception
:PROPERTIES:
:CREATED: [2026-03-31 Tue 10:30]
:ASSIGNED: Technical Analyst
:END:
** Infrastructure
:PROPERTIES:
:ID: infrastructure-project
:CREATED: [2026-03-17 Tue 13:40]
:END:
IT infrastructure documentation, security hardening, and operational management.
See project documents: [[file:5_projects/infrastructure/README.org][infrastructure/README.org]]
*** TODO Create current state assessment document
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create risk and vulnerability report
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create infrastructure inventory
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create budget analysis
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create 30/60/90 day roadmap
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create security implementation plan
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create token optimization strategy
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create account management SOPs
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
** Revenue Sustainability
:PROPERTIES:
:ID: revenue-sustainability-project
:CREATED: [2026-03-17 Tue 13:40]
:END:
Business planning and revenue generation strategy.
See project documents: [[file:5_projects/revenue-sustainability/README.org][revenue-sustainability/README.org]]
*** TODO Set up Stripe account (payment processing)
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Set up Wave or Bonsai (invoicing)
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create simple contract template
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Set up time tracking
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create portfolio page (GitHub Pages)
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Set up domain name
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Set up email at domain
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Set up social media (Twitter/X, LinkedIn)
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Create testimonial collection system
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
** Knowledge Management Standards (Atomic Notes + GTD)
:PROPERTIES:
:ID: km-standards-project
:CREATED: [2026-03-31 Tue 10:40]
:END:
Defining and maintaining high-integrity KM and GTD workflows.
*** DONE Upgrade to org-gtd v4.0 (DAG architecture)
:PROPERTIES:
:CREATED: [2026-03-30 Mon 12:00]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-31 Tue 10:45]
:END:
*** DONE Partition legacy inbox into focused files (inbox-*.org)
:PROPERTIES:
:CREATED: [2026-03-30 Mon 14:00]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-31 Tue 10:50]
:END:
*** DONE Fix encoding issues in the new inbox-*.org files
:PROPERTIES:
:CREATED: [2026-03-31 Tue 10:55]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "DONE" from "TODO" [2026-03-31 Tue 11:30]
:END:
*** TODO Perform Automated Metadata Repair on inbox-*.org files
:PROPERTIES:
:CREATED: [2026-03-31 Tue 13:00]
:ASSIGNED: Agent
:END:
Detected ~1,300 entries missing the `:CREATED:` property during the Engineering Phase E (Chaos) audit.
**** TODO Implement inference logic to restore historical timestamps (via Git or context)
**** TODO Batch repair `inbox-emacs.org`, `inbox-atoms.org`, and `inbox-posts.org`
** Agora Gap Verification
:PROPERTIES:
:ID: agora-gap-verification-project
:CREATED: [2026-03-17 Tue 15:15]
:END:
Cross-reference consolidated gap analysis against actual requirement specs to identify real vs. already-addressed gaps.
See project documents: [[file:5_projects/agora/agora-consolidated-gap-analysis.org][agora-consolidated-gap-analysis.org]]
*DECOMPOSITION via Work Breakdown Skill:*
Complexity check failed (51 gaps, 10 files, unpredictable scope). Breaking into atomic verification tasks.
*** DONE [1/7] Verify CRITICAL Gap: Contract TypeScript/Protobuf Interfaces → REAL GAP
:PROPERTIES:
:CREATED: [2026-03-17 Tue 15:15]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "NEXT" from "TODO" [2026-03-17 Tue 15:15]
- State "DONE" from "NEXT" [2026-03-17 Tue 15:59]
:END:
*HOW:* Searched Section 02 for "interface", "type", "struct", "ContractTemplate". Found 5 TypeScript interfaces (all for revocation, not contracts). Line 951 explicitly states "Gap: No sample JSON for each contract type".
*WHAT:* *REAL GAP* - Contracts described conceptually, lack formal TypeScript/Protobuf schemas.
*** DONE [2/7] Verify CRITICAL Gap: Persona Revocation Protocol → IMPLEMENTED
:PROPERTIES:
:CREATED: [2026-03-17 Tue 15:15]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "TODO" from "" [2026-03-17 Tue 15:15]
- State "DONE" from "TODO" [2026-03-17 Tue 15:59]
:END:
*HOW:* Checked Section 02 lines 229-260. Found complete protocol with 3 scenarios (Key Compromise, Persona Retirement, Master Key Compromise), 4-step process, and TypeScript interfaces.
*WHAT:* *ALREADY IMPLEMENTED* - Full protocol specification exists. Gap analysis incorrectly flagged this.
*** DONE [3/7] Verify CRITICAL Gap: PDS-to-PDS Sync Protocol → IMPLEMENTED
:PROPERTIES:
:CREATED: [2026-03-17 Tue 15:15]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "TODO" from "" [2026-03-17 Tue 15:15]
- State "DONE" from "TODO" [2026-03-17 Tue 15:59]
:END:
*HOW:* Checked Section 03 lines 142-180. Found complete sync protocol with Concept, 3 Use Cases (Redundancy, Geographic Distribution, Load Balancing), and Merkle DAG Synchronization architecture.
*WHAT:* *ALREADY IMPLEMENTED* - Protocol fully specified. PDSSyncSession interface documented.
*** DONE [4/7] Verify CRITICAL Gap: Content Flag Schema Validation → REAL GAP
:PROPERTIES:
:CREATED: [2026-03-17 Tue 15:15]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "TODO" from "" [2026-03-17 Tue 15:15]
- State "DONE" from "TODO" [2026-03-17 Tue 15:59]
:END:
*HOW:* Searched Section 05 for "JSON Schema", "flag", "validation". Found 9 flags described narratively (is_public, is_direct, is_ephemeral, etc.) at lines 24-34. No formal JSON Schema found.
*WHAT:* *REAL GAP* - Flags have informal descriptions but lack formal JSON Schema for validation.
*** DOING [5/7] [BATCH] Verify HIGH priority gaps (15 items) - DELEGATED TO SUB-AGENTS
:PROPERTIES:
:CREATED: [2026-03-17 Tue 15:15]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "TODO" from "" [2026-03-17 Tue 15:15]
- State "NEXT" from "TODO" [2026-03-17 Tue 16:04]
- State "DOING" from "NEXT" [2026-03-17 Tue 16:05]
:END:
*HOW:* Delegated to 5 sub-agents for parallel verification per section. Monitoring progress centrally.
*Sub-Agent Assignments:*
- *Sub-Agent 1:* Section 02 Identity (4 HIGH gaps)
- *Sub-Agent 2:* Section 03 Infrastructure (3 HIGH gaps)
- *Sub-Agent 3:* Section 05 Public Space (4 HIGH gaps)
- *Sub-Agent 4:* Section 06 Advanced Integration (2 HIGH gaps)
- *Sub-Agent 5:* Sections 08-09 Implementation/Strategy (2 HIGH gaps)
*Current focus:* Orchestrating sub-agent verification. CRITICAL gaps complete (2 REAL, 2 IMPLEMENTED).
*** TODO [BATCH] Verify MEDIUM priority gaps (14 items)
:PROPERTIES:
:CREATED: [2026-03-17 Tue 15:15]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "TODO" from "" [2026-03-17 Tue 15:15]
:END:
Cross-reference 14 MEDIUM gaps. Defer until HIGH gaps complete.
*** TODO Generate verified gap report
:PROPERTIES:
:CREATED: [2026-03-17 Tue 15:15]
:ASSIGNED: Agent
:END:
:LOGBOOK:
- State "TODO" from "" [2026-03-17 Tue 15:15]
:END:
Create summary documenting: which gaps are REAL (need implementation) vs. ALREADY-IMPLEMENTED (documentation only) vs. PARTIAL (needs completion).
** Token Optimization
:PROPERTIES:
:ID: token-optimization-project
:CREATED: [2026-03-17 Tue 13:40]
:END:
Cost-effective LLM usage strategy and implementation.
See project documents: [[file:5_projects/token-optimization/README.org][token-optimization/README.org]]
*** TODO Configure Gemini as primary provider
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Set up OpenRouter fallback
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Implement basic usage tracking
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Document current baseline
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Add smart routing logic
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Implement context compression
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO Set up budget alerts
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
*** TODO A/B test model choices
:PROPERTIES:
:CREATED: [2026-03-17 Tue 13:40]
:END:
** Engineering Skill: Architect Agent
:PROPERTIES:
:ID: proj-skill-architect
:PROJECT-PATH: $PROJECTS_DIR/org-skill-architect
:Engineering-STATE: F: MEMORY
:CREATED: [2026-03-31 Tue 15:45]
:END:
DONE - Formalized as a Universal Literate Note.
** Engineering Skill: Technical Analyst Agent
:PROPERTIES:
:ID: proj-skill-tech-analyst
:PROJECT-PATH: $PROJECTS_DIR/org-skill-tech-analyst
:Engineering-STATE: F: MEMORY
:CREATED: [2026-03-31 Tue 15:45]
:END:
DONE - Formalized as a Universal Literate Note.
** Engineering Skill: Engineering Standards
:PROPERTIES:
:ID: proj-skill-project-foundry
:PROJECT-PATH: $PROJECTS_DIR/org-skill-project-foundry
:Engineering-STATE: F: MEMORY
:CREATED: [2026-03-31 Tue 15:45]
:END:
DONE - Formalized as a Universal Literate Note.
** Engineering Skill: Scribe Agent
:PROPERTIES:
:ID: proj-skill-scribe
:PROJECT-PATH: $PROJECTS_DIR/org-skill-scribe
:Engineering-STATE: F: MEMORY
:CREATED: [2026-03-31 Tue 15:45]
:END:
DONE - Formalized as a Universal Literate Note.
** Engineering Skill: Memex Manager
:PROPERTIES:
:ID: proj-skill-memex
:PROJECT-PATH: $PROJECTS_DIR/org-skill-memex
:Engineering-STATE: F: MEMORY
:CREATED: [2026-03-31 Tue 15:45]
:END:
DONE - Formalized as a Universal Literate Note.
** Engineering Skill: Infrastructure & Providers (Batch refactor)
:PROPERTIES:
:ID: proj-skill-batch-refactor
:Engineering-STATE: F: MEMORY
:CREATED: [2026-03-31 Tue 15:45]
:END:
DONE - Refactored 28 infrastructure, provider, and intelligence skills into the Universal Note architecture.
* Incubate
:PROPERTIES:
:ID: gtd-incubate
:END:
** TODO Arabic Classics :arabic:books:literature:egypt:
:PROPERTIES:
:ID: Arabic-Classics-2024-02-05-13-48-07
:ORG_GTD_TIMESTAMP: <2025-01-01>
:CATEGORY: Egypt
:END:
<2025-01-01>
[2023-05-16 Tue 22:29]
The Arabic Classics project builds on the fact that the majority of books in Arabic are yet to come in the public domain. With 75 years of copyright for the authors estate in Egypt, book of authors who died in 1950 are just about to come into the public domain next year in 2025.
The will create and publish electronic anthologies, one for each author, bringing together all their work, prefaced by an in-depth biography, not dissimilar to the Delphi Collection.
Each year, the project will go forward in time as more works enter the public domain, and a number of years backwards until the beginning of Arabic literature (and potentially neighboring languages): first in increments of 10 years, then 25, then a century or more covered each year.
- Authors
- Specs
** TODO Open dog
:PROPERTIES:
:ID: Open-dog-2024-02-04-18-16-26
:ORG_GTD_TIMESTAMP: <2025-01-01>
:CATEGORY: Atoms
:END:
<2025-01-01>
<2025-01-01>
[2024-02-04 Sun 17:44]
** TODO Cartesian robot with changing heads
:PROPERTIES:
:ID: Cartesian-robot-with-changing-heads-2024-02-04-18-17-06
:ORG_GTD_TIMESTAMP: <2025-01-01>
:CATEGORY: Atoms
:END:
<2025-01-01>
<2025-01-01>
[2024-02-04 Sun 17:44]
** TODO Modular synth :music:
:PROPERTIES:
:ID: Modular-synth-2024-02-04-18-17-25
:ORG_GTD_TIMESTAMP: <2025-01-01>
:CATEGORY: Atoms
:END:
<2025-01-01>
<2025-01-01>
[2024-02-04 Sun 17:45]
** TODO OCR Permaculture Design Manual :permaculture:
:PROPERTIES:
:ID: OCR-Permaculture-Design-Manual-2024-02-04-18-18-36
:ORG_GTD_TIMESTAMP: <2025-01-01>
:CATEGORY: Writing
:END:
<2025-01-01>
<2025-01-01>
<2025-01-01>
[2024-02-04 Sun 17:47]
** TODO Off-grid field guide
:PROPERTIES:
:CREATED: [2024-03-01 Fri 12:13]
:ID: Off-grid-field-guide-2024-07-03-10-03-08
:ORG_GTD_TIMESTAMP: <2025-01-01>
:CATEGORY: Writing
:END:
<2025-01-01>
A modular manual of different areas to go with different activities. Fits in the travelers notebook
* Someday / Future
** Architecture Astronaut Archive
*** TODO Implement Privacy-Aware Background Indexer (Local hashes for @personal, Semantic for others)
*** TODO Implement communication protocol Backpressure Handling (Queue bounds and BUSY frames in communication.lisp)
*** TODO Implement Cognitive Cycle "Rut" Recovery (Dynamic Escalation in org-skill-lisp-validator)
*** TODO Implement Asynchronous Event Bus for Telemetry (core.lisp)
*** TODO Implement Memory Eviction and Lazy Loading (LRU Cache in memory.lisp)
*** TODO Implement Two-Speed Reflection (Immediate :post-action + Latent Heartbeat)
*** TODO Implement Context-Aware Routing (Autonomous Foveal Switching on intent shift)
*** TODO Implement Intent-Shift Detector (Semantic topic-shift flagging in neuro.lisp)
*** TODO Implement Cognitive Economics (Dynamic LLM routing based on 2x2 matrix complexity)
*** TODO Implement Micro-Prolog Logic Engine (Lisp-native unification & pattern matching for Memory)
*** TODO Implement Autonomous Logic Synthesis (Hybrid SubSys2: Neural pattern detection + Symbolic rule generation)
*** TODO Implement Continuous Vibe (Sentiment-weighted personality in system-prompt)
*** TODO Implement Search-Before-Think Bridge (Autonomous target-id population via vector search in perceive-gate)
*** TODO Implement Belief Revision & Reconciliation (Audit deltas for contradictions in scribe-engine.lisp)
*** TODO Implement Real-Time Entity Linking (Automatic profile loading for People/Objects in perceive-gate)
*** TODO Implement Time-Series Sensor Skill (Signal-to-Symbol distillation for telemetry)
*** TODO Implement Autonomous Image Analysis (Send image bytes to LLM for nodes with attachments in llm-gateway.lisp)
*** TODO Draft comprehensive Threat Model for Agentic Containment
*** TODO Implement Swarm Lateral Movement Gate (Intercept global state changes)
*** TODO Implement Skill Graph Visualizer in Web Dashboard
*** TODO Implement Skill Capability Negotiation (Pre-flight tool check)
*** TODO Add Resource Jailing (Timeouts and Memory Quotas for Skills)
** SUB-PROJECT: COGNITIVE BENCHMARKING (Claw-Code Distillation)
*** SUB-PROJECT: COGNITIVE BENCHMARKING (Claw-Code Distillation)
:PROPERTIES:
:ID: proj-claw-code-benchmarking
:END:
**** TODO Map Claw-Code Tool-Use Protocol (How it handles multi-tool steps)
**** TODO Distill Claw-Code File Editing Techniques (Surgical diffing vs overwriting)
**** TODO Analyze Claw-Code History Pruning (How it stays within context limits)
**** TODO Write a comprehensive Note in notes/ on "Lessons from the Rust Agent Explosion"
**** TODO Implement `org-skill-history-pruner` based on claw-code context checkpointing
**** TODO Implement `org-skill-tool-router` based on claw-code semantic tool selection
** Lisp Machine Bootstrap
:ID: lisp-machine-bootstrap
:CREATED: [2026-03-22 Sun 14:15]
The "Endgame": Hardware-native Lisp machine implementation.
*** TODO Research existing Lisp-on-FPGA implementations
:CREATED: [2026-03-22 Sun 14:15]
*** TODO Define minimum hardware-native Lisp ISA (Instruction Set Architecture)
*** TODO Draft CLOSOS-style Virtual Machine specification
:CREATED: [2026-03-22 Sun 17:30]
*** TODO Investigate Single Address Space and Multiple Environments in CL
:PROPERTIES:
:ID: gtd-someday
:END:
** The Holy Grail: Unified Lisp Environment
The endgame of the Lisp Machine Mandate. Eliminate context-switching by unifying the browser, the agent, and the editor into a single Common Lisp image.
*** TODO [Grail 1] Emacs xwidget-webkit integration
Embed a full WebKit engine inside an Emacs buffer. Allow the agent to interact with the live DOM via the communication protocol socket.
*** TODO [Grail 2] Lisp-native Agentic Browser
Build a 'Neural Browser' in CL. Instead of HTML, it renders websites as a navigable Org-mode DAG. Mark headlines TODO to trigger clicks/fills.
*** TODO [Grail 3] Full Common Lisp Emacs Implementation
The ultimate platform. Rewrite the editor core in SBCL (Lem/Hemlock style). The browser becomes a native library, allowing direct memory inspection of the web.
* Habits
:PROPERTIES:
:ID: gtd-habits
:END:
* TODO Improve stealth browsing capabilities to bypass 502/bot detection :system:research:
Reference in New Issue View Git Blame Copy Permalink