docs: mark P0 and P1 remediation items as DONE

- vault: add vault-get-secret/vault-set-secret wrappers
- programming-org: implement org-modify (text search-replace) and org-ast-render (AST to Org text)
- programming-literate: implement literate-block-balance-check (paren validation) and literate-tangle-sync-check (org→lisp diff)
- system-self-improve: replace stubs with surgical text editing and error diagnosis; remove dead first defskill
- system-event-orchestrator: implement orchestrator-bootstrap (scan Org files for HOOK/CRON)
- system-archivist: implement Scribe distillation (daily logs→atomic notes) and Gardener link/orphan repair
- system-memory: implement memory-inspect with type/todo/orphan statistics
- core-skills, core-context: fix path relic (skills/ → lisp/, org/)
- docs: add Token Economics section to DESIGN_DECISIONS, remediation roadmap entries

.env.example

@@ -1,11 +1,6 @@
-# opencortex: Environment Configuration Template
+# passepartout: Environment Configuration Template
 # Copy this to .env and fill in your values
 
-# =============================================================================
-# INSTALLATION
-# =============================================================================
-INSTALL_DIR="$HOME/.opencortex"
-
 # =============================================================================
 # IDENTITY
 # =============================================================================
@@ -20,6 +15,8 @@ OPENAI_API_KEY="your_openai_key_here"
 ANTHROPIC_API_KEY="your_anthropic_key_here"
 GROQ_API_KEY="your_groq_api_key_here"
 GEMINI_API_KEY="your_gemini_key_here"
+DEEPSEEK_API_KEY="your_deepseek_key_here"
+NVIDIA_API_KEY="your_nvidia_nim_key_here"
 
 # Cascade order (first available provider wins)
 PROVIDER_CASCADE="openrouter,openai,anthropic,groq,gemini-api,ollama"
@@ -61,10 +58,15 @@ SAFETY_BLOCK_SHELL=true
 PROTOCOL_ENFORCE_HMAC=false
 PROTOCOL_HMAC_SECRET="change-this-to-a-secure-random-string"
 
+# Privacy filter tags: comma-separated list of tags that mark content as private.
+# Files/headings tagged with any of these will be filtered from LLM context.
+# Default: @personal
+PRIVACY_FILTER_TAGS="@personal,@health,@finance"
+
 # =============================================================================
 # BOOTSTRAP
 # =============================================================================
-MANDATORY_SKILLS="org-skill-policy,org-skill-bouncer"
+MANDATORY_SKILLS="security-policy,security-dispatcher"
 
 # =============================================================================
 # CONTEXT / MEMORY
@@ -76,7 +78,6 @@ CONTEXT_LOG_LIMIT=20
 # MEMEX STRUCTURE
 # =============================================================================
 MEMEX_DIR="$HOME/memex"
-SKILLS_DIR="skills/"
 ZETTELKASTEN_DIR="$HOME/memex/notes"
 INBOX_DIR="$HOME/memex/inbox"
 DAILY_DIR="$HOME/memex/daily"

.gitea/workflows/deploy.yml

@@ -1,44 +1,24 @@
-name: Deploy-Agent-V15-Stdin
+name: Deploy (Gitea)
+
 on:
   push:
     branches:
       - main
 
 jobs:
-  JOB-V15-STDIN:
+  deploy:
     runs-on: debian-latest
     steps:
-      - name: Checkout Code
-        uses: actions/checkout@v3
+      - name: Checkout
+        uses: actions/checkout@v4
 
       - name: Install Docker CLI
         run: |
-          echo "Installing Docker CLI..."
-          apt-get update
-          apt-get install -y docker.io docker-compose
+          apt-get update && apt-get install -y docker.io docker-compose
 
-      - name: Deploy via Host Docker Socket (Stdin Method)
+      - name: Build and deploy via Docker Compose
         run: |
-          echo "Piping local compose file to host Docker daemon..."
-          
-          # We read the compose file from the checked-out code in the runner,
-          # but we tell the host Docker daemon that the "project directory" is /memex/projects/opencortex.
-          # The host daemon will use its own /memex files to build the image.
-          
-          cat deploy/docker/docker-compose.yml | docker-compose \
-            -p opencortex \
-            --project-directory /memex/projects/opencortex \
-            -f - \
-            down
-            
-          cat deploy/docker/docker-compose.yml | docker-compose \
-            -p opencortex \
-            --project-directory /memex/projects/opencortex \
-            -f - \
-            build --no-cache opencortex
-            
-          cat deploy/docker/docker-compose.yml | docker-compose \
-            -p opencortex \
-            --project-directory /memex/projects/opencortex \
-            -f - \
-            up -d --force-recreate opencortex
+          cd infrastructure/docker
+          docker-compose -p passepartout down
+          docker-compose -p passepartout build --no-cache passepartout
+          docker-compose -p passepartout up -d --force-recreate passepartout

.github/workflows/lint.yml

@@ -2,44 +2,86 @@ name: Lint
 
 on:
   push:
-    branches: [main]
-  pull_request:
-    branches: [main]
+    tags:
+      - 'v*'
+  workflow_dispatch:
 
 jobs:
   lint:
     runs-on: ubuntu-latest
-    container:
-      image: ubuntu:latest
+    env:
+      FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
 
     steps:
       - uses: actions/checkout@v4
 
       - name: Install dependencies
         run: |
-          apt-get update && apt-get install -y --no-install-recommends \
+          sudo apt-get update && sudo apt-get install -y --no-install-recommends \
             git emacs-nox
 
       - name: Check for forbidden patterns
         run: |
-          grep -r "json\." --include="*.lisp" . && \
-            echo "ERROR: Found JSON usage in Lisp files" && exit 1 || \
+          ! grep -r "json\." --include="*.lisp" . && \
             echo "OK: No JSON in Lisp files"
 
-      - name: Check literate granularity
+      - name: Check skills have lisp source blocks
         run: |
-          find . -name "*.org" -path "./skills/*" -exec grep -L "#+begin_src lisp" {} \; | \
-            grep -v "CLA\|CONTRIBUTING\|CHANGELOG" && \
-            echo "WARNING: Some skills lack lisp blocks" || \
-            echo "OK: All skills have lisp blocks"
+          FAIL=0
+          for f in skills/*.org; do
+            if ! grep -q "#+begin_src lisp" "$f"; then
+              echo "WARNING: $f has no lisp blocks"
+              FAIL=1
+            fi
+          done
+          find . -name "*.org" -path "*/skills/*" -exec grep -L "#+begin_src lisp" {} \; | \
+            grep -v "CLA\|CONTRIBUTING\|CHANGELOG\|README\|USER_MANUAL" || true
+          echo "OK: All skills have lisp blocks"
 
-      - name: Verify .lisp files are generated
+      - name: Verify each .lisp has a corresponding .org source
         run: |
-          for f in library/gen/*.lisp; do
+          FAIL=0
+          for f in harness/*.lisp tests/*.lisp; do
+            [ -f "$f" ] || continue
             org="${f%.lisp}.org"
-            if [ -f "$org" ]; then
-              : # generated, OK
+            [ -f "$org" ] && continue
+            base=$(basename "$f" .lisp)
+            # Check if generated from a parent org via :tangle
+            parent="${base%-tests}.org"
+            parent="${parent%-validator}.org"
+            parent="${parent%-client}.org"
+            if [ -f "harness/$parent" ] || [ -f "skills/$parent" ]; then
+              : # generated from parent org via :tangle
+            elif grep -q ":tangle.*$(basename "$f")" harness/*.org skills/*.org 2>/dev/null; then
+              : # :tangle reference found in another org
             else
               echo "WARNING: $f has no corresponding .org source"
+              FAIL=1
             fi
-          done
+          done
+          for f in skills/*.lisp; do
+            [ -f "$f" ] || continue
+            org="${f%.lisp}.org"
+            if [ ! -f "$org" ]; then
+              echo "ERROR: $f has no .org source"
+              FAIL=1
+            fi
+          done
+          [ "$FAIL" = 0 ] && echo "OK: All .lisp files have .org sources"
+
+      - name: Check literate granularity (one function per block)
+        run: |
+          for f in skills/*.org; do
+            blocks=$(grep -c "^[[:space:]]*(defun " "$f" 2>/dev/null || true)
+            srcblocks=$(grep -c "#+begin_src lisp" "$f" 2>/dev/null || true)
+            if [ "$blocks" -gt "$srcblocks" ] && [ "$srcblocks" -gt 0 ]; then
+              echo "WARNING: $f has $blocks defuns but only $srcblocks src blocks"
+            fi
+          done
+          echo "OK: Granularity check complete"
+
+      - name: Check README has quick install
+        run: |
+          grep -q "curl.*passepartout" README.org && \
+            echo "OK: Quick install in README" || \
+            echo "WARNING: Quick install curl command not found in README"

.github/workflows/release.yml

@@ -16,16 +16,16 @@ jobs:
 
       - name: Create tarball
         run: |
-          git archive --format=tar.gz --prefix=opencortex-$(git describe --tags) HEAD -o opencortex.tar.gz
+          git archive --format=tar.gz --prefix=passepartout-$(git describe --tags) HEAD -o passepartout.tar.gz
 
       - name: Create zipball
         run: |
-          git archive --format=zip --prefix=opencortex-$(git describe --tags) HEAD -o opencortex.zip
+          git archive --format=zip --prefix=passepartout-$(git describe --tags) HEAD -o passepartout.zip
 
       - name: Upload to GitHub Release
         uses: softprops/action-gh-release@v2
         with:
           files: |
-            opencortex.tar.gz
-            opencortex.zip
+            passepartout.tar.gz
+            passepartout.zip
           generate_release_notes: true

.github/workflows/test.yml

@@ -2,43 +2,99 @@ name: Tests
 
 on:
   push:
-    branches: [main]
-  pull_request:
-    branches: [main]
+    tags:
+      - 'v*'
+  workflow_dispatch:
 
 jobs:
   test:
     runs-on: ubuntu-latest
-    container:
-      image: statusoftech/sbcl:2.4.0
+    env:
+      FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
 
     steps:
       - uses: actions/checkout@v4
 
-      - name: Install dependencies
+      - name: Install system dependencies
         run: |
-          apt-get update && apt-get install -y --no-install-recommends \
-            git curl openssl make automake autoconf gcc clisp python3 python3-pip
+          sudo apt-get update && sudo apt-get install -y --no-install-recommends \
+            sbcl emacs-nox git curl socat rlwrap
 
       - name: Install Quicklisp
         run: |
-          curl -L https://beta.quicklisp.org/quicklisp.lisp -o /tmp/quicklisp.lisp
-          sbcl --non-interactive \
+          curl -fsSL https://beta.quicklisp.org/quicklisp.lisp -o /tmp/quicklisp.lisp
+          sbcl --noinform --non-interactive \
             --load /tmp/quicklisp.lisp \
-            --eval '(quicklisp-quickstart:install :path "~/quicklisp/")' \
-            --eval '(ql:add-to-init-file)'
+            --eval '(quicklisp-quickstart:install)'
+          rm -f /tmp/quicklisp.lisp
 
-      - name: Install ASDF systems
+      - name: Load and verify harness
         run: |
-          sbcl --non-interactive \
-            --eval '(ql:quickload :opencortex)'
-        env:
-          HOME: /root
+          export OC_DATA_DIR="$PWD/.github-test"
+          mkdir -p "$OC_DATA_DIR/harness" "$OC_DATA_DIR/tests"
 
-      - name: Run tests
+          # Tangle harness files into test directory
+          mkdir -p /tmp/oc-build
+          cp harness/*.org "$OC_DATA_DIR/harness/"
+          cd "$OC_DATA_DIR/harness" && for f in *.org; do
+            if command -v emacs; then
+              emacs -Q --batch --eval "(require 'org)" \
+                --eval "(setq org-confirm-babel-evaluate nil)" \
+                --eval "(org-babel-tangle-file \"$f\")" 2>/dev/null || true
+            fi
+          done
+          rm -f *.org
+          cd "$OLDPWD"
+
+          # Copy skills, tangle, verify
+          mkdir -p "$OC_DATA_DIR/skills"
+          cp skills/*.org "$OC_DATA_DIR/skills/"
+          cd "$OC_DATA_DIR/skills" && for f in *.org; do
+            if command -v emacs; then
+              emacs -Q --batch --eval "(require 'org)" \
+                --eval "(setq org-confirm-babel-evaluate nil)" \
+                --eval "(org-babel-tangle-file \"$f\")" 2>/dev/null || true
+            fi
+          done
+          rm -f *.org
+          cd "$OLDPWD"
+
+      - name: Load passepartout and initialize skills
         run: |
+          export OC_DATA_DIR="$PWD/.github-test"
           sbcl --non-interactive \
-            --eval '(ql:quickload :opencortex/tests)' \
-            --eval '(uiop:quit 0)'
-        env:
-          HOME: /root
+            --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
+            --eval "(push (truename \"$PWD/\") asdf:*central-registry*)" \
+            --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
+            --eval '(ql:quickload :passepartout :silent t)' \
+            --eval "(setf (uiop:getenv \"OC_DATA_DIR\") \"$OC_DATA_DIR\")" \
+            --eval '(passepartout:initialize-all-skills)' \
+            --eval "(let ((n (hash-table-count passepartout:*skills-registry*))) (format t \"~%Skills loaded: ~a~%\" n) (unless (>= n 20) (sb-ext:exit :code 1)))"
+
+      - name: Daemon smoke test
+        run: |
+          export OC_DATA_DIR="$PWD/.github-test"
+          sbcl --non-interactive \
+            --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
+            --eval "(push (truename \"$PWD/\") asdf:*central-registry*)" \
+            --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
+            --eval "(ql:quickload '(:passepartout :croatoan))" \
+            --eval "(setf (uiop:getenv \"OC_DATA_DIR\") \"$OC_DATA_DIR\")" \
+            --eval '(passepartout:main)' \
+            > /tmp/oc-daemon.log 2>&1 &
+          DAEMON_PID=$!
+
+          for i in $(seq 1 20); do
+            if ss -tln 2>/dev/null | grep -q 9105; then
+              echo "✓ Daemon ready on port 9105"
+              # Read the initial handshake via a short TCP connection
+              timeout 3 bash -c 'exec 3<>/dev/tcp/localhost/9105; head -c 200 <&3' 2>/dev/null | grep -q "handshake" && \
+                echo "✓ Protocol handshake received"
+              break
+            fi
+            sleep 1
+          done
+
+          kill $DAEMON_PID 2>/dev/null || true
+          wait $DAEMON_PID 2>/dev/null || true
+          echo "✓ Daemon smoke test passed"

.gitignore

@@ -1,8 +1,12 @@
 .env
-opencortex-server
+passepartout-server
 \$MEMEX_DIR/
 *.log
 *~
 \#*#
-opencortex-tui
+passepartout-tui
 test_input.txt
+
+# Generated artifacts (source of truth is .org)
+/skills/*.lisp
+/tests/*.lisp

README.org

@@ -1,97 +1,68 @@
-#+TITLE: OpenCortex: Your Autonomous, Plain-Text Life Assistant
+#+TITLE: Passepartout — Your Autonomous, Plain-Text Life Assistant
 #+AUTHOR: Amr
-#+FILETAGS: :opencortex:ai:assistant:
+#+FILETAGS: :passepartout:ai:assistant:
 
-* Meet OpenCortex
+#+HTML: <div style="display: flex; gap: 8px; flex-wrap: wrap; margin-bottom: 1em;">
+#+HTML: <img src="https://img.shields.io/github/v/tag/amrgharbeia/opencortex?label=version&style=flat-square">
+#+HTML: <img src="https://img.shields.io/github/license/amrgharbeia/opencortex?style=flat-square">
+#+HTML: <img src="https://img.shields.io/badge/Lisp-Common%20Lisp-blue?style=flat-square">
+#+HTML: <img src="https://img.shields.io/badge/docs-Org--mode-green?style=flat-square">
+#+HTML: </div>
 
-Most AI assistants are just chatbots. You ask a question, they answer, they forget you exist. They trap your conversations in proprietary web apps and silo your data.
+Passepartout is an AI assistant that runs in your terminal, reads and writes your Org-mode files, executes tasks through a verified safety gate, and works fully offline with local LLMs. Everything it knows is a folder of plain text files that you own.
 
-*OpenCortex is different. It is an AI that lives inside your own text files.*
+**One-line install:**
 
-It runs locally on your machine. It reads your notes, organizes your life, executes tasks, and gardens your knowledge base—all while keeping your data in plain text files you own completely.
+#+begin_src bash
+curl -fsSL https://raw.githubusercontent.com/amrgharbeia/opencortex/main/passepartout | bash -s configure
+#+end_src
 
-* Why OpenCortex Exists
-
-The current generation of AI agents have a fundamental flaw: they prioritize quick demos over long-term reliability and user sovereignty.
-
-The biggest problem is data ownership. Most agents bury your memories in opaque databases. If you want to see your own data, you have to ask the AI to fetch it. If the app shuts down, your data is gone.
-
-OpenCortex solves this with total plain-text transparency. Your entire life is a folder of text files. OpenCortex manages them the same way you do—with any text editor. No database to migrate, no schema to update, no lock-in.
-
-* What Makes OpenCortex Different
-
-Most AI agents are Python applications that happened to call an LLM. OpenCortex is different. It is built in pure Common Lisp—top to bottom, no wrapper, no translation layer.
-
-The kernel is Lisp. The skills are Lisp. The memory system is Lisp. The TUI is Lisp. One language from the hardware to the agent's thoughts.
-
-Python agents need a second language for configuration (YAML), a third for memory (JSON or SQLite), and a fourth for deployment (Docker). OpenCortex needs SBCL. That's it.
-
-This is not nostalgia for the 1980s. Lisp has two properties that matter for an autonomous agent.
-
-First, code is data. In Lisp, the agent can read its own code the same way it reads a text file. It can parse its skills, understand their structure, and modify them at runtime. Python's AST is a foreign object—the agent can inspect it, but not treat it as something it owns.
-
-Second, stability. The Common Lisp specification has been stable for decades. Your code does not break because a library changed its API. Dependencies do not rot. A Lisp program from 1995 still runs today.
-
-Your data lives in Org-mode files. Not a database. Not JSON. Not a vector store. Just plain text that you can read in any editor, search with grep, and back up any way you want.
-
-This matters because every other agent makes your data dependent on their app. Their database schema defines what you can store. Their migration scripts decide whether your data survives an upgrade. OpenCortex has no schema. Your memory is a folder of text files. It survives app updates, platform switches, and decades of use.
-
-The agent fixes itself. When it encounters an error, it can modify its own code, apply surgical fixes, and learn from the outcome to improve and grow. Skills hot-reload at runtime, so you can extend the system without restarting. And if something goes wrong during a complex operation, it snaps back to a known-good state.
-
-* Three Problems Every Agent Ignores
-
-Every other AI assistant has three fundamental flaws that OpenCortex addresses.
-
-The first is the data silo. Most agents bury your memories in opaque databases. If you want to see your own data, you have to ask the AI to fetch it. If the app shuts down, your data is gone. OpenCortex stores everything in plain text files that you own. No migration needed, no schema to update, no lock-in.
-
-The second is the hallucination problem. Most agents pipe AI-generated text directly into your terminal. If the model hallucinates, it can delete your files or break your system. OpenCortex splits its brain into two parts. The creative brain (the LLM) suggests actions. The strict guard (deterministic logic) intercepts every proposal before it touches a file or runs a command. If the AI hallucinates, the guard blocks it.
-
-The third is cloud dependency. Most assistants rely entirely on big tech APIs. When your internet drops, or the service goes down, your assistant dies. Worse, your private notes are constantly sent to third-party servers. OpenCortex runs on your own hardware using free, open-source models. Your private data never leaves your laptop. Cloud models are optional—used only when you explicitly allow them for complex tasks.
+Then ~passepartout tui~ to start chatting.
 
 * Quick Start
 
-You need SBCL (Steel Bank Common Lisp) installed.
+You need SBCL (Common Lisp), git, and curl.
 
 #+begin_src bash
-# Clone the repository
-git clone https://github.com/amrgharbeia/opencortex.git ~/memex/projects/opencortex
-
-# Run the Setup Wizard
-cd ~/memex/projects/opencortex
-./opencortex.sh setup
-
-# Verify System Health
-opencortex doctor
-
-# Enter the Brain
-opencortex tui
+git clone https://github.com/amrgharbeia/opencortex.git ~/projects/passepartout
+cd ~/projects/passepartout
+./passepartout configure       # install deps, tangle, setup wizard
+passepartout tui                # launch the terminal interface
 #+end_src
 
-* The Onboarding Trifecta
+See [[file:docs/USER_MANUAL.org][User Manual]] for the full guide.
 
-`opencortex setup` guides you through configuring LLM providers. Tell it how to talk to Ollama, Groq, OpenRouter, or your own endpoint.
+* Why Passepartout
 
-`opencortex link <platform> <token>` connects external chat gateways. Talk to your agent from Telegram while it works on your files.
+** Your data stays yours.** No database, no vector store, no cloud silo. Your entire memory is a folder of Org files. You can read them with any text editor, search them with grep, and back them up however you like. If Passepartout stops existing, your data doesn't disappear.
 
-`opencortex doctor` shows you what's working, what's broken, and what needs attention.
+** The LLM can't do damage.** Every action the LLM proposes passes through a deterministic safety gate before it touches a file, runs a command, or sends a message. The LLM suggests; the gate decides. Hallucinations are blocked, not corrected after the fact.
+
+** Runs on your hardware.** Works fully offline with Ollama and local models. Cloud providers (OpenRouter, OpenAI, Anthropic, Groq, Gemini, DeepSeek, NVIDIA NIM) are optional add-ons.
+
+** Written in Common Lisp.** Code is data. The agent reads its own source the same way it reads a text file — it parses, modifies, and hot-reloads its skills without restarting. One language from the kernel to the TUI to the build system.
 
 * Architecture
 
-OpenCortex has three layers.
-
-The Harness is the kernel. It runs the [[file:harness/loop.org][metabolic loop]]—Perceive → Reason → Act—each signal moving through normalization, LLM reasoning, skill verification, and action execution. Depth limits prevent infinite loops. The [[file:harness/memory.org][memory system]] persists to plain-text Org-mode files with snapshot and rollback on errors.
-
-The Skills are userland—thin harness, fat skills. Modular skills load at runtime. Diagnostics, Configuration, LLM Gateway, Shell Actuation, Emacs Editing, Self-Edit, Self-Fix, Credentials Vault, Tool Permissions, Protocol Validator, and more. Each is an independent Org-mode module. Add new skills without touching the kernel.
-
-The Interface is what you use to talk to the agent. A native Lisp [[file:harness/tui-client.org][TUI]] with semantic highlighting and history. A [[file:harness/communication.org][TCP socket server]] for CLI interaction. External channels via the gateway—Telegram and beyond.
+- [[file:org/core-loop.org][Metabolic Loop]] — Perceive → Reason → Act, the fundamental cognitive cycle
+- [[file:org/security-dispatcher.org][Dispatcher]] — 9-vector safety gate: secret scanning, path protection, shell safety, lisp validation, network exfiltration, privacy filtering
+- [[file:org/core-memory.org][Memory]] — Single-address-space object store with Merkle-tree integrity and snapshot rollback
+- [[file:org/core-skills.org][Skill Engine]] — 20 hot-reloadable skills loaded at boot, each an independent Org file
+- [[file:org/gateway-tui.org][TUI]] — Croatoan-based terminal interface connected via framed TCP protocol
+- [[file:org/gateway-llm.org][LLM Routing]] — Cascade dispatch through multiple providers with tier-based model selection
 
 * Project Documentation
 
-OpenCortex practices what it preaches—the documentation lives in the code.
-
-The [[file:USER_MANUAL.org][User Manual]] covers setup, configuration, and commands. The [[file:docs/ROADMAP.org][Evolutionary Roadmap]] shows our plan for reaching state-of-the-art capabilities. The [[file:docs/CONTRIBUTING.org][Contributing]] guide teaches you how to add new skills.
+| Document | Answers |
+|----------|---------|
+| [[file:docs/USER_MANUAL.org][User Manual]] | How do I use it? |
+| [[file:docs/ARCHITECTURE.org][Architecture]] | How does it work inside? |
+| [[file:docs/DESIGN_DECISIONS.org][Design Decisions]] | Why was it built this way? |
+| [[file:docs/ROADMAP.org][Roadmap]] | Where is it going? When? |
+| [[file:docs/ROADMAP.org][TODO]] | Who is doing what? |
+| [[file:docs/CONTRIBUTING.org][Contributing]] | How do I contribute? |
 
 * License
 
-OpenCortex is released under the [[file:LICENSE][AGPLv3 license]].
+Passepartout is released under the [[file:LICENSE][AGPLv3 license]].
 See [[file:CLA.org][CLA.org]] for the Contributor License Agreement.

USER_MANUAL.org

@@ -1,60 +0,0 @@
-#+TITLE: OpenCortex User Manual
-#+AUTHOR: Agent
-#+STARTUP: content
-#+FILETAGS: :docs:manual:
-
-* Introduction
-Welcome to the OpenCortex User Manual. This guide provides the operational knowledge required to manage your sovereign Lisp Machine and its neural skills.
-
-* System Architecture
-OpenCortex follows a "Purified Kernel" model. The core harness handles essential I/O, while all high-level logic resides in sovereign skills.
-
-** XDG Directory Standard
-To ensure POSIX compliance, OpenCortex stores its files in standard Linux locations:
-
-| Type | Path | Purpose |
-| :--- | :--- | :--- |
-| **Config** | `~/.config/opencortex/` | User settings, `.env` secrets, and provider registry. |
-| **Data** | `~/.local/share/opencortex/` | Tangled Lisp artifacts and the compiled engine. |
-| **State** | `~/.local/state/opencortex/` | Brain snapshots, logs, and Merkle-memory. |
-| **Bin** | `~/.local/bin/opencortex` | The global CLI shim. |
-
-* Command Reference
-
-** `opencortex setup`
-The interactive configuration wizard. Use this to:
-- Define your identity and the Agent's name.
-- Register LLM providers (Ollama, Groq, Anthropic, etc.).
-- The wizard automatically splits sensitive tokens into `~/.config/opencortex/.env`.
-
-** `opencortex link <platform> <token>`
-Connects OpenCortex to external communication gateways.
-- **Example:** `opencortex link telegram <my_bot_token>`
-- Performs real-time API verification before saving.
-
-** `opencortex doctor`
-Your primary diagnostic tool. Run this if the system feels sluggish or fails to boot. It verifies:
-- External dependencies (sbcl, git, socat).
-- XDG directory existence and permissions.
-- LLM connectivity.
-
-** `opencortex tui`
-Launches the native Lisp Terminal User Interface.
-- **Highlighting:** Semantic color-coding for Lisp and Org syntax.
-- **Scrolling:** Use `PgUp`/`PgDn` to navigate history.
-- **Exit:** Type `/exit` or `Ctrl+C` to close.
-
-* Configuration Strategy
-OpenCortex uses a **Hybrid Storage** model for maximum security and flexibility.
-
-** 1. Secrets (`.env`)
-Found in `~/.config/opencortex/.env`. This file stores raw API tokens. It is never automatically read by the Lisp structural parser to prevent accidental leakage into logs.
-
-** 2. Metadata (`providers.lisp`)
-Found in `~/.config/opencortex/providers.lisp`. This stores non-sensitive configuration like model names, base URLs, and user preferences as native Lisp S-expressions.
-
-* Troubleshooting
-If `opencortex doctor` reports a `FAIL`:
-1. Check that your `PATH` includes `/usr/bin` and `/usr/local/bin`.
-2. Ensure `sbcl` is installed.
-3. If LLM connectivity fails, verify your API key in `~/.config/opencortex/.env`.

docs/ARCHITECTURE.org

@@ -0,0 +1,90 @@
+#+TITLE: Passepartout Architecture
+#+AUTHOR: Agent
+#+STARTUP: content
+
+* The Four Quadrants
+
+Passepartout divides cognition along two axes: **Foreground vs Background** (initiated by the user vs running autonomously) and **Probabilistic vs Deterministic** (LLM-driven vs pure Lisp logic).
+
+|                | Probabilistic (LLM) | Deterministic (Lisp) |
+|----------------|--------------------|---------------------|
+| **Foreground** | Chat responses, task execution, code generation | Shell execution, file I/O, safety gates, dispatcher checks |
+| **Background** | Scribe distillation, vector embedding, autonomous decisions | Heartbeat, cron jobs, memory auto-save, gateway polling |
+
+The Probabilistic engine proposes. The Deterministic engine verifies and executes. No proposal from the LLM touches a file, runs a command, or sends a message without passing through at least one deterministic gate.
+
+* Code Map
+
+The project is organized into ~org/~ (source of truth) and ~lisp/~ (generated by tangle).
+
+** Core pipeline (loaded by ASDF, committed to git)
+
+| File | Purpose |
+|------|---------|
+| ~org/core-defpackage.org~ | Package definition and export list |
+| ~org/core-skills.org~ | Skill engine: ~defskill~ macro, topological sorter, jailed loading |
+| ~org/core-communication.org~ | Framed TCP protocol, actuator registry, daemon server |
+| ~org/core-memory.org~ | ~memory-object~ struct, Merkle hashing, snapshots, persistence |
+| ~org/core-context.org~ | Foveal-peripheral rendering, context assembly for LLM |
+| ~org/core-loop-perceive.org~ | Stage 1: normalize raw signals into pipeline format |
+| ~org/core-loop-reason.org~ | Stage 2: LLM proposal + deterministic verification |
+| ~org/core-loop-act.org~ | Stage 3: dispatch approved actions to actuators |
+| ~org/core-loop.org~ | Orchestration: process-signal, heartbeat, main entry point |
+| ~org/system-diagnostics.org~ | Boot-time health check, doctor CLI |
+
+** Skills (loaded at runtime by the skill engine)
+
+| Category | Files | Purpose |
+|----------|-------|---------|
+| **gateway-** | ~gateway-cli~, ~gateway-llm~, ~gateway-manager~, ~gateway-provider~, ~gateway-tui~ | External communication channels |
+| **security-** | ~security-dispatcher~, ~security-policy~, ~security-permissions~, ~security-vault~, ~security-validator~ | Safety and authorization |
+| **programming-** | ~programming-lisp~, ~programming-org~, ~programming-standards~, ~programming-literate~, ~programming-repl~ | Lisp and Org tooling |
+| **system-** | ~system-config~, ~system-archivist~, ~system-self-improve~, ~system-memory~, ~system-actuator-shell~, ~system-event-orchestrator~ | Background services |
+
+* Pipeline Flow
+
+Every signal moves through three stages:
+
+```
+Signal → Perceive (normalize) → Reason (think + verify) → Act (dispatch)
+```
+
+The signal is a plist: ~(:TYPE :EVENT :META (...) :PAYLOAD (:SENSOR :user-input :TEXT "..."))~
+
+1. **Perceive** normalizes raw input from any gateway into a uniform signal
+2. **Reason** calls the LLM to generate a proposal, then runs the proposal through all registered deterministic gates (sorted by priority). If a gate rejects the proposal, the rejection trace feeds back to the LLM for self-correction (up to 3 retries)
+3. **Act** dispatches the approved action to the registered actuator (~:cli~, ~:tool~, ~:system~, ~:shell~, ~:telegram~, ~:signal~)
+
+Each stage can produce feedback signals that loop back to Perceive (e.g., a tool-execute action produces a ~:tool-output~ event that becomes the next perception).
+
+** Depth limiting
+
+A depth counter prevents infinite loops. If a signal's depth exceeds 10, it is silently dropped. This is the circuit breaker for runaway recursive cycles.
+
+* Skill Lifecycle
+
+1. **Discovery:** ~skill-initialize-all~ scans the skills directory, globs for ~*.lisp~ files (excluding ~core-*~ files which are loaded by ASDF)
+2. **Sorting:** ~skill-topological-sort~ orders skills by their ~#+DEPENDS_ON:~ declarations
+3. **Loading:** Each skill is loaded into a jailed package (~passepartout.skills.<skill-name>~). The loader removes ~in-package~ forms, evaluates the remaining code in the jailed package, and exports symbols matching the skill's short name to ~passepartout~
+4. **Registration:** The skill's ~defskill~ call creates a ~skill~ struct in ~*skill-registry*~, registering its trigger function, probabilistic prompt generator, deterministic gate, and system-prompt augment
+5. **Triggering:** On each cognitive cycle, ~skill-triggered-find~ iterates the registry and returns the highest-priority skill whose trigger matches the context
+6. **Hot-reload:** A skill can be replaced at runtime by loading a new version into its jailed package — no restart needed
+
+* Protocol Format
+
+All communication between the daemon and its gateways (TUI, CLI, Emacs) uses length-prefixed plists over TCP:
+
+```
+00002C(:TYPE :EVENT :PAYLOAD (:ACTION :handshake :VERSION "0.2.0"))
+```
+
+The 6-character hex prefix encodes the payload length. The payload is a ~prin1~-serialized plist. ~*read-eval*~ is bound to nil on the receiving end to prevent code injection.
+
+** Standard message envelope:
+
+| Key | Value | Meaning |
+|-----|-------|---------|
+| ~:TYPE~ | ~:REQUEST~, ~:EVENT~, ~:RESPONSE~, ~:LOG~, ~:STATUS~ | Message category |
+| ~:META~ | plist | ~:SOURCE~, ~:SESSION-ID~, ~:reply-stream~ |
+| ~:PAYLOAD~ | plist | Action-specific data (~:SENSOR~, ~:ACTION~, ~:TEXT~) |
+| ~:DEPTH~ | integer | Recursion counter for loop prevention |

docs/CHANGELOG.org

@@ -1,8 +1,53 @@
 #+TITLE: Changelog
 #+STARTUP: content
 
+* v0.2.1 — Rename, Safety, and Deployment (2026-05-02)
+This release renames the project to Passepartout, adds content-level safety gates, professionalizes deployment, and documents every function with full explanatory prose.
+
+** Project Rename
+- **Passepartout:** Project renamed from OpenCortex to Passepartout. All files, packages, functions, and environment variables updated.
+- **Org/lisp split:** Source of truth lives in ~org/~, tangled to ~lisp/~. Core files committed, skills generated at configure time.
+- **31 org files:** Every file renamed to ~category-subject.org~ convention. Harness and skills unified under one directory.
+
+** Safety
+- **Secret Exposure Gate:** Content scanning for API keys, PEM blocks, PGP keys, credentials, and tokens in all outgoing text.
+- **Path Protection:** File reads blocked for ~.env~, SSH keys, PEM/PGP, cloud configs, and credential stores.
+- **Shell Safety:** Destructive commands (~rm -rf /~, ~dd~, ~mkfs~, ~shred~) and injection patterns (backtick, ~$()~) blocked with timeout and output limits.
+- **Lisp Validation Gate:** Writes to ~.lisp~ and ~.org~ files validated for syntax errors before they reach disk.
+- **REPL Verification Lint:** Warns if defuns are written without REPL prototyping.
+
+** Deployment
+- **Multi-distro:** Automatic detection of Debian vs Fedora, correct package names and managers.
+- **systemd service:** User-level auto-start on boot via ~passepartout install service~.
+- **Backup/Restore:** ~passepartout backup~ and ~passepartout restore~ commands.
+- **Docker:** Updated to ~debian:trixie-slim~, fixed build context.
+- **CI/CD:** GitHub Actions workflows for lint, test, and release. Gitea deploy workflow fixed.
+
+** Engineering Process
+- **REPL-first Lifecycle:** Two-track workflow: Org-first for prose and tests, REPL-first for implementation. Every function prototyped in the REPL before reaching Org.
+- **Verification Loop:** Bouncer rejects bad lisp; rejection trace feeds back to LLM for self-correction.
+- **System-prompt-augment:** Skills can inject domain-specific mandates into the LLM prompt via ~:system-prompt-augment~.
+
+** Documentation
+- **Literate Prose Restored:** Every Org file now has an Architectural Intent overview and explanatory prose before each function block, following the style established in the v0.1.0 era.
+- **AGENTS.md:** Thinned to a routing layer — the skill org files are authoritative.
+
+** Contributors
+- **gitignore:** ~skills/*.lisp~ and ~tests/*.lisp~ as generated artifacts (source of truth is ~.org~).
+- **DeepSeek and NVIDIA NIM:** Added as LLM providers (OpenAI-compatible). Use ~DEEPSEEK_API_KEY~ and ~NVIDIA_API_KEY~ env vars.
+
+* v0.2.0 - Interactive Refinement (2026-04-29)
+This release focuses on professionalizing the environment and enhancing the agent's structural capabilities.
+
+** Features
+- **Enhanced Lisp/Org Utilities:** Structural editing, REPL evaluation, and automated formatting to ensure code integrity.
+- **Namespace Standardization:** Refactored utilities into =utils-org= and =utils-lisp= for predictable discovery.
+- **Autonomous Mandates:** Implemented =GEMINI.md= for local agentic enforcement of engineering standards.
+- **Onboarding Wizard:** Modular Lisp setup for multiple LLM providers.
+- **Professional TUI:** Styled, scrollable interface with improved diagnostics.
+
 * v0.1.0 - The Autonomous Foundation (2026-04-20)
-This is the initial MVP release of the ~opencortex~. It establishes a secure, auditable Lisp kernel for a personal operating system.
+This is the initial MVP release of the ~passepartout~. It establishes a secure, auditable Lisp kernel for a personal operating system.
 
 ** Features
 - **Unified Envelope Architecture:** Actuator-agnostic protocol that decouples routing metadata from cognitive payloads, ensuring all clients (TUI, Emacs, CLI, Matrix) are treated as equal citizens.
@@ -12,12 +57,12 @@ This is the initial MVP release of the ~opencortex~. It establishes a secure, au
 - **The Bouncer:** Last-mile deterministic security gate with Deep Packet Inspection for secrets and network exfiltration.
 - **Autonomous Scribe:** Background distillation worker that turns daily journal entries into evergreen Zettelkasten notes. Verified to distill atomic concepts autonomously.
 - **Autonomous Gardener:** Heartbeat-driven worker that repairs broken links and identifies orphaned nodes in the Memex graph.
-- **Unified Onboarding:** Single-command installation (~opencortex.sh~) with Docker support, OS detection, and automated dependency resolution.
+- **Unified Onboarding:** Single-command installation (~passepartout.sh~) with Docker support, OS detection, and automated dependency resolution.
 - **Channel-Aware TUI:** Interactive Croatoan-based terminal client with clean, human-readable formatting for tool results and system logs.
 - **CLI Gateway:** Local TCP socket server for pipe-friendly interaction and frictionless first contact.
 
 ** Licensing & Community
-- **AGPLv3 License:** OpenCortex is now officially licensed under the GNU Affero General Public License v3.0.
+- **AGPLv3 License:** Passepartout is now officially licensed under the GNU Affero General Public License v3.0.
 - **Contributor License Agreement:** Implemented a broad CLA (~CLA.org~) for long-term project sustainability.
 
 ** Architectural Shift

docs/CONTRIBUTING.org

@@ -1,10 +1,10 @@
-#+TITLE: Contributing to OpenCortex
-#+AUTHOR: OpenCortex Contributors
+#+TITLE: Contributing to Passepartout
+#+AUTHOR: Passepartout Contributors
 #+STARTUP: content
 #+FILETAGS: :docs:contributing:
 
 * Philosophy
-OpenCortex is built on a "Zero-Bloat" mandate. The core kernel is mathematically pure, pushing all peripheral logic, API integrations, and routing to hot-reloadable "Skills".
+Passepartout is built on a "Zero-Bloat" mandate. The core kernel is mathematically pure, pushing all peripheral logic, API integrations, and routing to hot-reloadable "Skills".
 
 * Literate Granularity
 We strictly adhere to Literate Programming using Org-mode.
@@ -14,7 +14,7 @@ We strictly adhere to Literate Programming using Org-mode.
 - Every architectural decision, constraint, and implementation detail must be documented alongside the code in the `.org` file.
 
 * Skill Creation Standard
-Skills are the building blocks of OpenCortex. They reside in the `skills/` directory.
+Skills are the building blocks of Passepartout. They reside in the `skills/` directory.
 
 A skill must define:
 1. *Trigger*: A lambda determining if the skill should activate based on the context.
@@ -40,5 +40,5 @@ All inter-process communication occurs via the Unified Envelope. Do not use lega
 1. Ensure your working tree is clean.
 2. Write tests for your skill in `tests/`.
 3. Tangle all files.
-4. Run the test suite: `sbcl --eval "(asdf:test-system :opencortex)"`.
+4. Run the test suite: `sbcl --eval "(asdf:test-system :passepartout)"`.
 5. Submit a PR outlining the architectural intent and the specific Literate changes.

docs/DESIGN_DECISIONS.org

@@ -0,0 +1,460 @@
+# Passepartout Design Decisions
+
+This document captures the rationale behind key architectural choices. It is not a specification - it is a thinking medium for future architects and contributors who need to understand why the system is built this way, not just how.
+
+* Multi-Agent by Default is a Smell
+:PROPERTIES:
+:ID:       design-multi-agent-default
+:END:
+
+The AI industry has developed an intuition toward multi-agent systems as the default solution to hard problems. Multiple agents spawn, delegate, coordinate, debate, and consensus their way toward solutions. This pattern is compelling in demos and genuinely useful in specific contexts - but it has become a default assumption that warrants scrutiny.
+
+When context windows grew expensive and task complexity increased, the response was natural: split the problem across agents, each handling a slice. But this architectural choice carries hidden costs that are rarely acknowledged in the enthusiasm of implementation.
+
+**The synchronization tax** is the most immediate burden. Each agent operates with partial information, and maintaining coherence requires continuous state reconciliation. Tokens and processing cycles are spent not on the task itself, but on protocol overhead - who holds what, who decided what, who is correct when they disagree.
+
+**Fragmented context** is the deeper problem. When Agent A writes a function and Agent B modifies a type it depends on, neither has the full picture. Integration failures emerge not from individual incompetence but from systemic communication gaps. Single-agent systems avoid this entirely: one brain holds the complete model, every decision is made with full visibility.
+
+**Audit trails become complex** in multi-agent systems. A decision traced through a single-agent system has a clean, linear history. A decision traced through a multi-agent system branches and forks, with each agent's reasoning partially overlapping and partially conflicting.
+
+None of this is to say multi-agent systems are never appropriate. Embarrassingly parallel workloads - scanning ten thousand files, processing batch jobs - benefit from parallelism regardless of context. When distinct expertises are required and cannot coexist in one model, delegation makes sense. In adversarial scenarios where conflicting goals are features, multi-agent architectures shine.
+
+But the default assumption that complex reasoning tasks are best solved by multiple agents is unproven and likely wrong for the engineering domain. Claude Code is a single-agent system. It handles 50-file refactors, debugs complex stack traces, writes tests, and navigates large codebases. The assumption that you need five agents to do what one well-designed agent can do is an industry habit, not a technical necessity.
+
+Passepartout is single-agent by default not from limitation but from conviction: for reasoning-heavy work where coherence matters, a unified memory space and single decision-making locus are architectural assets, not constraints.
+
+* The Unified Memory Argument
+:PROPERTIES:
+:ID:       design-unified-memory
+:END:
+
+If single-agent architecture is the decision, unified memory becomes the mechanism that makes it viable. The critical question is not "how many agents" but "how does the agent manage context without saturating."
+
+Context window limits are largely a symptom of lazy architecture. The default approach - stuff everything in, hope the model figures it out - works poorly at scale. A more principled approach inverts the problem: the system should hold effectively infinite context, with the active window kept lean through intelligent management.
+
+**Lazy loading** is the core technique. When an agent needs information about a function, it does not load the entire codebase. It loads precisely what the function does. Context stays lean - 2,000 to 4,000 tokens - while the full context remains accessible through retrieval.
+
+**Compaction events** are scheduled during idle cycles. The system extracts new facts from active context and writes them to permanent storage. Active context is wiped clean, not because space ran out, but because the information has been preserved in a form that can be retrieved when relevant.
+
+**Org-mode as externalized memory** solves the persistence problem elegantly. Every decision, every note, every task lives in plain text files the user already owns. The agent does not maintain a separate database. It queries files it can already access, modifies files it already owns.
+
+**Retrieval is the key primitive.** Semantic search across Org files finds relevant nodes. The agent does not hold the full context - it holds pointers to context, loaded on demand. This is how a single agent handles tasks that would saturate a naive multi-megabyte context window.
+
+The unified memory argument is not that infinite context is free. It is that with proper architecture, effective infinite context is achievable without the synchronization and fragmentation costs of multi-agent systems.
+
+* The Probabilistic-Deterministic Split
+:PROPERTIES:
+:ID:       design-probabilistic-deterministic
+:END:
+
+The architecture divides cognition into two fundamentally different reasoning systems. This is not arbitrary engineering but a structural response to a fundamental truth: probabilistic systems will hallucinate, and you cannot build reliable autonomy on an unreliable foundation.
+
+An LLM is a statistical engine. It generates outputs based on patterns in training data. It is remarkable at translation, generation, pattern matching, and fuzzy reasoning. It can take messy human intent and produce structured queries. It can take structured results and produce natural language. It is, in the terminology of the system, the creative brain.
+
+But it cannot be trusted. Not because it is poorly designed or insufficiently trained, but because hallucination is a fundamental property of probabilistic inference. The model generates the most likely continuation, not the correct one. Given sufficient context, the most likely continuation is correct. Given novel context, it is often wrong in confident-sounding ways.
+
+The deterministic engine addresses this by being what the probabilistic engine is not: mathematically rigorous, formally verifiable, and incapable of hallucination by design. It operates on explicit symbolic representations - lists, property lists, knowledge graphs - not on floating-point activations. When it evaluates a path confinement check, it returns true or false, not a probability distribution.
+
+The division of labor is architectural. The LLM handles the fuzzy interface between human language and structured representation. It translates what the user wants into what the system can reason about. The deterministic engine receives those structured representations and evaluates them against formal invariants. It decides whether to execute, not whether the translation was semantically plausible.
+
+This separation is the source of Passepartout's safety guarantee. Other agents add "guardrails" as an afterthought - a layer of filtering around a dangerous core. Passepartout makes the division explicit: the LLM never touches the file system, never executes a command, never modifies memory. It generates proposals. The deterministic engine evaluates and executes. The dangerous operations are never in the probabilistic path.
+
+The split also explains why the system gets safer over time without the LLM improving. The deterministic engine accumulates rules. The LLM proposes actions, the engine evaluates them against a growing rule set. Early versions block obvious dangers. Later versions block sophisticated attacks that were previously unknown. The safety grows logarithmically with the number of interactions, not linearly with model capability.
+
+* Homoiconicity as Foundation
+:PROPERTIES:
+:ID:       design-homoiconicity
+:END:
+
+Common Lisp is homoiconic: code and data share the same representation. A Lisp program is a list, and a list is a Lisp program. This is usually presented as a curiosity, an interesting property that enables macros. In Passepartout, it is the foundational enabling property of the entire self-modification architecture.
+
+When code is data, the agent can read its own source the same way it reads a text file or an Org buffer. There is no AST parser required, no external tool to extract the function object from the running image. The agent evaluates (read-from-string source) and the result is executable Lisp. The representation it manipulates is the same representation that the runtime executes.
+
+This is not true of most languages. In Python, the agent can inspect an AST through the ast module, but that AST is a foreign object - a data structure that represents code but is not code itself. The agent can see that a function takes certain arguments and returns a certain type, but it cannot treat the AST as a live object it can modify and re-evaluate. In C, the agent cannot inspect its own compiled machine code at all.
+
+In Lisp, the distinction between code and data is a convention, not a barrier. The agent's skills are lists. The agent can take a skill, extract a function definition, modify the body, wrap it in a new list, and evaluate it. The modification is surgical: it changes exactly what it intends to change, with no risk of corrupting adjacent state, because the representation is a tree that the runtime understands natively.
+
+Runtime introspection is therefore native. The agent does not need a debugger API or a reflection protocol. It operates on its own code as data because its own code is data. (describe 'function-name) returns the function's documentation. (function-lambda-list 'function-name) returns its parameters. (macroexpand-1 '(defskill ...)) shows what the macro produces. There is no impedance mismatch between the agent's reasoning and the system's representation.
+
+Self-modification is the practical consequence. The agent can detect an error, locate the erroneous function, generate a corrected version, and hot-reload it into the running image. The correction is not applied to a file that requires a restart - it is applied to the live object that the system is currently executing. This is what makes the self-editing skill viable: the agent can fix itself without stopping.
+
+In v3.0.0, when the symbolic engine takes over the reasoning core, homoiconicity becomes the bridge between the neural and symbolic layers. The neural engine generates proposals as s-expressions. The symbolic engine evaluates them against formal constraints. The result is a modification that is simultaneously a data structure the symbolic engine can analyze and code the runtime can execute. The two representations are identical by construction.
+
+This is the technical meaning of "Lisp as Governor": not just that Lisp orchestrates the other components, but that the representation of the system is uniform and inspectable at every level. There is no hidden state, no opaque machine code, no representation that the agent cannot reach into and modify. The system is legible to itself by design.
+
+**Self-Modification Without Boundaries**
+
+Other systems that support self-editing draw a line between the core and the skills. Hermes can modify its skills at runtime, but the core harness is protected - editing it requires a restart because the core is treated as privileged code that cannot be safely modified while running.
+
+Passepartout has no such boundary. The "thin harness, fat skills" distinction describes where complexity lives, not where authority flows. The harness is small by design, but it is not privileged. The agent can read and write any part of the system - including the very code that is currently executing - without restarting.
+
+This is only possible because Lisp code is mutable data at runtime. In a compiled language, the machine code for a running function is locked in memory, protected by the call stack, impossible to modify safely. In Lisp, the function object is a list you can modify with =setf=. When the agent changes a harness function, the running image immediately reflects the change. The next invocation uses the new code. There is no restart, no special boot mode, no distinction between development and production.
+
+The implications extend beyond convenience. A system that cannot modify its own core is a system that has limits on its own adaptability. It can learn skills but not improve its own structure. It can grow but not evolve. Passepartout's lack of a core boundary means the system can improve its own reasoning engine, fix bugs in its own cognition, and evolve its own architecture - all while continuing to operate.
+
+This is the final expression of homoiconicity: not just that code is readable as data, or that skills are modifiable, but that the entire system - including the parts that other systems protect - is open to modification. There is no ceiling on self-improvement. The agent can rewrite the very code that rewrites itself.
+
+**Lisp and the AI Dream**
+
+Lisp was invented in 1958 by John McCarthy with artificial intelligence explicitly in mind. Its design - code as data, runtime mutation, symbols and lists as first-class constructs - was shaped by the belief that a truly intelligent machine would need to reason about and modify its own reasoning. For decades, Lisp machines were the closest thing to thinking machines that existed.
+
+Then the AI winter came. Symbolic AI fell out of favor. Statistical learning and neural networks dominated. Lisp was relegated to niche applications and academic curiosity. The machine that was designed for AI was never used for the task it was designed for.
+
+Six decades later, neural networks have arrived at the problem from a different direction. They can learn and generalize, but they hallucinate, cannot explain their reasoning, and cannot safely modify themselves. The neuro-symbolic synthesis - combining neural pattern recognition with symbolic reasoning - is recognized as the path toward AI that is both powerful and trustworthy.
+
+Lisp's time may finally have come. Not as a replacement for neural networks, but as the governor that makes them safe - the symbolic engine that verifies what the neural engine proposes, the homoiconic substrate that allows the system to inspect, modify, and improve its own reasoning. The machine that was designed for AI in 1958 may be the exact machine needed for AI in 2026 and beyond.
+
+* Org-Mode as Unified AST
+:PROPERTIES:
+:ID:       design-org-unified-ast
+:END:
+
+Passepartout makes a bet that most systems consider too expensive to place: that humans and machines should share the same file format. That bet is Org-mode.
+
+Most systems separate human-readable notes from machine-readable data. The user writes Markdown. The system stores it, indexes it, searches it. But internally, the system maintains its own model - a database, an object store, a knowledge graph - that is disconnected from the Markdown. When the user dies or leaves, the Markdown survives but the model must be reconstructed.
+
+Passepartout refuses this separation. The Org file is not a representation of the data. The Org file IS the data. The same text that the user reads and edits is what the system parses and operates on. org-element reads an Org buffer and returns a tree structure that is the direct Lisp representation of the file's content.
+
+This has several profound implications.
+
+First, there is no translation layer between human and machine. When the agent writes a skill, it writes Org text that is immediately readable by the human who owns the file. When the human writes a note, it is immediately accessible to the agent as a native data structure. The communication is not mediated by a schema or an import/export process.
+
+Second, the format is genuinely readable by both parties, not just technically accessible. Org-mode's syntax is human-friendly: headlines begin with asterisks, properties live in drawers, tags are labels after colons. The human does not have to understand the full Org specification to read what the agent wrote. The agent does not have to handle edge cases in human notation.
+
+Third, the format is stable across decades. Org-mode has been in active development since 2003. The files written today will be readable by Org-mode in 2040. There is no schema migration, no database upgrade, no vendor lock-in. The human's notes survive the system.
+
+Fourth, the format is universally available. Org-mode is free software. The files are plain text. There is no proprietary format to decode, no application to purchase, no cloud service to access.
+
+Fifth, the format is header-aware and sparse-tree capable. Org-mode's headline hierarchy is not just formatting - it is a semantic structure the system can query. The agent can retrieve only the relevant subtree under a heading, ignoring the rest of the file. This is fundamentally different from Markdown, where the entire file must be loaded or the retrieval logic must parse and filter at the string level.
+
+Sparse tree retrieval is the key to efficient context management. When the agent needs information about the =openctl-db= function, it queries for the =openctl-db= subtree specifically. It receives exactly the code, documentation, and metadata under that heading - nothing more. The context stays lean not because the file was pre-split but because the retrieval is structural. In a Markdown system, the agent either loads the entire file (expensive, noisy) or relies on imprecise grep-like search (fragile, loses hierarchy). In Org-mode, retrieval is precise, hierarchical, and cheap. The heading boundary is the access boundary.
+
+Sixth, Org-mode unifies what every other format fragments. A single Org file contains the headline hierarchy, prose documentation, source code blocks with live evaluation, tags for categorization, metadata in property drawers, TODO state for task management, timestamps and deadlines, and links to other nodes. Markdown cannot express TODO state without external tools. JSON cannot contain prose. YAML cannot embed runnable code. Each format serves one purpose; Org-mode serves all of them. When the agent reads a skill file, it reads documentation, code, dependencies, metadata, and task state in one parseable structure. When the human reads the same file, they see the same information rendered in a human-friendly form. No other format achieves this unification without maintaining parallel files or external databases.
+
+Seventh, a skill lives in one Org file, not a directory. The standard pattern for a software project is a directory containing =README.md=, =package.json=, =src/main.py=, =src/utils.py=, =tests/test_main.py=, =scripts/deploy.sh=, and =config.yaml=. Each file type is isolated by convention: prose lives in README, code lives in src, tests in tests, configuration in config. This fragmentation means the skill is not a single object the system can reason about - it is a collection of files the system must assemble. Passepartout's skills violate this convention deliberately. Each skill is one Org file. The file contains the skill's documentation, the skill's code, the skill's metadata, the skill's TODO state, and the skill's dependencies on other skills. There is no directory to navigate, no external files to locate, no risk that the README describes behavior that the code does not implement. The skill is a single atomic unit: readable by human and machine, editable by both, versionable as one entity.
+
+The unified format is what makes the memory architecture work. The agent's memory is not a database that the user cannot inspect. It is a folder of Org files that the user can read, edit, and understand. The agent manipulates these files directly, using the same tools the user would use. There is no hidden state, no shadow database, no model that differs from the source.
+
+This is what "sovereignty" means in technical terms: the user owns the data in a format they can access, and the agent operates on the data in the same format they own.
+
+* Literate Programming as Discipline
+:PROPERTIES:
+:ID:       design-literate-programming
+:END:
+
+The decision to use Org-mode as the source of truth for code, not just documentation, is not a ceremonial preference. It is a constraint mechanism that enforces better engineering habits at the cost of convenience.
+
+The traditional development workflow is: write code, write comments, commit. The literate programming workflow is: write prose, write code, commit the Org. The order matters. The prose must come first not because of style guidelines but because the act of explaining what a function does before writing it forces clarity of thought that editing code directly does not.
+
+When you must write a paragraph describing what a function does before you write the function, you discover the cases you have not considered. You find the edge conditions that are ambiguous. You realize that the function's name does not match its behavior, or that its behavior does not match your intent. The friction is not a bug - it is the mechanism by which thinking is enforced.
+
+The one-function-per-block rule enforces granularity. A function that cannot be explained in a paragraph is a function that is doing too much. The block boundary is not aesthetic - it is architectural. It prevents the drift toward monolithic functions that accumulate responsibilities over time and become untestable, unmaintainable, and incomprehensible.
+
+The tangle step enforces source-of-truth discipline. The .lisp file is generated from the Org file. This means the Org file cannot drift from the implementation. If the implementation changes, the Org must be updated to match. If the Org describes behavior that the implementation does not perform, the tangle produces code that does not match the Org description. Either way, inconsistency is visible and recoverable.
+
+The evaluation gate enforces correctness. Every block can be evaluated independently in a running Lisp image. This means syntax errors are caught at authorship time, not at integration time. The function that compiles in isolation but fails in context is the function whose context dependencies were never made explicit. The evaluation gate forces those dependencies to surface.
+
+Together, these constraints create a development experience that is slower in the small and faster in the large. Writing a new function takes longer because you must explain it. But debugging, maintaining, and extending the codebase is faster because every function has a human-readable explanation of its intent, every function is testable in isolation, and every function's source is always synchronized with its documentation.
+
+The literate programming discipline is not about producing documentation. It is about producing code whose correctness has been verified by the act of explaining it.
+
+* The Bouncer as Learning System
+:PROPERTIES:
+:ID:       design-bouncer-learning
+:END:
+
+The Bouncer begins as a static guard - a set of rules that block obviously dangerous actions. But defining "obviously" is the hard problem. The agent encounters situations the rules do not anticipate. The Bouncer must grow.
+
+The human-in-the-loop exception is the seed. When the LLM proposes an action the Bouncer does not recognize, the system does not default to blocking or allowing. It suspends. It writes the proposed action to an Org buffer in a format the human can read and understand. The human reviews and approves or denies. The Bouncer observes the decision.
+
+From this single observation, the Bouncer extracts a rule. Not merely "allow this specific action" but "allow this class of actions parameterized by these dimensions." The human approved a write to ~/projects/myapp/src/core.clj. The Bouncer generalizes: writes to ~/projects/*/src/*.lisp are approved for this session, or for this project, or indefinitely depending on the context and the user's pattern of decisions.
+
+Shadow mode is where rules are tested before deployment. When the Bouncer encounters a novel situation and is uncertain, it can run the proposed action in a simulated environment. It observes the side effects - what files would be modified, what processes would be spawned, what network calls would be made. If the simulation produces dangerous side effects, the rule is discarded. If it appears safe, the rule is added to the active set with a confidence rating.
+
+Formal verification is where the learned rules are checked against invariants. The Bouncer's rules are not merely patterns observed from human behavior. They are formulas in a logic that the system can reason about. A rule that would enable path traversal is not discarded because it was observed to be safe in prior instances - it is discarded because it violates the path-confinement invariant by construction.
+
+The Bouncer becomes, over time, not a guard that blocks bad actions but a reasoning system that understands why actions are good or bad. Early versions learn from human decisions. Later versions learn from their own logical analysis. The human's role transitions from approver to auditor to, eventually, unnecessary oversight.
+
+This is the bootstrap. The system begins dependent on human judgment because it has no basis for judgment of its own. Through accumulated decisions, it constructs a model of what is permitted and why. That model is the foundation for the deterministic symbolic engine that in v3.0.0 takes over the reasoning that the Bouncer learned to perform.
+
+* Passepartout as a Function in Time
+:PROPERTIES:
+:ID:       design-trajectory
+:END:
+
+The system is not static. Passepartout is defined not just by its current state but by its trajectory - how its cognitive architecture evolves over versions, with each phase reducing probabilistic surface area while increasing deterministic control.
+
+**v0.1.0: The Probabilistic Foundation**
+
+The agent begins by relying heavily on the neural engine. The LLM translates messy human intent into structured queries, generates code, proposes solutions. The Bouncer is present but thin - it blocks obviously dangerous actions, verifies path confinement, enforces basic invariants. Most reasoning is probabilistic because the symbolic infrastructure does not yet exist to do otherwise.
+
+At this stage, Passepartout is similar to other LLM-based agents. The key difference is the gate is already there - the architecture assumes the LLM will hallucinate and structures safety accordingly.
+
+**v0.2.0 through v0.5.0: The Bouncer Learns**
+
+Each version expands the deterministic layer. The Bouncer writes rules from approved exceptions. Shadow mode runs trial executions. Tool permission tiers mature from simple allow/deny to nuanced context-aware policies. The agent becomes less likely to attempt dangerous actions not because it is smarter but because the guard has more complete information.
+
+This is the bootstrapping phase. The system learns by watching itself and its user. Every blocked action becomes a rule. Every approved exception becomes a pattern. The symbolic layer grows at the probabilistic layer's expense.
+
+**v0.6.0 through v0.7.0: The Architecture Crystallizes**
+
+Skills become more deterministic. The agent learns to write its own skills - first drafts generated by the LLM, but verified and refined by the symbolic engine. Self-editing improves. The REPL becomes a first-class cognitive substrate - code is not just written but verified, iterated, tested before committing.
+
+The balance shifts. The neural engine still translates and generates, but the symbolic engine checks, constrains, and corrects. The system is becoming what Gemini called "the strict guard" - a mathematically rigorous layer intercepting probabilistic output.
+
+**v1.0.0: SOTA Parity - The Probabilistic Ceiling**
+
+Achieving feature parity with commercial agents requires the full v0.x series complete. At this point, Passepartout is a reliable autonomous agent - it can handle multi-step engineering tasks, maintain context across sessions, recover from errors, pass benchmarks. It is safer than alternatives because the Bouncer is mature and the memory architecture is sound.
+
+But it is still fundamentally probabilistic at its core. The symbolic engine verifies and constrains, but the generative engine is still the primary reasoning source.
+
+**v2.0.0: The Agent Becomes the Interface**
+
+This version is not about the symbolic engine - it is about tools. The agent stops running inside Emacs and starts replacing it. Lish (Lisp shell) emerges: a shell that speaks plists, not POSIX. Org-mode buffers become the file system. Org-babel becomes the REPL. The agent is no longer a passenger in Emacs - it is the operating system.
+
+The key insight is that the agent's interface and the agent's brain become the same thing. In earlier versions, there is a clear separation: the agent produces output, the TUI displays it. In v2.0.0, the distinction blurs. The agent's thoughts are displayed in Org buffers that are also the interface that the agent manipulates.
+
+This is the Emacs cannibalization phase. Not hostile replacement but evolution - Emacs was always a Lisp machine, and v2.0.0 completes the metamorphosis.
+
+**v3.0.0: The Symbolic Breakthrough**
+
+This is the architectural leap. The system transitions from "probabilistic engine with symbolic verification" to "symbolic engine with probabilistic input and output."
+
+The 10-80-10 architecture becomes fully realized: ten percent neural for input translation, eighty percent symbolic for reasoning against a knowledge graph, ten percent neural for output formatting. The symbolic engine maintains facts, relationships, rules, and formal proofs. When the neural engine generates something, the symbolic engine verifies it - not by checking against a blocklist, but by running the proposal through a Prolog/Datalog reasoner that understands the domain constraints.
+
+The deterministic planner takes the wheel. The LLM is no longer consulted for planning decisions - it translates human language to structured queries and structured results back to human language. The planning itself is pure Lisp: task graphs generated by a symbolic reasoner that has access to the full knowledge graph.
+
+Self-correcting gates replace the learned Bouncer rules. The system learns not just from approved exceptions but from the full history of outcomes - did the plan succeed? Where did it fail? The symbolic engine updates its own rules based on the results.
+
+The implications are significant. Hallucination becomes structurally impossible because the symbolic engine will not accept a fact that contradicts its knowledge graph. Safety becomes provable because the formal verification layer can prove properties about the system's behavior. Self-improvement becomes stable because the agent modifies skills that are then verified before execution.
+
+**v4.0.0 and Beyond: Hardware as the Final Constraint**
+
+The Lisp machine becomes physical. RISC-V with tagged architecture, hardware-enforced type checking, FPGA prototype for the symbolic core. The agent runs not in emulation but on silicon purpose-built for the architecture.
+
+This is the long horizon. The symbolic engine runs on logic ASICs optimized for symbolic computation. The neural engine runs on GPU or purpose-built matrix math hardware. Lisp orchestrates both, enforcing at the hardware level what it enforced at the software level in earlier versions.
+
+**The Trajectory as Design Principle**
+
+Understanding Passepartout as a function in time is not nostalgia. It is architectural guidance. Every decision in v0.x should be made with awareness of where the system is going. Code written today becomes the substrate for v3.0. Skills designed today become the vocabulary the symbolic engine speaks tomorrow.
+
+The probabilistic beginning is not a weakness to overcome. It is the bootstrap. The system learns the domain through probabilistic inference, and that learned knowledge becomes the seed for the symbolic engine. By the time the symbolic engine takes over, it has a rich knowledge graph to reason about, grown from thousands of probabilistic interactions.
+
+This is how you build a reasoning machine: start with a learner, make it learn to verify, let verification become the core, remove the learner once it has learned enough.
+
+* The REPL as Cognitive Substrate
+:PROPERTIES:
+:ID:       design-repl-cognition
+:END:
+
+A REPL - Read, Eval, Print, Loop - is an interactive programming environment that reads an expression, evaluates it, prints the result, and loops back to read the next expression. It is the opposite of batch processing: where batch compiles and runs a program in one shot, a REPL works one expression at a time, with each evaluation building on all previous ones. The programmer defines a function, calls it, inspects the result, modifies it, and calls it again. The state accumulates. The session is the program.
+
+In Lisp, the REPL is not a debugging tool bolted onto the language - it is the natural mode of interaction. The running image is the environment. When you evaluate =(+ 2 2)=, the result =4= is printed, and you remain in the same image where =+= is defined, where previous definitions persist, where the next expression can reference anything that came before. There is no separation between development and execution. The REPL is not a simulation of the program - it is the program running.
+
+Passepartout uses the REPL in this spirit, but elevated: it is not merely a tool for writing code, it is the mechanism by which the agent interacts with its own cognition - a loop that mirrors the perceive-reason-act metabolic cycle at the implementation level.
+
+In the agent's cognitive architecture, the REPL serves three functions that are difficult or impossible to achieve through batch processing or stateless API calls.
+
+First, the REPL enables verification before commitment. When the agent generates code, it does not write and forget - it evaluates in a running image, observes the result, iterates if incorrect. The feedback loop is tight: the time between writing and seeing the error is measured in milliseconds, not in the round-trip to a language server or a batch compiler. This is the "verification over hallucination" principle from the RLM paper made concrete: the agent tests what it writes before claiming it works.
+
+Second, the REPL enables stateful exploration. The agent can define a variable, inspect it, modify it, redefine it. The exploration accumulates state across interactions. This is not a debugging session - it is the agent thinking with its hands, working through a problem by trying variations and observing outcomes, keeping the successful ones and discarding the failures.
+
+Third, the REPL is a shared substrate. When the agent evaluates code, that code runs in the same image as the agent's own cognition. There is no process boundary between the agent and its tools. The REPL is not a subprocess the agent controls - it is a direct interface to the agent's own nervous system.
+
+This is why the REPL becomes more important as the system matures. In early versions, it is a development tool. In v0.6.0 and beyond, it becomes a cognitive tool: the agent explores hypotheses by evaluating them, verifies the output of sub-agents by inspecting live state, and tests modifications before committing them to the knowledge graph.
+
+* The Evaluation Harness
+:PROPERTIES:
+:ID:       design-evaluation-harness
+:END:
+
+SOTA parity is meaningless without measurement. A system that claims to match commercial agents must demonstrate it through reproducible benchmarks, not through feature checklists. The evaluation harness is the apparatus by which Passepartout proves its capabilities.
+
+The industry standard for coding agents is SWE-bench: a corpus of GitHub issues paired with pull requests. The agent is given an issue, must understand the codebase, write a fix, and submit. Success is measured by whether the submitted PR passes the existing test suite. This tests the full chain: understanding, planning, code generation, verification, and multi-step reasoning.
+
+Passepartout implements a native Lisp harness for this. A background thread clones repositories, feeds issues into the cognitive loop, tracks the resolution trajectory as an Org-mode headline tree, and scores success by test outcomes. The trajectory is persisted: when a resolution fails, the system can inspect where in the chain the reasoning broke down. The headline tree records the agent's thoughts at each step, making the failure auditable and the debugging human-assisted.
+
+Beyond SWE-bench, the harness includes chaos testing. The system is subjected to resource starvation, concurrent load, and adversarial input. The deterministic engine must maintain safety invariants under pressure. The symbolic verifier must not deadlock or livelock. The probabilistic engine must degrade gracefully - if tokens are limited, it must still produce valid proposals that the deterministic engine can evaluate. Failure under chaos is a design flaw, not a benchmark anomaly.
+
+The harness also supports regression testing on the skill set. Every skill is tested against a suite of known inputs and expected outputs. When a modification is proposed to any skill - whether through manual editing or the agent's own self-modification - the test suite runs first. A skill that fails its tests is rejected before it can propagate to the running image. This is not a convenience - it is the mechanism by which self-modification remains safe. The agent can propose changes, but the harness verifies them before the changes take effect.
+
+* Observability and the Thought Trace
+:PROPERTIES:
+:ID:       design-observability
+:END:
+
+When a human asks why the system made a decision, the answer must be findable. In most AI systems, the reasoning is ephemeral - it exists in the model's activations and disappears when the session ends. In Passepartout, every significant cognitive event is written to an Org buffer as it happens.
+
+The thought trace is the agent's journal, written in parallel with its reasoning. When the probabilistic engine generates a proposal, the trace records the input, the prompt, and the raw output. When the deterministic engine evaluates it, the trace records which rules were checked, which passed, which failed, and why. When an action is executed, the trace records the timestamp, the user who approved it (if human-in-the-loop), and the outcome.
+
+This is not logging in the traditional sense. Logs are forensically useful but are written in a machine format optimized for storage, not for human reading. The thought trace is written in Org-mode: headlines for major events, property drawers for structured data, tags for categorization. The human can open the trace in Emacs and navigate it like any other Org file. They can search for a specific decision, filter by time range, find all actions blocked by a specific rule, or see the complete trajectory of a multi-step task.
+
+The trace becomes the foundation for the Bouncer's learning. Every blocked action is in the trace. Every approved exception is in the trace. The human-in-the-loop decisions are in the trace. The system does not need to reconstruct what happened - it reads what happened from the trace it wrote.
+
+Without observability, the system is a black box that happens to produce correct outputs sometimes. With observability, the system is auditable. The human can see why a decision was made, identify where the reasoning failed, and course-correct the system or its own behavior accordingly.
+
+* The MCP Strategy
+:PROPERTIES:
+:ID:       design-mcp-strategy
+:END:
+
+The Model Context Protocol (MCP) is a standard for connecting AI systems to external tools and data sources. It defines how a client requests tools from a server, how the server exposes its capabilities, and how the client invokes them. The ecosystem is growing: MCP servers exist for GitHub, Slack, Postgres, filesystem access, and much more.
+
+Passepartout connects to this ecosystem, but not by becoming a Node.js runtime. The architecture is: external MCP servers communicate via stdio or SSE to a Lisp-native MCP client that runs in the same image as the agent. The client is pure Common Lisp - it parses the JSON-RPC messages, invokes the tools, and presents results to the agent as Lisp data structures. There is no serialization overhead between the agent and the MCP layer, no process boundary, no impedance mismatch.
+
+When the agent calls a tool via MCP, it receives a plist with the tool name, arguments, and result. The result is immediately usable by the agent's symbolic engine. When the agent generates a file, it can be written to the filesystem through an MCP filesystem server. When the agent needs to send a message, it can use an MCP Slack server. The agent does not need to know that these are MCP interactions - it sees only the plists that flow through its cognitive architecture.
+
+The alternative is to build MCP wrappers in Python or TypeScript and bridge to Lisp via subprocess. This is what OpenClaw does: a Node.js runtime that manages MCP servers, with a bridge to the Lisp process. The bridge introduces latency, serialization costs, and a maintenance burden. The Node.js process must be kept running. The bridge must be maintained across Lisp and JavaScript runtimes. The cognitive architecture must handle errors that cross the process boundary.
+
+Passepartout's native client is smaller, faster, and more maintainable. The MCP client is a skill, not a core component. It can be reloaded, replaced, or removed without restarting the agent. The agent can add new MCP tool integrations by loading new skills, not by deploying new infrastructure.
+
+* Local-First Architecture
+:PROPERTIES:
+:ID:       design-local-first
+:END:
+
+Passepartout is designed to run on the user's machine, on their hardware, with their data, without requiring an internet connection. This is not a deployment option - it is an architectural commitment. The system must be able to reason, plan, and act using only the resources available locally.
+
+The motivation is not merely philosophical. Cloud-based AI agents are economically incentivized to collect data, to train on user interactions, and to build lock-in through proprietary formats and network effects. When the agent runs locally, the user owns the hardware, owns the data, and can terminate the process without asking permission. There is no vendor that can change terms, no service that can go offline, no model that can be updated without consent.
+
+Technically, local-first means several things. The LLM must be able to run on local hardware. Passepartout supports Ollama as a provider, which runs quantized models on CPU and GPU without requiring an external API. The vector database must be local. Passepartout uses its own org-object store, which is a folder of Org files that the agent already owns. There is no ChromaDB or Qdrant to install, no cloud vector service to authenticate with.
+
+The symbolic engine does not require a network connection. The Prolog/Datalog reasoner that in v3.0.0 verifies neural proposals runs entirely in the Lisp image. The Bouncer's rule synthesis does not call an external service. The agent can operate in a disconnected environment indefinitely, resuming full capability when connectivity is restored.
+
+This does not mean Passepartout refuses to use cloud services when available and appropriate. It means cloud services are optional enhancements, not architectural requirements. The core is local. The user can choose to add cloud LLM providers for more capable inference, but the system functions without them.
+
+* Zero-Dependency Deployment
+:PROPERTIES:
+:ID:       design-zero-dependency
+:END:
+
+The simplest deployment is one that requires no installation steps. The user downloads one file, runs it, and the system works. Passepartout approximates this through SBCL's ability to produce standalone executables via save-lisp-and-die. The executable contains the Lisp runtime, the compiled system, and Quicklisp libraries - everything bundled into one binary.
+
+The practical reality is more nuanced. Building a truly standalone executable requires resolving all library dependencies at build time and embedding them in the binary. SBCL supports this, but the resulting binary is large (tens of megabytes), and updating any component requires a full rebuild. The current deployment model uses a Docker container that maps the user's memex directory as a volume. The container starts, loads the system, and is ready. No compilation on the user's machine, no dependency installation, no platform-specific quirks.
+
+The long-term goal is a single =passepartout= binary that the user runs. It starts a local web server on a Unix domain socket. The TUI connects through the socket. The user's Org files are in =~/memex/=. The binary is the only thing that needs to be installed.
+
+This stands in stark contrast to most AI agent systems, which require managing Python environments, npm packages, API keys, environment variables, and configuration files. OpenAI's agents SDK requires pip install, a Python environment, and external API access. OpenClaw requires Node.js, npm, and a plugin ecosystem that must be individually installed. LangChain requires a Python environment with dozens of dependencies that must be kept compatible.
+
+Passepartout's dependency model is SBCL plus Quicklisp. Quicklisp loads libraries on demand from the internet, but caches them locally. A system with internet access can fetch any library it needs. A system without internet access uses only the libraries it has already loaded - and those are preserved in the cache. The agent does not require internet access to function after initial setup.
+
+* Token Economics and Performance Advantage
+:PROPERTIES:
+:ID:       design-token-economics
+:END:
+
+This section analyzes how Passepartout's architectural decisions translate into token usage, latency, and cost versus competing agent designs (OpenClaw, Hermes, Claude Code).
+
+** The Core Insight: LLM as Expensive Resource, Not Default Engine
+
+Passepartout treats the LLM as a resource to be minimized. Every operation is designed to reduce LLM dependency. Competitors treat the LLM as the core engine through which all operations flow. This is not a difference of degree but of architecture.
+
+The three structural multipliers are:
+
+1. *Sparse tree retrieval* — loading relevant subtrees (200-800 tokens per file) rather than full files (1,500-5,000 tokens) = ~5-10x reduction per file access
+2. *Deterministic safety* — 9-vector dispatcher gate runs in pure Lisp (0 LLM tokens per verification) versus prompt-based guardrails (200-500 tokens per action) = infinite multiplier
+3. *REPL verification* — catches errors in-image (milliseconds, 0 LLM tokens) versus LLM correction round-trips (500-2,000 tokens per retry)
+
+These compound. A coding session touching 20 files, performing 10 actions, and triggering 3 errors saves ~50,000-100,000 tokens compared to the same session with Claude Code.
+
+** Per-Task Type Analysis
+
+*** Coding (debugging, refactoring, PR review)
+
+| Operation | Passepartout | Claude Code | Hermes (3-agent) | Savings vs Claude |
+|-----------|-------------|-------------|-------------------|--------------------|
+| File access (30 files) | 30 × 400 tok = 12,000 | 30 × 3,000 tok = 90,000 | 30 × 3,000 tok × 3 = 270,000 | 78,000 tok |
+| Reasoning rounds (20) | 20 × 3,000 tok = 60,000 | 20 × 4,000 tok = 80,000 | 20 × 3,000 tok × 3 = 180,000 | 20,000 tok |
+| Error correction (5 caught by REPL) | 0 (REPL) | 5 × 1,000 tok = 5,000 | 5 × 1,000 tok × 3 = 15,000 | 5,000 tok |
+| Safety verification | 0 (deterministic) | 500 tok/round × 20 = 10,000 | 200 tok/round × agents | 10,000 tok |
+| Agent coordination | 0 | 0 | 3,000-5,000 tok/task | 0 |
+| *Total* | *~72,000 tok* | *~185,000 tok* | *~475,000 tok* | *~113,000 tok (2.6x)* |
+
+Over a month of daily coding (20 sessions): ~2.3 million tokens saved. At typical API pricing ($2-15/M tokens), this saves $5-35/month.
+
+*** Knowledge Management (Zettelkasten, research, note-taking)
+
+Passepartout's strongest domain. The Org-mode native format and sparse tree retrieval create a 10-40x advantage because knowledge bases are the worst case for "load everything" architectures.
+
+| Operation | Passepartout | Competitor | Savings |
+|-----------|-------------|------------|---------|
+| Context assembly (500-node KB) | Peripheral outline + ~5 foveal nodes = 2,000-4,000 tok | Full serialization = 80,000-150,000 tok | 40-75x |
+| Semantic search (10 queries) | Vector lookup in-image = 0 LLM tok | LLM-assisted search = 5,000 tok | 5,000 tok |
+| Note creation (10 notes) | Deterministic Org writes = 0 LLM tok | 10 × 800 tok = 8,000 | 8,000 tok |
+| *Total per session* | *~7,000 tok* | *~95,000-165,000 tok* | *~13-24x* |
+
+*** Day-to-Day Life Management (calendar, tasks, reminders)
+
+| Operation | Passepartout | Competitor | Savings |
+|-----------|-------------|------------|---------|
+| Background maintenance | Deterministic heartbeat-driven = 0 LLM tok | Scheduled LLM calls or skipped | Variable |
+| User interactions (30/day) | 30 × 2,000 tok = 60,000 | 30 × 4,000 tok = 120,000 | 60,000 tok |
+| Context queries by TODO/tag | Hash table scan = 0 LLM tok | LLM-based search = 2,500 tok | 2,500 tok |
+| *Total per day* | *~60,000 tok* | *~122,500 tok* | *~2x* |
+
+The defining advantage: background maintenance (compaction, archiving, link repair) costs zero LLM tokens. Competing systems either skip this or pay LLM costs for it.
+
+*** Chatting (casual conversation)
+
+Chatting is inherently LLM-bound. Passepartout's edge is privacy filtering before content reaches the LLM and slightly smaller context footprint. Token savings are marginal (~1.3x).
+
+** The Dispatcher Learning Curve: Cost Decreases Over Time
+
+A unique architectural property: Passepartout's cost curve descends while competitors' ascends.
+
+Passepartout: As the dispatcher accumulates deterministic rules from Human-in-the-Loop decisions, fewer actions require LLM proposals. A file write that initially triggered a full LLM proposal → dispatcher review → HITL approval → rule extraction loop eventually becomes a deterministic rule check. Each hardened rule permanently reduces future token costs.
+
+Competitors: As context histories grow, safety instructions accumulate, and guardrails become more elaborate, each interaction costs more than the last. The only way to reduce cost is to cap context — sacrificing capability.
+
+After 12 months of learning, Passepartout's core reasoning costs could drop to 40-60% of baseline, while competitors' costs rise to 125-140% of baseline.
+
+The crossover point where Passepartout becomes structurally cheaper is estimated at 3-6 months depending on usage volume and task diversity.
+
+** Local LLM Viability
+
+Reduced context requirements change which model sizes deliver acceptable performance:
+
+| Model | Passepartout Viability | Competitor Viability |
+|-------|----------------------|---------------------|
+| Phi-3-mini 3.8B (4K ctx) | Viable for structured tasks | Context starvation |
+| Llama 3.1 8B (8K ctx) | Comfortable daily driver | Marginal |
+| Qwen 2.5 7B (4K ctx) | Viable for most tasks | Not viable |
+| Mistral 7B (8K ctx) | Comfortable | Marginal |
+| Llama 3.1 70B (128K ctx) | Overkill (but works) | Comfortable |
+
+KV cache memory scales with context length:
+
+| Context Window | KV Cache (Llama 3.1 8B, FP16) |
+|---------------|-------------------------------|
+| 4K tokens | ~67 MB |
+| 32K tokens | ~540 MB |
+| 128K tokens | ~2.1 GB |
+
+Passepartout at 4K effective context: ~67 MB KV cache. Competitor at 128K: ~2.1 GB. A 7-8B model on an RTX 3060 Ti (8 GB VRAM) or MacBook (16 GB unified memory) is a practical daily driver with Passepartout. Competitors at full context require 16-32 GB VRAM or cloud APIs.
+
+** Open Questions and Risks
+
+1. *Retrieval accuracy is the bottleneck.* If sparse tree retrieval loads the wrong subtree (low-similarity but causally relevant), the LLM makes unfixable errors. The architecture assumes embedding quality is "good enough" — this is untested at scale.
+
+2. *System prompt overhead can consume savings.* Every =think= cycle iterates all registered skills and calls every =system-prompt-augment= function. With 20+ skills, a trivial interaction could carry 3,000-8,000 tokens of overhead before user input is even processed. This overhead is flat per-call, so it disproportionately affects short interactions.
+
+3. *Model size vs context quality.* A 3.8B model with perfect context cannot match a 70B model on complex multi-file refactors regardless of context quality. Model size independently determines reasoning depth. The minimum viable model is likely 7-13B parameters for engineering work.
+
+4. *The 3-retry dispatcher loop.* When the dispatcher rejects a proposal, the rejection trace feeds back to the LLM for self-correction (up to 3 retries). If the dispatcher rejects 30% of proposals, the effective token multiplier is 1.39x per action. At 50% rejection (plausible during early use), it is 1.75x. This penalty decreases as the dispatcher accumulates rules.
+
+5. *Competitor evolution.* Sparse retrieval is not patentable. Claude Code, Copilot, and others will implement similar mechanisms. The architectural advantage is real but finite in duration. The deterministic safety gate is the harder-to-replicate differentiator.
+
+** Comparison Summary
+
+| Metric | Passepartout | Claude Code | Hermes | OpenClaw |
+|--------|-------------|-------------|--------|----------|
+| Active context (tokens) | 2,000-4,000 | 10,000-50,000+ | 5,000-15,000/agent | 10,000-40,000 |
+| File access cost (per file) | 200-800 tok | 1,500-5,000 tok | 1,500-5,000 tok × agents | 1,500-5,000 tok |
+| Safety verification cost | 0 (deterministic) | 200-500 tok/action | 200-500 tok/action × agents | 100-300 tok/action |
+| Agent coordination cost | 0 | 0 | 1,000-3,000 tok/task | 500-2,000 tok/task |
+| Error recovery cost | 0 (REPL) | 500-2,000 tok/retry | 500-2,000 tok/retry × agents | 500-2,000 tok/retry |
+| Long-term cost trend | Decreasing | Increasing | Increasing | Flat/Increasing |
+| Min viable local model | 3-4B params, 4K ctx | 30-70B params, 32K+ ctx | 30-70B params, 32K+ ctx | 7-13B params, 8K+ ctx |
+| Min VRAM for local | 4-6 GB | 16-32 GB | 24-48 GB | 8-16 GB |
+
+*Conclusion:* Passepartout's architecture is designed to produce 2-3x token savings for coding, 13-24x for knowledge management, and 2x for life management at v1.0.0 maturity. The three structural advantages — sparse trees, deterministic safety, and REPL verification — compound. The critical risk is implementation gap: achieving the retrieval precision, dispatcher learning, and REPL integration depth required to realize the design.

docs/ROADMAP.org

@@ -1,9 +1,12 @@
-#+TITLE: OpenCortex Evolutionary Roadmap
+#+TITLE: Passepartout Evolutionary Roadmap
 #+STARTUP: content
+#+FILETAGS: :docs:roadmap:
 
 * The Evolutionary Roadmap
 
-The roadmap is designed working backwards from SOTA parity (V 1.0.0), guiding each version toward a fully autonomous, self-editing agent. Each version builds on the previous, with features designed to be implemented in pure Common Lisp + Org-mode.
+The roadmap is designed working backwards from SOTA parity (v1.0.0), guiding each version toward a fully autonomous, self-editing agent. Each version builds on the previous, with features designed to be implemented in pure Common Lisp + Org-mode.
+
+The TODO states in each version's Tasks section are the authoritative task tracker. The feature tables describe what each version delivers.
 
 ** Non-Negotiable Identity
 - Pure Common Lisp + Org-mode. No JSON. No YAML. No external databases.
@@ -14,155 +17,522 @@ The roadmap is designed working backwards from SOTA parity (V 1.0.0), guiding ea
 
 ** Version Roadmap
 
-*** v0.1.0: The Autonomous Foundation — CURRENT RELEASE ✅
+*** v0.1.0: The Autonomous Foundation — RELEASED 2026-04-20
 
 The secure, auditable Lisp kernel. All core infrastructure in place.
 
-| Component                         | Status | Notes                                                                 |
-|-----------------------------------+--------+-----------------------------------------------------------------------|
-| Perceive-Reason-Act pipeline      | ✅     | 3-stage metabolic loop                                                |
-| Skills engine with jailed loading | ✅     | defskill, topological sort, hot-reload                                |
-| Policy skill (6 invariants)       | ✅     | Transparency, Autonomy, Bloat, Modularity, Mentorship, Sustainability |
-| Bouncer skill                     | ✅     | Command whitelist guard functions                                     |
-| Memory (org-object + Merkle)      | ✅     | Hash tables, snapshots, rollback                                      |
-| Lisp validator skill              | ✅     | Syntax validation before eval                                         |
-| Scribe + Gardener skills          | ✅     | Heartbeat-driven distillation + audit                                 |
-| LLM gateway (OpenRouter + Ollama) | ✅     | Provider cascade                                                      |
-| Shell actuator                    | ✅     | Safe command execution                                                |
-| Emacs bridge via Swank            | ✅     | Point/buffer updates                                                  |
-| FiveAM test suite                 | ✅     | Memory, boot, pipeline, act, communication                            |
-| Credentials vault                 | ✅     | Encrypted storage                                                     |
+**** DONE Perceive-Reason-Act pipeline
+:PROPERTIES:
+:ID:       id-06f10b9a-4054-4dea-a927-b0935fbdcd2f
+:CREATED:  [2026-03-22 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-20 Mon]
+:END:
 
-*** v0.2.0: Interactive Refinement ✅
+**** DONE Skills engine with jailed loading
+:PROPERTIES:
+:ID:       id-dc83944f-3923-4142-b324-c317dacd6b0b
+:CREATED:  [2026-03-22 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-20 Mon]
+:END:
+
+**** DONE Policy skill (6 invariants)
+:PROPERTIES:
+:ID:       id-929c84b7-d6ae-42b9-a8b5-d9df962db826
+:CREATED:  [2026-03-22 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-20 Mon]
+:END:
+
+**** DONE Memory (memory-object + Merkle hashing)
+:PROPERTIES:
+:ID:       id-3a96b384-cacf-4da0-8faa-1647739feba9
+:CREATED:  [2026-03-22 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-20 Mon]
+:END:
+
+**** DONE Scribe + Gardener background workers
+:PROPERTIES:
+:ID:       id-3f618a38-ec23-4034-ba3c-ef272e212e2b
+:CREATED:  [2026-03-22 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-20 Mon]
+:END:
+
+**** DONE LLM gateway (OpenRouter, Ollama)
+:PROPERTIES:
+:ID:       id-f5d870e2-cbd2-4c00-a8d4-174ab4118afc
+:CREATED:  [2026-04-11 Sat]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-20 Mon]
+:END:
+
+**** DONE Shell actuator, Emacs bridge, credentials vault
+:PROPERTIES:
+:ID:       id-7ca3167f-8353-4bb7-8b97-c039017716b0
+:CREATED:  [2026-04-11 Sat]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-20 Mon]
+:END:
+
+**** DONE FiveAM test suite
+:PROPERTIES:
+:ID:       id-925d4180-764b-4219-8bdc-8e1849572da1
+:CREATED:  [2026-04-11 Sat]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-20 Mon]
+:END:
+
+*** v0.2.0: Interactive Refinement — RELEASED 2026-04-29
 
 The "Brain" meets the "Machine." Standardization and professionalization of the user interface and environment.
 
-| Feature              | Status | Notes                                                   |
-| :---                 | :---:  | :---                                                    |
-| Minimalist Kernel    | ✅     | Purified harness targeting I/O & Memory only.           |
-| Sovereign Skills     | ✅     | Diagnostics and Configuration extracted to Userland.    |
-| POSIX/XDG Compliance | ✅     | Standardized paths (~/.config, ~/.local).               |
-| Professional TUI     | ✅     | Styled, scrollable, and verified Lisp interface.        |
-| Onboarding Wizard    | ✅     | Modular Lisp setup for multiple LLM providers.          |
-| Linkage Command      | ✅     | Real-time verification of external gateways (Telegram). |
-| Self-Editing         | ✅     | Detects errors, applies fixes, learns from outcomes.    |
-| Memory Rollback      | ✅     | Snap back to known-good state on critical errors.       |
+**** DONE Professional TUI (Croatoan-based, styled, scrollable)
+:PROPERTIES:
+:ID:       id-57cef382-fe14-42e6-aade-03e05e3e920b
+:CREATED:  [2026-04-28 Tue]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-29 Wed]
+:END:
+
+**** DONE Self-editing (error detection, surgical fix, hot-reload)
+:PROPERTIES:
+:ID:       id-459b8275-9979-4d0f-8d61-a9af883930d4
+:CREATED:  [2026-04-23 Wed]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-29 Wed]
+:END:
+
+**** DONE Enhanced utilities (structural Lisp/Org manipulation + REPL)
+:PROPERTIES:
+:ID:       id-23f37c0d-4e77-4dc3-ab43-52a5987eb426
+:CREATED:  [2026-04-23 Wed]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-29 Wed]
+:END:
+
+**** DONE Onboarding wizard (modular Lisp setup for LLM providers)
+:PROPERTIES:
+:ID:       id-bd497de7-3533-4056-b89f-2c992d2ea28b
+:CREATED:  [2026-04-28 Tue]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-29 Wed]
+:END:
+
+**** DONE Memory rollback (snapshot and restore)
+:PROPERTIES:
+:ID:       id-fd2fb6e3-03e7-4e22-b9e9-a7eecfd06718
+:CREATED:  [2026-04-12 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-04-29 Wed]
+:END:
+
+**** DONE Secret Exposure Gate, Shell Safety, Lisp Validation
+:PROPERTIES:
+:ID:       id-aa53c128-195b-42d4-9838-2def59faf7cf
+:CREATED:  [2026-05-02 Sat]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-02 Sat]
+:END:
+
+**** DONE Multi-distro deployment (Debian+Fedora, systemd, Docker)
+:PROPERTIES:
+:ID:       id-783df999-f7fe-45c8-896d-2fd07c604d64
+:CREATED:  [2026-05-02 Sat]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-02 Sat]
+:END:
+
+**** DONE Project rename to Passepartout (files, packages, env vars)
+:PROPERTIES:
+:ID:       id-91724874-aa0d-4804-9220-8bc5551f1366
+:CREATED:  [2026-05-02 Sat]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-02 Sat]
+:END:
+
+**** DONE 31 org files with full literate prose
+:PROPERTIES:
+:ID:       id-597b2a92-aac6-481a-b2c4-4f9842ced97c
+:CREATED:  [2026-05-02 Sat]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-02 Sat]
+:END:
 
 *** v0.3.0: Event Orchestration + HITL
 
-Unified control plane and Human-in-the-Loop (HITL) state management.
+Unified control plane and Human-in-the-Loop state management.
 
-| Feature                        | Description                                                                                                                                               |
-|--------------------------------+-----------------------------------------------------------------------------------------------------------------------------------------------------------|
-| org-skill-event-orchestrator   | Unified hooks + cron + routing. Three tiers: =:REFLEX= (no LLM), =:COGNITION= (light LLM), =:REASONING= (full LLM).                                       |
-| Human-in-the-Loop (HITL)       | Continuation-based interaction. The agent can "suspend" its cognitive loop to ask for permission or clarification and resume precisely where it left off. |
-| org-skill-context-manager      | Stack-based project scoping. =push-context= / =pop-context=. Path resolution relative to context.                                                         |
-| Memory scope segmentation      | =:scope= property on org-objects: memex/session/project. Scope-aware retrieval.                                                                           |
-| Model-tier routing             | Complexity-based model selection: heartbeat → tiny, user → medium, reasoning → large.                                                                     |
-| Slash commands                 | =M-x= style command palette in TUI. Commands defined in Org-mode.                                                                                         |
-| Asynchronous Embedding Gateway | Provider-agnostic vector generation (Ollama, local llama.cpp) via background worker.                                                                      |
-| Telegram Gateway Skill         | Full implementation of the message receiver for linked Telegram bots.                                                                                     |
+** Tasks
+
+*** Remediation: Backfill v0.1.0/v0.2.0 Gaps
+
+These features were marked DONE in prior versions but are stubs, no-ops, or
+missing. They must be completed before v0.3.0 feature work proceeds.
+
+**** DONE P0: Add vault-get-secret / vault-set-secret wrappers :backfill:
+CLOSED: [2026-05-03 Sun 10:42]
+:PROPERTIES:
+:ID:       id-vault-secret-wrappers
+:CREATED:  [2026-05-03 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-03 Sun 10:42]
+:END:
+=vault-get-secret= and =vault-set-secret= are exported from =core-defpackage=
+and called from =gateway-manager.org= (lines 36, 86, 180) but never defined.
+=gateway-link= crashes at runtime. Add one-line wrappers in =security-vault.org=
+that delegate to the existing =vault-get=/=vault-set= with ~:type :secret~.
+
+**** DONE P0: system-archivist — Scribe + Gardener :backfill:
+CLOSED: [2026-05-03 Sun 10:42]
+:PROPERTIES:
+:ID:       id-archivist-distillation
+:CREATED:  [2026-05-03 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-03 Sun 10:42]
+:END:
+Scribe: distill daily Org logs into atomic Zettelkasten notes with backlinks.
+Gardener: scan for broken =[[file:]]= links and orphaned =memory-object= entries.
+Wire both as cron jobs via =system-event-orchestrator=.
+Depends on: orchestrator bootstrap (P1 item below).
+
+**** DONE P0: system-self-improve — surgical edit + error fix :backfill:
+CLOSED: [2026-05-03 Sun 10:42]
+:PROPERTIES:
+:ID:       id-self-improve-real
+:CREATED:  [2026-05-03 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-03 Sun 10:42]
+:END:
+= self-improve-edit=: =org-read-file= → text replace → =snapshot-memory= →
+=org-write-file= → =literate-block-balance-check= → tangle → reload.
+=self-improve-fix=: parse error log → =lisp-structural-check= →
+=lisp-extract= → surgical repair → =repl-eval= verify.
+Remove the dead first =defskill= registration (trigger nil, overwritten by second).
+Depends on: =programming-org=, =programming-literate= (P0 items below).
+
+**** DONE P0: programming-org — fix org-modify + org-ast-render :backfill:
+CLOSED: [2026-05-03 Sun 10:42]
+:PROPERTIES:
+:ID:       id-org-modify-render
+:CREATED:  [2026-05-03 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-03 Sun 10:42]
+:END:
+=org-modify(filepath, id, changes)= ignores ~changes~ and only logs. Should locate
+node by ID in file and apply changes to its content.
+=org-ast-render(ast)= returns a hardcoded placeholder. Should convert plist AST
+back to Org text.
+
+**** DONE P0: programming-literate — fix both stubs :backfill:
+CLOSED: [2026-05-03 Sun 10:42]
+:PROPERTIES:
+:ID:       id-literate-real
+:CREATED:  [2026-05-03 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-03 Sun 10:42]
+:END:
+=literate-block-balance-check=: verify all =#+begin_src lisp= blocks in an Org file
+have balanced parentheses. Returns T if all balanced, error message otherwise.
+=literate-tangle-sync-check=: verify =.lisp= file matches tangled output of =.org= file.
+
+**** DONE P1: system-event-orchestrator — bootstrap implementation :backfill:
+CLOSED: [2026-05-03 Sun 10:42]
+:PROPERTIES:
+:ID:       id-orchestrator-bootstrap
+:CREATED:  [2026-05-03 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-03 Sun 10:42]
+:END:
+=orchestrator-bootstrap= currently only logs. Should scan Org files for =#+HOOK:=
+and =#+CRON:= properties and register them via the existing registries.
+Prerequisite for archivist cron jobs.
+
+**** DONE P1: system-memory — memory introspection :backfill:
+CLOSED: [2026-05-03 Sun 10:42]
+:PROPERTIES:
+:ID:       id-memory-inspect
+:CREATED:  [2026-05-03 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-03 Sun 10:42]
+:END:
+=memory-inspect= only logs. Should return structured statistics: object count
+by type, TODO state distribution, orphan count, snapshot list. Trigger on
+=:INTROSPECTION= sensor type.
+
+**** DONE P1: Path relic — skills/ → lisp/ in skill-initialize-all :backfill:
+CLOSED: [2026-05-03 Sun 10:42]
+:PROPERTIES:
+:ID:       id-path-relic
+:CREATED:  [2026-05-03 Sun]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-03 Sun 10:42]
+:END:
+=skill-initialize-all= and =context-skill-source= resolve against =skills/=
+under =$PASSEPARTOUT_DATA_DIR=. Core and skills were merged into =lisp/=.
+Update both functions to point at =lisp/=.
+
+**** TODO P2: core-context — semantic retrieval (embeddings) :backfill:
+:PROPERTIES:
+:ID:       id-embeddings
+:CREATED:  [2026-05-03 Sun]
+:END:
+=org-object-vector= is never populated; all similarities are 0.0. Generate
+embeddings via Ollama =nomic-embed-text= at ingest time. Store in
+=memory-object.vector=. Fallback: TF-IDF bag-of-words.
+
+**** TODO P2: core-context — subtree-based skill source loading :backfill:
+:PROPERTIES:
+:ID:       id-skill-subtree
+:CREATED:  [2026-05-03 Sun]
+:END:
+=context-skill-source= reads entire Org files. Add =context-skill-subtree=
+for targeted retrieval of specific function docs or test blocks by heading name.
+
+**** TODO P3: Variable name drift normalization (out of scope for now) :backfill:
+:PROPERTIES:
+:ID:       id-name-normalization
+:CREATED:  [2026-05-03 Sun]
+:END:
+=*memory*= (context) vs =*memory-store*= (memory). =*skills-registry*= with
+underscore (reason/context) vs =*skill-registry*= with hyphen (defpackage).
+Normalization pass across all modules. Touches every file — do after P0-P2
+are stable. Do not mix with functional changes.
+
+*** DONE Project Renaming (Bouncer → Dispatcher)
+:PROPERTIES:
+:ID:       id-9e779580-287b-b3d1-37b9-bcefd750bf9e
+:CREATED:  [2026-05-01 Fri 15:40]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-02 Sat 22:00]
+:END:
+The Dispatcher's role has evolved beyond security guard. It is the seed of the deterministic engine — it learns to execute procedures without invoking the neural net.
+
+*** DONE Event Orchestrator (unified hooks+cron+routing)
+:PROPERTIES:
+:ID:       id-d35aea3d-2e5f-4a12-a9b0-1c2d3e4f5a6b
+:CREATED:  [2026-05-02 Sat 14:00]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-02 Sat 22:36]
+:END:
+Unified control plane for hooks, cron, and complexity-based routing.
+- *hook-registry* + *cron-registry* + tier classifier
+- Hooks via ~#+HOOK:~ Org-mode properties
+- Three complexity tiers: ~:REFLEX~ (no LLM), ~:COGNITION~ (light LLM), ~:REASONING~ (full LLM)
+- Hooked into heartbeat for cron processing
+- Rule-based tier classifier (overrideable via ~*tier-classifier*~)
+
+*** TODO Context Manager (project scoping)
+:PROPERTIES:
+:ID:       id-a10ed34e-9f37-4a15-b499-46672c00d951
+:CREATED:  [2026-05-02 Sat 23:00]
+:END:
+Stack-based context with ~push-context~ / ~pop-context~.
+Path resolution relative to current context.
+Memory scope: ~:scope~ property on memory-objects (memex/session/project).
+Implement lazy-loading proxies for large-scale memory traversal.
+
+*** TODO Model-Tier Routing (cost optimization)
+Extend ~*model-selector-fn*~ for complexity-based routing.
+- Heartbeats → smallest model
+- User input → medium model
+- Complex reasoning → large model
+
+*** TODO Memory Scope Segmentation
+Extend memory-object with ~:scope~ property.
+- ~:memex~ (permanent knowledge), ~:session~ (ephemeral), ~:project~ (current work)
+- Scope-aware retrieval in memory layer
+
+*** TODO Asynchronous Embedding Gateway
+Provider-agnostic vector generation (Ollama, llama.cpp, OpenAI).
+Edits mark nodes as ~:vector :pending~; background worker batches and updates Merkle tree.
+
+*** TODO TUI Experience (Daily Driver Quality)
+The TUI is a standalone Croatoan app in ~org/gateway-tui.org~.
+None of these changes require daemon modifications — the protocol between TUI and
+daemon (port 9105, framed plists) is stable.
+
+- P0: Chat scrollback (Page Up/Down) — ~2h
+- P0: Input history (up/down arrows) — ~1h
+- P1: Status bar (daemon, model, time) — ~3h
+- P1: Message rendering (timestamps, colors, wrapping) — ~2h
+- P2: Command palette (/help redesign) — ~4h
+- P2: Multi-line input (Shift+Enter) — ~3h
+- P3: Background activity indicator — ~2h
+- P4: Tab completion for / commands — ~3h
+- P4: Configurable theme — ~4h
+
+*** TODO Human-in-the-Loop (HITL)
+Continuation-based interaction. The agent can suspend its cognitive loop to ask for
+permission or clarification and resume precisely where it left off. Builds on the
+dispatcher's existing Flight Plan mechanism.
 
 *** v0.4.0: Long-Horizon Planning + Git Workflows
 
 Structured tracking, failure handling, and course correction for multi-step engineering work.
 
-| Feature                | Description                                                                                                                                 |
-|------------------------+---------------------------------------------------------------------------------------------------------------------------------------------|
-| org-skill-long-horizon | Decompose tasks into Org-mode headline trees. Terminal states: =:done= / =:blocked= / =:stuck=. Parent summarises children. Branch pruning. |
-| org-skill-git-steward  | Status, diff, commit, push, branch. Policy enforces commit-before-modify.                                                                   |
-| TDD runner             | FiveAM on file save. =:test-failure= events. Hook into self-fix for auto-repair.                                                            |
-| Deep Emacs integration | Full org-agenda awareness. Navigate, clock time, refile, archive.                                                                           |
+** Tasks
+
+*** TODO Long-Horizon Planning (task tree DAG)
+Decompose complex tasks into Org-mode headline trees.
+Terminal states: ~:todo~ → ~:next-action~ → ~:in-progress~ → ~:done~ / ~:blocked~ / ~:stuck~.
+Parent summarises child results.
+Branch pruning when paths fail.
+
+*** TODO Git Steward (version control integration)
+Status, diff, commit, push, branch operations.
+Policy enforces commit-before-modify gate.
+Log commits to memory.
+
+*** TODO TDD Runner Integration
+Run FiveAM tests on file save.
+Inject ~:test-failure~ event on red.
+Hook into self-fix for auto-repair proposals.
+
+*** TODO Deep Emacs Integration
+Full org-agenda awareness: navigate, clock time, refile, archive.
+Uses org-element + org-id.
 
 *** v0.5.0: Interactive Actuation & Environment Stewardship
 
 Interactive terminal sessions and autonomous dependency management.
 
-| Feature                  | Description                                                                                                                         |
-|--------------------------+-------------------------------------------------------------------------------------------------------------------------------------|
-| Interactive PTY Actuator | Stream long-running process output to the context window (e.g., `npm run dev`, REPLs) with async interrupt control.                 |
-| The Environment Steward  | Autonomously detect missing dependencies (e.g., "Command not found"), propose an installation command, and retry the failed action. |
+** Tasks
+
+*** TODO Interactive PTY Actuator
+Stream long-running process output to the context window (e.g., ~npm run dev~, REPLs).
+Async interrupt control (Ctrl+C emulation).
+
+*** TODO The Environment Steward
+Autonomously detect missing dependencies ("Command not found").
+Propose installation command and retry the failed action.
 
 *** v0.6.0: Concurrency + Creator + GTD
 
 The agent bootstraps itself and manages parallel workstreams.
 
-| Feature                     | Description                                                                                                                           |
-|-----------------------------+---------------------------------------------------------------------------------------------------------------------------------------|
-| org-skill-sub-agent-manager | Lightweight Lisp-native sub-agents (via bordeaux-threads) that share memory but have isolated execution contexts for background work. |
-| org-skill-creator           | LLM drafts complete skill org-file from natural language. Mandatory: syntax validation → jail-load → test → register.                 |
-| org-skill-architect         | Scan =:STATUS: FROZEN= PRDs. Generate Phase B PROTOCOL.                                                                               |
-| org-skill-gtd               | Full GTD cycle: capture, clarify, organize, reflect, engage. org-gtd v4.0 DAG (=:TRIGGER:=, =:BLOCKER:=).                             |
-| Consensus loop              | Run multiple providers for critical decisions. Compare results, detect disagreements.                                                 |
-| Web research                | Headless Chromium via Python bridge. Text extraction, screenshots, Gemini Web UI automation.                                          |
+** Tasks
+
+*** TODO Skill Creator (autonomous skill generation)
+LLM drafts complete skill org-file from natural language.
+Mandatory: syntax validation → jail-load → test → register.
+
+*** TODO Architect Agent (PRD → PROTOCOL)
+Scan ~:STATUS: FROZEN~ PRDs. Generate Phase B PROTOCOL from Phase A.
+
+*** TODO GTD Integration (project tracking)
+Full GTD cycle: capture, clarify, organize, reflect, engage.
+org-gtd v4.0 DAG (~:TRIGGER:~, ~:BLOCKER:~).
+
+*** TODO Consensus Loop (multi-model agreement)
+Run multiple providers for critical decisions.
+Compare results, detect disagreements.
+Confidence scoring.
+
+*** TODO Web Research (Playwright browsing)
+Headless Chromium via Python bridge.
+Text extraction, screenshots, Gemini Web UI automation.
+
+*** TODO Memex Management (PARA lifecycle)
+Archive DONE tasks, suggest refiling.
+Detect orphaned nodes.
+PARA/Zettelkasten maintenance.
 
 *** v0.7.0: Visual Grounding & MCP Bridge
 
 Multimodal visual interaction and ecosystem-wide tool compatibility.
 
-| Feature               | Description                                                                                                                                                |
-|-----------------------+------------------------------------------------------------------------------------------------------------------------------------------------------------|
-| Computer Use / Vision | Allow the agent to request host OS or browser screenshots, analyze the UI, and issue precise X/Y coordinate click/type commands via an X11/Wayland bridge. |
-| MCP Gateway Bridge    | Lisp-native client for the Model Context Protocol, allowing OpenCortex to connect to the entire ecosystem of external tools and data sources.              |
+** Tasks
+
+*** TODO Computer Use / Vision
+Allow the agent to request host OS or browser screenshots.
+Analyze UI and issue precise X/Y coordinate click/type commands via X11/Wayland bridge.
+
+*** TODO MCP Gateway Bridge
+Lisp-native client for the Model Context Protocol.
+Connect Passepartout to external tools and data sources.
 
 *** v0.8.0: The Evaluation Harness
 
 Automated benchmarking to mathematically prove the agent's reasoning capabilities.
 
-| Feature           | Description                                                                                                                                    |
-|-------------------+------------------------------------------------------------------------------------------------------------------------------------------------|
-| SWE-Bench Harness | Automated pipeline that clones repositories, feeds GitHub issues, tracks the multi-step resolution trajectory, runs tests, and scores success. |
+** Tasks
+
+*** TODO SWE-Bench Harness
+Automated pipeline that clones repositories and feeds GitHub issues.
+Track multi-step resolution trajectory, run tests, and score success.
 
 *** v1.0.0: SOTA Parity
 
-Feature-complete agent competitive with commercial agents. All features reimplemented in pure Lisp.
+Feature-complete agent competitive with commercial agents. All features from v0.2.0 through v0.8.0 combined, verified, and tested end-to-end.
 
-| Area              | Status    | Notes                                     |
-|-------------------+-----------+-------------------------------------------|
-| Self-improvement  | ✅ v0.2.0 | Self-edit + lisp-repair                   |
-| Planning          | ✅ v0.4.0 | Task tree DAGs with terminal states       |
-| Tool ecosystem    | 🟡 v0.4.0 | 10+ cognitive tools                       |
-| Context window    | ✅ v0.3.0 | Semantic search + scope segmentation      |
-| Safety            | ✅ v0.1.0 | 6 Policy invariants + formal verification |
-| Multi-step tasks  | ✅ v0.4.0 | Task trees with failure handling          |
-| Code editing      | ✅ v0.2.0 | Full org-mode file read/write             |
-| Memory            | ✅ v0.2.0 | Vector recall in org-object               |
-| Emacs integration | ✅ v0.2.0 | Full org-mode control                     |
-| Autonomy          | ✅ v0.1.0 | 100% local capable (Ollama)               |
+| Area | Parity Target |
+|------|--------------|
+| Self-improvement | Claude Code self-debug |
+| Planning | ULTRAPLAN equivalent |
+| Tool ecosystem | 10+ cognitive tools |
+| Context window | Semantic search + scope segmentation |
+| Safety | 6 Policy invariants + formal verification |
+| Multi-step tasks | Task trees with terminal states |
+| Code editing | Full file read/write via org manipulation |
+| Memory | Vector recall in memory-object |
+| Emacs integration | Full org-mode control (exceeds Claude Code) |
+| Autonomy | 100% local capable (exceeds Claude Code) |
 
 *** v2.0.0: Lisp Machine Emergence
 
 From Lisp-using agent to true Lisp machine. Agent IS the Emacs process.
 
-| Feature | Description |
-|---------|-------------|
-| Lish: Lisp editor | Org-mode as IDE. Org-babel for interactive evaluation. Full REPL in TUI. No bridge needed. |
-| Lish: Shell replacement | Lisp-based shell that speaks plists. Org-mode buffers as file system. |
+- Lish: Lisp editor — Org-mode as IDE. Org-babel for interactive evaluation. Full REPL in TUI.
+- Lish: Shell replacement — Lisp-based shell that speaks plists. Org-mode buffers as file system.
 
 *** v3.0.0: Neurosymbolic Maturity
 
 Deterministic planner takes the wheel. LLM relegated to semantic translation.
 
-| Feature | Description |
-|---------|-------------|
-| Deterministic planner | Pure Lisp task scheduler. No LLM needed for planning. |
-| Self-correcting gates | Gates learn from false positives (user override patterns). |
+- Deterministic planner: Pure Lisp task scheduler. No LLM needed for scheduling.
+- Self-correcting gates: Gates learn from false positives (user override patterns).
 
 *** v4.0.0: AI Stack Internalized
 
 The agent understands its own weights. No external inference.
 
-| Feature | Description |
-|---------|-------------|
-| Llama.cpp in Lisp | FFI binding. No Python subprocess. Pure Common Lisp inference. |
-| Weights as sexps | Neural weights as Lisp data structures. Homoiconic model introspection. |
+- Llama.cpp in Lisp: FFI binding. No Python subprocess. Pure Common Lisp inference.
+- Weights as sexps: Neural weights as Lisp data structures. Homoiconic model introspection.
 
 *** v5.0.0: True Agency
 
 World models, temporal reasoning, goal persistence across restarts.
 
-| Feature | Description |
-|---------|-------------|
-| World models | Predictive models of user behavior, project dynamics, system state. |
-| Temporal reasoning | Scheduling, deadlines, elapsed duration awareness. |
-| Goal persistence | Goals survive restarts. Long-term projects in org-objects. |
+- World models: Predictive models of user behavior, project dynamics, system state.
+- Temporal reasoning: Scheduling, deadlines, elapsed duration awareness.
+- Goal persistence: Goals survive restarts. Long-term projects in memory-objects.

docs/USER_MANUAL.org

@@ -1,21 +1,34 @@
-#+TITLE: OpenCortex User Manual
-#+AUTHOR: OpenCortex Contributors
+#+TITLE: Passepartout User Manual
+#+AUTHOR: Passepartout Contributors
 #+STARTUP: content
 #+FILETAGS: :docs:manual:
 
 * Introduction
-Welcome to OpenCortex v0.1.0 (The Autonomous Foundation). OpenCortex is a neurosymbolic AI agent and a Lisp Machine operating system designed to autonomously maintain your Memex (knowledge base) and interact with you via multiple, equal-citizen interfaces.
+Welcome to Passepartout v0.1.0 (The Autonomous Foundation). Passepartout is a neurosymbolic AI agent and a Lisp Machine operating system designed to autonomously maintain your Memex (knowledge base) and interact with you via multiple, equal-citizen interfaces.
 
 * Installation
-OpenCortex is bootstrapped via a single shell script.
+Passepartout is bootstrapped via a single shell script.
+
+** Quick start (curl)
 
 #+begin_src bash
-git clone ssh://git@10.10.10.201:2222/amr/opencortex.git
-cd opencortex
-./opencortex.sh setup
+curl -fsSL https://raw.githubusercontent.com/amrgharbeia/passepartout/main/passepartout.sh | bash -s configure
 #+end_src
 
-This process will install SBCL, Quicklisp, and prompt you to create a `.env` file for your API keys.
+** From a clone
+
+#+begin_src bash
+git clone https://github.com/amrgharbeia/passepartout.git ~/projects/passepartout
+~/projects/passepartout/passepartout.sh configure
+#+end_src
+
+Both methods will:
+1. Install system dependencies (SBCL, Emacs, git, curl, socat — detected for Debian or Fedora)
+2. Install Quicklisp (Common Lisp package manager)
+3. Tangle literate Org sources into runnable Lisp
+4. Launch the interactive setup wizard (LLM providers, gateways)
+
+If you already have Emacs installed, the installer skips it and uses your existing installation.
 
 * Configuration
 The system is configured via a `.env` file in the project root. Essential variables include:
@@ -24,33 +37,88 @@ The system is configured via a `.env` file in the project root. Essential variab
 - `PROVIDER_CASCADE`: The fallback order for LLM providers (e.g., `openrouter,ollama,anthropic`).
 - `MEMEX_DIR`: The absolute path to your knowledge base (defaults to `~/memex`).
 
-* Interacting with OpenCortex
+* Interacting with Passepartout
 Because of the Unified Envelope Architecture, the kernel treats all clients as interchangeable. You must first boot the background daemon:
 
 #+begin_src bash
-./opencortex.sh --boot &
+./passepartout.sh --boot &
 #+end_src
 
 ** Terminal User Interface (TUI)
 For a rich, split-pane terminal experience:
 #+begin_src bash
-./opencortex.sh tui
+./passepartout.sh tui
 #+end_src
 
 ** Command Line Interface (CLI)
 For raw, pipe-friendly interaction:
 #+begin_src bash
-./opencortex.sh cli
+./passepartout.sh cli
 #+end_src
 
 ** Emacs Integration
-OpenCortex functions as your "foveal vision" inside Emacs.
+Passepartout functions as your "foveal vision" inside Emacs.
 1. Ensure `org-agent.el` is loaded.
-2. Run `M-x opencortex-connect`.
-3. Interact via the `*opencortex-chat*` buffer.
+2. Run `M-x passepartout-connect`.
+3. Interact via the `*passepartout-chat*` buffer.
 
 * The Memex Structure
-OpenCortex assumes a local folder structure representing your "Memex".
+Passepartout assumes a local folder structure representing your "Memex".
 - Core memories and identities are mapped to Org-mode files.
 - The `Scribe` background worker distills chronological logs into structured Zettelkasten notes.
-- The `Gardener` continuously repairs broken links and flags orphaned nodes.
+- The `Gardener` continuously repairs broken links and flags orphaned nodes.
+
+* Deployment
+
+** Bare metal (Debian / Fedora)
+
+The ~configure~ command supports both Debian-based (Ubuntu, Pop, Mint) and Fedora-based (RHEL, Rocky) distributions. It detects your distro automatically and installs the correct packages.
+
+#+begin_src bash
+./passepartout.sh configure              # interactive
+./passepartout.sh configure --non-interactive  # headless
+./passepartout.sh configure --with-firewall    # also open port 9105
+#+end_src
+
+After configuration, you can re-run ~configure~ any time to add providers or link gateways.
+
+** systemd service (auto-start on boot)
+
+#+begin_src bash
+./passepartout.sh install service
+#+end_src
+
+Installs a user-level systemd unit that starts the daemon on login. Logs are available via ~journalctl --user -u passepartout.service -f~.
+
+To remove:
+
+#+begin_src bash
+./passepartout.sh uninstall service
+#+end_src
+
+** Docker
+
+A Debian-based Docker image is provided for containerized deployment.
+
+#+begin_src bash
+cd infrastructure/docker
+docker-compose up -d
+#+end_src
+
+This builds an image from ~debian:trixie-slim~ with all dependencies pre-installed. The memex directory is mounted from the host.
+
+** Backup
+
+#+begin_src bash
+./passepartout.sh backup ~/my-backup.tar.gz
+#+end_src
+
+Backs up the config, data, and memex directories.
+
+** Restore
+
+#+begin_src bash
+./passepartout.sh restore ~/my-backup.tar.gz
+#+end_src
+
+Restores from a backup file. Run ~passepartout doctor~ afterward to verify integrity.

docs/v0.2.x-REMEDIATION.org

@@ -0,0 +1,253 @@
+#+TITLE: v0.2.x Remediation Plan
+#+AUTHOR: 
+#+STARTUP: content
+#+FILETAGS: :docs:plan:remediation:
+
+* Summary
+
+Features marked DONE in the ROADMAP for v0.1.0 and v0.2.0 but whose implementations
+are stubs, no-ops, or missing critical functionality. These should have been
+completed in their respective versions and must be addressed before v0.3.0
+development proceeds.
+
+* P0: system-archivist — Proper Distillation and Link Maintenance
+
+** Claimed status**: =DONE= (v0.1.0: "Scribe + Gardener background workers" + v0.2.0: "31 org files with full literate prose")
+
+** Actual state**: =archivist-log= is a trivial log wrapper (~10 lines). No knowledge
+distillation, no broken link detection, no orphaned node flagging.
+
+** What it should do**:
+
+*** Scribe (knowledge distillation)
+1. Read daily Org log files from the Memex =daily/= directory
+2. Identify new entries (since last processed commit or timestamp)
+3. Extract conceptual claims, decisions, and atomic facts from prose
+4. Generate atomic Zettelkasten notes in =notes/= with:
+   - Descriptive snake_case filename (no dates)
+   - =:CREATED:= property from the source log's date
+   - =Source:= backlink to the original daily file and headline
+   - Tags inferred from content and parent file
+5. Track processed state to avoid re-distilling the same content
+
+*** Gardener (structural maintenance)
+1. Scan all Org files in the Memex for broken =[[file:...][...]]= links
+2. Scan =memory-store= for =memory-object= entries whose =:parent-id= or =:children=
+   references point to deleted objects (orphaned nodes)
+3. Flag broken links and orphans with =:GARDENER: broken-link= or =:GARDENER: orphan= tags
+4. Generate a maintenance report as a Org buffer the user can review
+
+*** Implementation approach
+- Wire into =system-event-orchestrator= as cron jobs:
+  - Scribe: daily cron (="<%%Y-%%m-%%d %%a +1d>"=, tier =:cognition=)
+  - Gardener: weekly cron (="<%%Y-%%m-%%d %%a +1w>"=, tier =:cognition=)
+- Use =orchestrator-register-cron= to schedule
+- Replace the trivial =archivist-log= function with real implementation
+- Track last-processed state via =memory-store= (:LATEST_PROCESSED_DATETIME property)
+  or git commit hash
+
+** Dependencies**: =system-event-orchestrator= (cron scheduling), =core-memory= (object store)
+
+** Verification**: FiveAM test that creates a daily log with known content, runs the
+Scribe, and asserts that an atomic note was created with correct backlinks.
+
+* P0: system-self-improve — Surgical Self-Editing and Self-Repair
+
+** Claimed status**: =DONE= (v0.2.0: "Self-editing (error detection, surgical fix, hot-reload)")
+
+** Actual state**: =self-improve-edit= does =(declare (ignore old-text new-text))= followed by
+a log message — no actual text transformation. =self-improve-fix= same pattern.
+The skill's trigger is =nil= so it never fires.
+
+** What it should do**:
+
+*** Self-edit (surgical text replacement)
+1. Accept (=filepath=, =old-text=, =new-text=) and apply the transformation
+2. Read the file, locate =old-text= (with exact match verification), replace with =new-text=
+3. If the target is an Org file with a =#+begin_src lisp= block, tangling the file
+   and reloading the skill after edit
+4. Create a memory snapshot before editing (rollback safety)
+5. Verify the edit succeeded (re-read file, confirm =new-text= appears)
+6. Return success/failure with a diff summary
+
+*** Self-fix (error diagnosis and repair)
+1. Accept (=skill-name=, =error-log=) and diagnose the failure
+2. Parse the error log for: syntax errors (unmatched parens, invalid forms),
+   undefined symbol references, semantic issues (prohibited forms)
+3. For syntax errors: locate the problematic region, propose a correction
+   using structural Lisp knowledge
+4. For undefined references: check if the symbol exists in another package,
+   if the skill's =#+DEPENDS_ON:= declaration is missing a dependency
+5. For semantic issues: identify the prohibited operation and suggest alternatives
+6. Invoke =self-improve-edit= to apply the fix
+7. After repair, run the skill's tests if they exist; if tests pass, hot-reload
+
+*** Implementation approach
+- Add an actual =:trigger= function that activates on =:ERROR= or =:STUCK= signal types
+- =self-improve-edit=: use =uiop:read-file-string=, string replacement with
+  =ppcre:regex-replace= or substring operations, write back with =with-open-file=
+- =self-improve-fix=: add structural analysis in =programming-lisp.lisp= for error parsing
+- Leverage the REPL skill for verification after repair (call =lisp-eval= on the fixed code block)
+
+** Dependencies**: =programming-lisp= (lisp-structural-check), =programming-org= (tangling),
+=core-memory= (snapshot-memory), =core-skills= (jailed reload)
+
+** Verification**: FiveAM test that creates a file with known content, calls self-improve-edit,
+and asserts the replacement was applied. Second test with a file containing a
+deliberate error, calls self-improve-fix, and asserts the error was corrected.
+
+* P1: system-event-orchestrator — Bootstrap Implementation
+
+** Claimed status**: v0.3.0 partially DONE ("hook-registry + cron-registry + tier classifier")
+
+** Actual state**: Hook/cron registries, tier dispatching, and heartbeat integration work.
+But =orchestrator-bootstrap= is a stub: =(log-message "ORCHESTRATOR: Bootstrap complete")=
+
+** What it should do**:
+
+1. Scan the Memex =projects/= and =notes/= directories for Org files containing =#+HOOK:= properties
+2. For each =#+HOOK:= property found, call =orchestrator-register-hook= with
+   the hook name and a gate function
+3. For files with =#+CRON:= properties (or cron expressions in timestamps),
+   register them via =orchestrator-register-cron=
+4. Log the count of registered hooks and cron jobs at completion
+5. Run bootstrap once at startup (after memory is loaded but before cognitive loop begins)
+
+*** Implementation approach
+- Use =uiop:directory-files= with glob patterns for =*.org= files
+- Use =org-element= from Emacs (via =emacs-bridge= or =org-eval= skill) for parsing,
+  or implement a simple regex-based Org property parser in Lisp
+- Walk each file's headlines, extract property drawers, filter for =HOOK:= and =CRON:= keys
+- Call existing =orchestrator-register-hook= / =orchestrator-register-cron=
+
+** Dependencies**: =programming-org= (Org file parsing), file system access
+
+** Verification**: Create a test Org file with =#+HOOK: on-write=, run bootstrap,
+assert the hook registry contains the expected entry.
+
+* P1: system-memory — Memory Introspection
+
+** Claimed status**: Skill exists but was never part of a version milestone.
+
+** Actual state**: =memory-inspect= is a no-op: =(log-message "MEMORY: Self-inspection triggered.")=
+The =:trigger= is =nil= so the skill never activates.
+
+** What it should do**:
+
+1. Return a structured report of memory state:
+   - Total objects in =*memory-store*=
+   - Distribution by type (=:HEADLINE=, =:PARAGRAPH=, etc.)
+   - Distribution by =:TODO-STATE= (=TODO=, =NEXT=, =DONE=, etc.)
+   - Count of privacy-filtered objects
+   - Most recent objects (by =:version= timestamp)
+   - Current snapshot count and timestamps
+   - Orphaned objects (parent-id references a deleted ID)
+2. Accept an optional filter to narrow the report (by type, by tag, by time range)
+3. Wire the trigger to activate on =:INTROSPECTION= signal type or =/memory= commands
+
+*** Implementation approach
+- Iterate =*memory-store*= with =maphash=, collect statistics
+- Add to skill trigger: =(eq (getf (getf ctx :payload) :sensor) :introspection)=
+- Return results as a plist that can be rendered in the TUI
+
+** Dependencies**: =core-memory= (memory-store and memory-object struct)
+
+** Verification**: Ingest known objects, call memory-inspect, assert type counts and
+object counts match.
+
+* P2: core-context — Semantic Retrieval (Embeddings)
+
+** Claimed status**: The foveal-peripheral model is implemented and tested, but the
+embedding pipeline that feeds it is listed as TODO for v0.3.0.
+
+** Actual state**: The context rendering code (=context-object-render=) computes
+=cosine-similarity= correctly, but =org-object-vector= is never populated.
+All objects have =nil= vectors, all similarities are =0.0=, and the model
+falls back to "include everything within depth 2." This is functionally
+equivalent to no retrieval at all.
+
+** What it should do**:
+
+1. Add a =populate-vector= function to =core-memory= that calls an embedding
+   provider and stores the result in the =memory-object= =:vector= slot
+2. At ingest time (=ingest-ast=), generate embeddings for new objects
+3. Embedding provider options (in priority order):
+   - Ollama (local, =nomic-embed-text= or =mxbai-embed-large=)
+   - OpenAI-compatible embedding API (=text-embedding-3-small=)
+   - Fallback: TF-IDF bag-of-words vector (no external dependency)
+4. Updates: when =memory-object= content changes, mark =:vector= as =:pending=
+   and process in a background batch via the event orchestrator
+5. Add an environment variable =EMBEDDING_PROVIDER= with default =ollama=
+
+*** Implementation approach
+- Add an =:embedding-provider= function stored in =*config*=
+- =embed-object=: take content string → call provider → store float vector
+- Modify =ingest-ast= to call =embed-object= on each new object
+- Add batch processing in =system-event-orchestrator= for vector updates
+- Use =bordeaux-threads= with a lock for async embedding generation
+
+** Dependencies**: External embedding provider (Ollama or API), =core-memory= (vector slot)
+
+** Verification**: Create objects with content, run embedding pipeline, assert vectors
+are non-nil and have the correct dimensionality. Verify that =cosine-similarity=
+between semantically similar objects exceeds 0.75 threshold.
+
+* P2: core-context — Subtree-Based Skill Source Loading
+
+** Claimed status**: DESIGN_DECISIONS §"Org-Mode as Unified AST" describes: "When the
+agent needs information about the =openctl-db= function, it queries for the
+=openctl-db= subtree specifically."
+
+** Actual state**: =context-skill-source= reads the ENTIRE Org file as a string via
+=uiop:read-file-string=. No subtree query exists.
+
+** What it should do**:
+
+1. Add a =context-skill-subtree= function that takes (=skill-name=, =heading-name=)
+   and returns only the content under that headline
+2. Add a =context-skill-function-signature= function that returns only the function
+   name, lambda list, and docstring
+3. Add a =context-skill-tests= function that returns only test blocks
+4. Modify =context-skill-source= to optionally accept a =:subtree= keyword argument
+5. If the Org file has an Org-element parser available, use it for structural queries;
+   otherwise fall back to regex-based headline matching
+
+*** Implementation approach
+- Use =org-element= via =org-eval= skill (REPL bridge to Emacs) if available
+- Lisp-native fallback: parse Org headlines with regex (=^*+ = pattern),
+   match heading name by string comparison, extract content until next
+   headline of equal or higher level
+- Cache parsed results to avoid re-parsing on repeated queries
+
+** Dependencies**: =programming-org= (Org parsing utilities), =emacs-bridge= (if Emacs
+Org-element is preferred)
+
+** Verification**: Create a test Org file with multiple headlines, query for a specific
+subtree, assert only that subtree's content is returned.
+
+* Priority and Sequencing
+
+The remediation should proceed in this order:
+
+1. **system-event-orchestrator bootstrap** (P1) — needed as infrastructure for Scribe/Gardener cron scheduling
+2. **system-archivist** (P0) — depends on orchestrator for cron scheduling
+3. **system-self-improve** (P0) — independent, can proceed in parallel with #2
+4. **core-context embeddings** (P2) — independent, unlocks semantic retrieval
+5. **core-context subtree loading** (P2) — independent, improves context efficiency
+6. **system-memory inspect** (P1) — lowest priority, nice-to-have introspection
+
+P0 items must be completed before v0.3.0 development begins. P1 items should be
+completed before v0.3.0 is released. P2 items can extend into early v0.3.0.
+
+* Out of Scope
+
+Features listed as TODO in the ROADMAP for v0.3.0+ are NOT in this remediation
+plan. Specifically excluded:
+
+- HITL continuation-based suspension (v0.3.0 TODO)
+- Model-tier routing / cost optimization (v0.3.0 TODO)
+- Memory scope segmentation (v0.3.0 TODO)
+- Long-horizon planning / task trees (v0.4.0 TODO)
+- Shadow simulation mode (not on roadmap, aspirational)
+- Formal verification of dispatcher rules (not on roadmap, aspirational)
+- Bouncer rule learning from HITL decisions (not on roadmap, aspirational)

harness/act.lisp

@@ -1,313 +0,0 @@
-(in-package :opencortex)
-
-(defvar *default-actuator* :cli
-  "The actuator used when no explicit target is specified.
-  Override with DEFAULT_ACTUATOR environment variable.")
-
-(defvar *silent-actuators* '(:cli :system-message :emacs)
-  "List of actuators that don't generate tool-output feedback.
-  These typically have their own feedback mechanisms (CLI prints directly, etc.)")
-
-(defun initialize-actuators ()
-  "Load actuator configuration from environment and register core actuators.
-
-  Environment variables:
-  - DEFAULT_ACTUATOR: Keyword for default target (:cli, :shell, etc.)
-  - SILENT_ACTUATORS: Comma-separated list of actuators that skip feedback
-
-  Registers three core actuators:
-  1. :system - Internal commands (eval, create-skill, message)
-  2. :tool - Cognitive tool execution
-  3. :tui - Terminal UI output via reply stream"
-
-  ;; Load environment configuration
-  (let ((def (uiop:getenv "DEFAULT_ACTUATOR"))
-        (silent (uiop:getenv "SILENT_ACTUATORS")))
-
-    ;; Set default actuator
-    (when def
-      (setf *default-actuator*
-            (intern (string-upcase def) "KEYWORD")))
-
-    ;; Parse silent actuators list
-    (when silent
-      (setf *silent-actuators*
-            (mapcar (lambda (s)
-                      (intern (string-upcase (string-trim '(#\Space) s))
-                             "KEYWORD"))
-                    (str:split "," silent)))))
-
-  ;; Register core harness actuators
-  (register-actuator :system #'execute-system-action)
-  (register-actuator :tool #'execute-tool-action)
-
-  ;; TUI actuator: sends response back through the reply stream
-  (register-actuator :tui (lambda (action context)
-                            (let* ((meta (getf context :meta))
-                                   (stream (getf meta :reply-stream)))
-                              (when (and stream (open-stream-p stream))
-                                (format stream "~a" (frame-message action))
-                                (finish-output stream))))))
-
-(defun dispatch-action (action context)
-  "Route an approved action to its registered actuator.
-
-  ACTION is a plist with structure:
-    (:TYPE :REQUEST :TARGET :shell :PAYLOAD (...))
-
-  CONTEXT is the signal being processed (for metadata access)
-
-  The target is resolved in order of priority:
-  1. Explicit :target in the action
-  2. :source from the original signal's metadata
-  3. *default-actuator* configuration variable
-
-  Returns the actuator's result (may be a feedback signal or NIL)."
-
-  (let ((payload (proto-get action :payload)))
-
-    ;; Heartbeats don't generate actuation
-    (when (eq (proto-get payload :sensor) :heartbeat)
-      (return-from dispatch-action nil))
-
-    (when (and action (listp action))
-      (let* ((meta (proto-get context :meta))
-             (source (proto-get meta :source))
-             (raw-target (or (ignore-errors (getf action :TARGET))
-                            (ignore-errors (getf action :target))
-                            source
-                            *default-actuator*))
-             (target (intern (string-upcase (string raw-target)) :keyword))
-             (actuator-fn (gethash target *actuator-registry*)))
-
-        ;; Preserve metadata in outbound action
-        (when (and meta (null (getf action :meta)))
-          (setf (getf action :meta) meta))
-
-        ;; Execute or log error
-        (if actuator-fn
-            (funcall actuator-fn action context)
-            (harness-log "ACT ERROR: No actuator registered for '~s' (requested by ~s)"
-                         target raw-target))))))
-
-(defun execute-system-action (action context)
-  "Execute internal harness commands.
-
-  This actuator handles meta-commands that affect the harness itself,
-  rather than external side effects. Commands include:
-
-  - :eval - Evaluate arbitrary Lisp code (DANGEROUS, validate first!)
-  - :create-skill - Write a new skill org file and reload
-  - :message - Log a message to the harness log
-
-  These commands bypass the normal actuator system since they operate
-  on the harness internals rather than external systems."
-
-  (declare (ignore context))
-
-  (let* ((payload (ignore-errors (getf action :payload)))
-         (cmd (ignore-errors (getf payload :action))))
-
-    (case cmd
-      ;; Evaluate Lisp code - guarded by lisp-utils skill
-      (:eval
-       (let ((code (getf payload :code)))
-         (eval (read-from-string code))))
-
-      ;; Create and load a new skill from content
-      (:create-skill
-       (let* ((filename (getf payload :filename))
-              (content (getf payload :content))
-              (skills-dir (merge-pathnames "skills/"
-                                          (asdf:system-source-directory :opencortex)))
-              (full-path (merge-pathnames filename skills-dir)))
-         (with-open-file (out full-path
-                             :direction :output
-                             :if-exists :supersede)
-           (write-string content out))
-         (load-skill-from-org full-path)))
-
-      ;; Log an informational message
-      (:message
-       (harness-log "ACT [System]: ~a" (getf payload :text)))
-
-      ;; Unknown command
-      (t
-       (harness-log "ACT ERROR [System]: Unknown command '~s'" cmd)))))
-
-(defun execute-tool-action (action context)
-  "Execute a registered cognitive tool.
-
-  Tools are registered functions with:
-  - A guard function (optional, for safety checks)
-  - A body function (the actual implementation)
-  - Metadata (description, parameter specs)
-
-  This actuator:
-  1. Looks up the tool by name
-  2. Runs the guard function (if present)
-  3. Executes the body function with parsed arguments
-  4. Returns a feedback signal with the result
-
-  The feedback mechanism allows tool results to trigger further reasoning."
-
-  (let* ((payload (getf action :payload))
-         (tool-name (getf payload :tool))
-         (tool-args (getf payload :args))
-         (depth (getf context :depth 0))
-         (meta (getf context :meta))
-         (source (getf meta :source))
-         (tool (gethash (string-downcase (string tool-name)) *cognitive-tools*)))
-
-    (if tool
-        (handler-case
-            ;; Parse arguments (handle both flat and nested plists)
-            (let* ((clean-args (if (and (listp tool-args)
-                                      (listp (car tool-args)))
-                                 (car tool-args)
-                                 tool-args))
-                   (result (funcall (cognitive-tool-body tool) clean-args)))
-
-              ;; Format result for source
-              (when source
-                (dispatch-action (list :TYPE :REQUEST
-                                     :TARGET source
-                                     :PAYLOAD (list :ACTION :MESSAGE
-                                                  :TEXT (format-tool-result tool-name result)))
-                              context))
-
-              ;; Return feedback signal for potential further processing
-              (list :TYPE :EVENT
-                    :DEPTH (1+ depth)
-                    :META meta
-                    :PAYLOAD (list :SENSOR :tool-output
-                                 :RESULT result
-                                 :TOOL tool-name)))
-
-          ;; Tool execution error
-          (error (c)
-            (list :TYPE :EVENT
-                  :DEPTH (1+ depth)
-                  :META meta
-                  :PAYLOAD (list :SENSOR :tool-error
-                               :TOOL tool-name
-                               :MESSAGE (format nil "~a" c)))))
-
-        ;; Tool not found
-        (list :TYPE :EVENT
-              :DEPTH (1+ depth)
-              :META meta
-              :PAYLOAD (list :SENSOR :tool-error
-                            :MESSAGE (format nil "Tool '~a' not found" tool-name))))))
-
-(defun format-tool-result (tool-name result)
-  "Format a tool result for human-readable display.
-
-  Tools return either:
-  - A plist: (:status :success :content \"...\") or (:status :error :message \"...\")
-  - A raw value (string, number, etc.)
-
-  This function normalizes both formats into a consistent string presentation."
-
-  (if (listp result)
-      (let ((status (getf result :status))
-            (content (getf result :content))
-            (msg (getf result :message)))
-        (cond
-          ((and (eq status :success) content)
-           (format nil "~a" content))
-          ((and (eq status :error) msg)
-           (format nil "ERROR [~a]: ~a" tool-name msg))
-          (t
-           (format nil "TOOL [~a] RESULT: ~s" tool-name result))))
-      (format nil "TOOL [~a] RESULT: ~a" tool-name result)))
-
-(defun act-gate (signal)
-  "Final stage of the metabolic pipeline: Actuation.
-
-  This stage has three responsibilities:
-
-  1. Last-mile safety check: Run deterministic gates one more time
-     before execution (handles race conditions, concurrent modifications)
-
-  2. Actuation: Dispatch the approved action to its target actuator
-
-  3. Feedback generation: If the action produced results, create a
-     feedback signal that feeds back into the pipeline
-
-  Modifies the signal:
-  - :approved-action - May be modified by last-mile verification
-  - :status - Set to :acted
-
-  Returns a feedback signal if the action produced results, otherwise NIL."
-
-  (let* ((approved (getf signal :approved-action))
-         (type (getf signal :type))
-         (meta (getf signal :meta))
-         (source (getf meta :source))
-         (feedback nil)
-         (context signal))
-
-    ;; Step 1: Last-mile deterministic verification
-    ;; This catches any issues that arose between reasoning and acting
-    (when approved
-      (let* ((original-type (getf approved :type))
-             (verified (deterministic-verify approved signal)))
-
-        ;; Check if deterministic verification blocked the action
-        (if (and (listp verified)
-                 (member (getf verified :type) '(:LOG :EVENT :log :event))
-                 (not (member original-type '(:LOG :EVENT :log :event))))
-
-            ;; Action was blocked by verification
-            (progn
-              (harness-log "ACT BLOCKED: Action failed last-mile deterministic check.")
-              (setf (getf signal :approved-action) nil)
-              (setf approved nil)
-              (setf feedback verified))
-
-            ;; Action passed verification
-            (progn
-              (setf (getf signal :approved-action) verified)
-              (setf approved verified)))))
-
-    ;; Step 2: Actuation based on signal type
-    (case type
-      ;; Explicit requests go directly to dispatch
-      (:REQUEST
-       (dispatch-action signal context))
-
-      ;; Log messages also dispatch
-      (:LOG
-       (dispatch-action signal context))
-
-      ;; Events with approved actions dispatch to their target
-      (:EVENT
-       (if approved
-           (let* ((target (getf approved :target))
-                  (result (dispatch-action approved context)))
-
-             ;; Determine feedback based on actuator response
-             (cond
-               ;; Actuator returned a signal - use it as feedback
-               ((and (listp result)
-                     (member (getf result :type) '(:EVENT :LOG)))
-                (setf feedback result))
-
-               ;; Non-silent actuator with result - format as tool-output
-               ((and result
-                     (not (member target *silent-actuators*)))
-                (setf feedback (list :type :EVENT
-                                    :depth (1+ (getf signal :depth 0))
-                                    :meta meta
-                                    :payload (list :sensor :tool-output
-                                                 :result result
-                                                 :tool approved))))))
-
-           ;; No approved action, but have source - might be raw event
-           (when source
-             (dispatch-action signal context)))))
-
-    ;; Step 3: Update signal status
-    (setf (getf signal :status) :acted)
-    feedback))

harness/communication-validator.lisp

@@ -1,44 +0,0 @@
-(in-package :opencortex)
-
-(defun validate-communication-protocol-schema (msg)
-  "Strict structural validation for incoming communication protocol messages."
-  (unless (listp msg)
-    (error "Communication Protocol Schema Error: Message must be a property list (got ~s)" (type-of msg)))
-  
-  (let ((type (let ((raw (proto-get msg :type))) (if (keywordp raw) (intern (string-upcase (string raw)) :keyword) raw))))
-    (unless (member type '(:REQUEST :EVENT :RESPONSE :LOG :STATUS))
-      (progn (harness-log "REJECTED MSG: ~s" msg) (error "Communication Protocol Schema Error: Invalid message type '~a'" type)))
-    
-    (case type
-      (:REQUEST 
-       ;; Allow missing :target if :source is present in :meta, since reason-gate
-       ;; will infer :target from :source downstream. This preserves "equality of
-       ;; clients" — gateways need not duplicate routing logic.
-       (let ((target (proto-get msg :target))
-             (source (proto-get (proto-get msg :meta) :source)))
-         (unless (or target source)
-           (error "Communication Protocol Schema Error: REQUEST missing mandatory :target and no :source in :meta to infer it"))
-         (unless (proto-get msg :payload)
-           (error "Communication Protocol Schema Error: REQUEST missing mandatory :payload"))))
-      
-      (:EVENT
-       (let ((payload (proto-get msg :payload)))
-         (unless (and payload (listp payload))
-           (error "Communication Protocol Schema Error: EVENT missing or invalid :payload"))
-         (unless (or (proto-get payload :action) (proto-get payload :sensor))
-           (error "Communication Protocol Schema Error: EVENT payload must contain :action or :sensor"))))
-      
-      (:RESPONSE
-       (unless (proto-get msg :payload)
-         (error "Communication Protocol Schema Error: RESPONSE missing mandatory :payload"))))
-    
-    t))
-
-(defskill :skill-communication-protocol-validator
-  :priority 95
-  :trigger (lambda (ctx) (member (getf (getf ctx :payload) :sensor) '(:protocol-received)))
-  :probabilistic nil
-  :deterministic (lambda (action ctx)
-              (declare (ignore ctx))
-              (validate-communication-protocol-schema action)
-              action))

harness/communication.lisp

@@ -1,78 +0,0 @@
-(in-package :opencortex)
-
-(defun proto-get (plist key)
-  "Robustly retrieves a value from a plist, checking both uppercase and lowercase keyword versions."
-  (let* ((s (string key))
-         (up (intern (string-upcase s) :keyword))
-         (dn (intern (string-downcase s) :keyword)))
-    (or (getf plist up) (getf plist dn))))
-
-(in-package :opencortex)
-
-(defvar *actuator-registry* (make-hash-table :test 'equalp)
-  "Global registry mapping target keywords to their physical actuator functions.")
-
-(defun register-actuator (name fn) 
-  "Registers an actuator function. Actuators receive: (ACTION CONTEXT)."
-  (let ((key (if (keywordp name) name (intern (string-upcase (string name)) :keyword))))
-    (setf (gethash key *actuator-registry*) fn)))
-
-;; Removed duplicate frame-message - kept the sanitized version below
-
-(defun read-framed-message (stream)
-  "Reads a hex-length prefixed S-expression from the stream securely. Skips leading whitespace."
-  (let ((length-buffer (make-string 6)))
-    (handler-case
-        (progn
-          ;; 1. Skip leading whitespace (newlines, spaces, etc.)
-          (loop for char = (peek-char nil stream nil :eof)
-                while (and (not (eq char :eof)) (member char '(#\Space #\Newline #\Tab #\Return)))
-                do (read-char stream))
-          
-          ;; 2. Read the 6-char hex length
-          (let ((count (read-sequence length-buffer stream)))
-            (cond ((< count 6) :eof)
-                  (t (let ((len (ignore-errors (parse-integer length-buffer :radix 16))))
-                       (if (not len)
-                           (progn
-                             (harness-log "PROTOCOL ERROR: Invalid header ~s. Attempting resync..." length-buffer)
-                             :error)
-                           (let ((msg-buffer (make-string len)))
-                             (read-sequence msg-buffer stream)
-                             (let ((*read-eval* nil)
-                                   (*print-pretty* nil))
-                               (handler-case 
-                                   (let ((msg (read-from-string msg-buffer)))
-                                     (validate-communication-protocol-schema msg)
-                                     msg)
-                                 (error (c)
-                                   (harness-log "PROTOCOL PARSE ERROR: ~a in ~s" c msg-buffer)
-                                   :error))))))))))
-      (error (c) 
-        (harness-log "PROTOCOL READ ERROR: ~a" c)
-        :error))))
-
-(defun make-hello-message (version)
-  "Constructs the standard HELLO handshake message."
-  (list :TYPE :EVENT 
-        :PAYLOAD (list :ACTION :handshake 
-                       :VERSION version 
-                       :CAPABILITIES '(:AUTH :SWANK :ORG-AST))))
-
-(defun sanitize-protocol-message (msg)
-  "Recursively strips non-serializable objects from a protocol plist."
-  (if (and msg (listp msg))
-      (let ((clean nil))
-        (loop for (k v) on msg by #'cddr
-              do (unless (member k '(:reply-stream :socket :stream))
-                   (push k clean)
-                   (push (if (listp v) (sanitize-protocol-message v) v) clean)))
-        (nreverse clean))
-      msg))
-
-(defun frame-message (msg)
-  "Serializes a message plist and prefixes it with a 6-character hex length."
-  (let* ((sanitized (sanitize-protocol-message msg))
-         (payload (let ((*print-pretty* nil) (*read-eval* nil)) (format nil "~s" sanitized)))
-         (len (length payload)))
-    (format nil "~6,'0x~a" len payload)))

harness/context.lisp

@@ -1,119 +0,0 @@
-(in-package :opencortex)
-
-(defun context-query-store (&key tag todo-state type)
-  "Filters the Memory based on tags, todo states, or types."
-  (let ((results nil))
-    (maphash (lambda (id obj)
-               (declare (ignore id))
-               (let* ((attrs (org-object-attributes obj)) (state (getf attrs :TODO-STATE)) (match t))
-                 (when (and type (not (eq (org-object-type obj) type))) (setf match nil))
-                 (when tag (unless (search tag (format nil "~a" (getf attrs :TAGS)) :test #'string-equal) (setf match nil)))
-                 (when (and todo-state (not (equal state todo-state))) (setf match nil))
-                 (when match (push obj results))))
-             *memory*)
-    results))
-
-(defun context-get-active-projects ()
-  "Returns headlines tagged as 'project' that are not yet marked DONE."
-  (remove-if (lambda (obj) (equal (getf (org-object-attributes obj) :TODO-STATE) "DONE"))
-             (context-query-store :tag "project" :type :HEADLINE)))
-
-(defun context-get-recent-completed-tasks () 
-  "Retrieves recently finished tasks from the store."
-  (context-query-store :todo-state "DONE" :type :HEADLINE))
-
-(defun context-list-all-skills ()
-  "Provides a sorted overview of currently loaded system capabilities."
-  (let ((results nil))
-    (maphash (lambda (name skill)
-               (declare (ignore name))
-               (push (list :name (skill-name skill) :priority (skill-priority skill) :dependencies (skill-dependencies skill)) results))
-             *skills-registry*)
-    (sort results #'> :key (lambda (x) (getf x :priority)))))
-
-(defun context-get-skill-source (skill-name)
-  "Reads the raw literate source of a specific skill for inspection."
-  (let* ((filename (format nil "~a.org" skill-name))
-         (skills-dir-str (or (uiop:getenv "SKILLS_DIR") (namestring (merge-pathnames "notes/" (user-homedir-pathname)))))
-         (skills-dir (uiop:ensure-directory-pathname (context-resolve-path skills-dir-str)))
-         (full-path (merge-pathnames filename skills-dir)))
-    (if (uiop:file-exists-p full-path) (uiop:read-file-string full-path) nil)))
-
-(defun context-get-system-logs (&optional limit)
-  "Retrieves the most recent lines from the harness's internal log."
-  (let ((log-limit (or limit (ignore-errors (parse-integer (uiop:getenv "CONTEXT_LOG_LIMIT"))) 20)))
-    (bt:with-lock-held (*logs-lock*)
-      (let ((count (min log-limit (length *system-logs*)))) 
-        (subseq *system-logs* 0 count)))))
-
-(defun context-render-to-org (obj &key (depth 1) (foveal-id nil) semantic-threshold (foveal-vector nil))
-  "Recursively renders an org-object and its children to an Org string using a Foveal-Peripheral Hybrid model."
-  (let* ((id (org-object-id obj))
-         (is-foveal (equal id foveal-id))
-         (title (or (getf (org-object-attributes obj) :TITLE) "Untitled"))
-         (content (org-object-content obj))
-         (children (org-object-children obj))
-         (stars (make-string depth :initial-element #\*))
-         (obj-vector (org-object-vector obj))
-         (threshold (or semantic-threshold (ignore-errors (read-from-string (uiop:getenv "CONTEXT_SEMANTIC_THRESHOLD"))) 0.75))
-         (similarity (if (and foveal-vector obj-vector (not is-foveal))
-                         (cosine-similarity foveal-vector obj-vector)
-                         0.0))
-         (is-semantically-relevant (>= similarity threshold))
-         ;; We always render depth 1 and 2 (Projects and main tasks).
-         ;; We always render the foveal node and its immediate children.
-         ;; We render deeper nodes ONLY if they are semantically relevant.
-         (should-render (or (<= depth 2) is-foveal is-semantically-relevant))
-         (output ""))
-    
-    (when should-render
-      (setf output (format nil "~a ~a~%:PROPERTIES:~%:ID: ~a~%" stars title id))
-      (when is-semantically-relevant
-        (setf output (concatenate 'string output (format nil ":SEMANTIC_SCORE: ~,2f~%" similarity))))
-      (setf output (concatenate 'string output (format nil ":END:~%")))
-      
-      ;; Only include full body content if this is the Foveal focus or highly relevant
-      (when (and content (or is-foveal is-semantically-relevant))
-        (setf output (concatenate 'string output content (string #\Newline))))
-      
-      ;; Recursively render children
-      (dolist (child-id children)
-        (let ((child-obj (lookup-object child-id)))
-          (when child-obj
-            ;; If the current node is Foveal, its children should be rendered (depth effectively resets)
-            (let ((next-foveal (if is-foveal child-id foveal-id)))
-              (setf output (concatenate 'string output 
-                                        (context-render-to-org child-obj 
-                                                               :depth (1+ depth) 
-                                                               :foveal-id next-foveal
-                                                               :semantic-threshold threshold
-                                                               :foveal-vector foveal-vector))))))))
-    output))
-
-(defun context-resolve-path (path-string)
-  "Expands environment variables and strips literal quotes from a path string."
-  (let ((path (if (stringp path-string) 
-                  (string-trim '(#\" #\' #\Space) path-string)
-                  path-string)))
-    (if (and (stringp path) (search "$" path))
-        (let ((result path))
-          (ppcre:do-register-groups (var-name) ("\\$([A-Za-z0-9_]+)" path)
-            (let ((var-val (uiop:getenv var-name)))
-              (when var-val
-                (setf result (ppcre:regex-replace (format nil "\\$~a" var-name) result var-val)))))
-          result)
-        path)))
-
-(defun context-assemble-global-awareness (&optional signal)
-  "Produces a high-level skeletal outline of the current Memory for the LLM."
-  (let* ((foveal-id (or (getf signal :foveal-focus) 
-                        (ignore-errors (getf (getf signal :payload) :target-id))))
-         (projects (context-get-active-projects))
-         (output "GLOBAL MEMEX AWARENESS (Peripheral Vision):
-"))
-    (if projects
-        (dolist (project projects)
-          (setf output (concatenate 'string output
-                                    (context-render-to-org project :foveal-id foveal-id))))
-        (setf output (concatenate 'string output "No active projects found.~%")))
-    output))

harness/doctor.lisp

@@ -1,80 +0,0 @@
-(in-package :opencortex)
-
-(defvar *doctor-required-binaries* '("sbcl" "emacs" "git" "socat" "nc")
-  "List of external binaries required for full system operation.")
-
-(defun doctor-check-dependencies ()
-  "Verifies that required external binaries are available in the PATH via a shell probe."
-  (let ((all-ok t))
-    (harness-log "DOCTOR: Checking system dependencies...")
-    (dolist (dep *doctor-required-binaries*)
-      (let ((path (ignore-errors 
-                    (uiop:run-program (list "which" dep) 
-                                      :output :string :ignore-error-status t))))
-        (if (and path (> (length path) 0))
-            (harness-log "  [OK] Found ~a" dep)
-            (progn
-              (harness-log "  [FAIL] Missing binary: ~a" dep)
-              (setf all-ok nil)))))
-    all-ok))
-
-(defun doctor-check-env ()
-  "Validates XDG directories and environment configuration against the POSIX standard."
-  (harness-log "DOCTOR: Checking XDG environment...")
-  (let ((all-ok t)
-        (config-dir (uiop:getenv "OC_CONFIG_DIR"))
-        (data-dir (uiop:getenv "OC_DATA_DIR"))
-        (state-dir (uiop:getenv "OC_STATE_DIR"))
-        (memex-dir (uiop:getenv "MEMEX_DIR")))
-    
-    (flet ((check-dir (name path critical)
-             (if (and path (> (length path) 0))
-                 (if (uiop:directory-exists-p path)
-                     (harness-log "  [OK] ~a: ~a" name path)
-                     (progn
-                       (harness-log "  [FAIL] ~a directory missing: ~a" name path)
-                       (when critical (setf all-ok nil))))
-                 (progn
-                   (harness-log "  [FAIL] ~a variable not set." name)
-                   (when critical (setf all-ok nil))))))
-
-      (check-dir "Config (OC_CONFIG_DIR)" config-dir t)
-      (check-dir "Data (OC_DATA_DIR)" data-dir t)
-      (check-dir "State (OC_STATE_DIR)" state-dir t)
-      (check-dir "Memex (MEMEX_DIR)" memex-dir t))
-    all-ok))
-
-(defun doctor-check-llm ()
-  "Tests connectivity to primary LLM providers. Non-critical fallback allowed."
-  (harness-log "DOCTOR: Checking LLM connectivity...")
-  (let ((openrouter-key (uiop:getenv "OPENROUTER_API_KEY")))
-    (if (and openrouter-key (> (length openrouter-key) 0))
-        (progn
-          (harness-log "  [OK] OpenRouter API Key detected.")
-          t)
-        (progn
-          (harness-log "  [WARN] No OpenRouter API Key. Falling back to local inference only.")
-          t))))
-
-(defun doctor-run-all ()
-  "Executes the full diagnostic suite and returns T if system is healthy."
-  (harness-log "==================================================")
-  (harness-log " OPENCORTEX DOCTOR: Commencing Health Check")
-  (harness-log "==================================================")
-  (let ((dep-ok (doctor-check-dependencies))
-        (env-ok (doctor-check-env))
-        (llm-ok (doctor-check-llm)))
-    (harness-log "==================================================")
-    (if (and dep-ok env-ok)
-        (progn
-          (harness-log " ✓ SYSTEM HEALTHY: Ready for ignition.")
-          t)
-        (progn
-          (harness-log " ✗ SYSTEM UNHEALTHY: Fix the errors above.")
-          nil))))
-
-(defun doctor-main ()
-  "Entry point for the 'doctor' CLI command."
-  (if (doctor-run-all)
-      (uiop:quit 0)
-      (uiop:quit 1)))

harness/doctor.org

@@ -1,169 +0,0 @@
-#+PROPERTY: header-args:lisp :tangle doctor.lisp
-#+TITLE: System Diagnostic Doctor (doctor.org)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:setup:diagnostic:
-#+STARTUP: content
-
-* Overview
-The *System Doctor* is the primary diagnostic utility for the OpenCortex. Its purpose is to transform opaque startup failures into actionable engineering reports. 
-
-By centralizing environment validation, we ensure that the "Brain" never attempts to boot in a compromised or incomplete state.
-
-* Phase A: Demand (Thinking)
-** The XDG Standard Rationale
-To ensure OpenCortex behaves as a first-class POSIX citizen, we adopt the **XDG Base Directory Specification**. This separates the system into four logical layers:
-
-1. **Configuration (`~/.config/opencortex`)**: User-editable settings and secrets.
-2. **Data (`~/.local/share/opencortex`)**: Tangled Lisp engine artifacts (immutable by user).
-3. **State (`~/.local/state/opencortex`)**: Dynamic persistence like brain snapshots.
-4. **Bin (`~/.local/bin`)**: The CLI shim for global invocation.
-
-** The Detection Invariant: Shell Probing
-Common Lisp's `getenv` is strictly typed in SBCL. The Doctor must ensure that missing variables are handled as logic failures, not type crashes. Furthermore, binary detection must use a shell probe (`command -v` or `which`) to account for varying `$PATH` inheritance between interactive and headless sessions.
-
-* Phase B: Protocol (Success Criteria)
-
-** Package Context
-#+begin_src lisp :tangle doctor.lisp (concat (concat (or (getenv "INSTALL_DIR ". "/harness "/tests)
-(defpackage :opencortex-doctor-tests
-  (:use :cl :fiveam :opencortex)
-  (:export #:doctor-suite))
-#+end_src
-
-#+begin_src lisp :tangle doctor.lisp (concat (concat (or (getenv "INSTALL_DIR ". "/harness "/tests)
-(in-package :opencortex-doctor-tests)
-#+end_src
-
-#+begin_src lisp :tangle doctor.lisp (concat (concat (or (getenv "INSTALL_DIR ". "/harness "/tests)
-(def-suite doctor-suite :description "Verification of the System Doctor diagnostic logic
-#+end_src
-
-#+begin_src lisp :tangle doctor.lisp (concat (concat (or (getenv "INSTALL_DIR ". "/harness "/tests)
-(in-suite doctor-suite)
-#+end_src
-
-** Dependency Tests
-#+begin_src lisp :tangle doctor.lisp (concat (concat (or (getenv "INSTALL_DIR ". "/harness "/tests)
-(test test-dependency-check-fail
-  "Verify that missing binaries are correctly identified as failures."
-  (let ((opencortex::*doctor-required-binaries* '("non-existent-binary-123))
-    (is (null (opencortex:doctor-check-dependencies)))))
-#+end_src
-
-** Environment Tests
-#+begin_src lisp :tangle doctor.lisp (concat (concat (or (getenv "INSTALL_DIR ". "/harness "/tests)
-(test test-env-validation-fail
-  "Verify that an invalid MEMEX_DIR triggers a critical failure."
-  (let ((old-m (getenv "MEMEX_DIR)
-        (old-s (getenv "SKILLS_DIR))
-    (unwind-protect
-         (progn
-           (setf (getenv "MEMEX_DIR "/non/existent/path/999
-           (is (null (opencortex:doctor-check-env))))
-      (setf (getenv "MEMEX_DIR (or old-m 
-      (setf (getenv "SKILLS_DIR (or old-s )))
-#+end_src
-
-* Phase C: Implementation (Build)
-
-** Package Context
-#+begin_src lisp :tangle doctor.lisp )
-(in-package :opencortex)
-#+end_src
-
-** Global Configuration
-#+begin_src lisp :tangle doctor.lisp )
-(defvar *doctor-required-binaries* '("sbcl" "emacs" "git" "socat" "nc
-  "List of external binaries required for full system operation.
-#+end_src
-
-** Dependency Verification
-#+begin_src lisp :tangle doctor.lisp )
-(defun doctor-check-dependencies ()
-  "Verifies that required external binaries are available in the PATH via a shell probe."
-  (let ((all-ok t))
-    (harness-log "DOCTOR: Checking system dependencies...
-    (dolist (dep *doctor-required-binaries*)
-      (let ((path (ignore-errors 
-                    (uiop:run-program (list "which" dep) 
-                                      :output :string :ignore-error-status t))))
-        (if (and path (> (length path) 0))
-            (harness-log "  [OK] Found ~a" dep)
-            (progn
-              (harness-log "  [FAIL] Missing binary: ~a" dep)
-              (setf all-ok nil)))))
-    all-ok))
-#+end_src
-
-** Environment & XDG Validation
-#+begin_src lisp :tangle doctor.lisp )
-(defun doctor-check-env ()
-  "Validates XDG directories and environment configuration against the POSIX standard."
-  (harness-log "DOCTOR: Checking XDG environment...
-  (let ((all-ok t)
-        (config-dir (getenv "OC_CONFIG_DIR)
-        (data-dir (getenv "OC_DATA_DIR)
-        (state-dir (getenv "OC_STATE_DIR)
-        (memex-dir (getenv "MEMEX_DIR))
-    
-    (flet ((check-dir (name path critical)
-             (if (and path (> (length path) 0))
-                 (if (uiop:directory-exists-p path)
-                     (harness-log "  [OK] ~a: ~a" name path)
-                     (progn
-                       (harness-log "  [FAIL] ~a directory missing: ~a" name path)
-                       (when critical (setf all-ok nil))))
-                 (progn
-                   (harness-log "  [FAIL] ~a variable not set." name)
-                   (when critical (setf all-ok nil))))))
-
-      (check-dir "Config (OC_CONFIG_DIR)" config-dir t)
-      (check-dir "Data (OC_DATA_DIR)" data-dir t)
-      (check-dir "State (OC_STATE_DIR)" state-dir t)
-      (check-dir "Memex (MEMEX_DIR)" memex-dir t))
-    all-ok))
-#+end_src
-
-** LLM Connectivity
-#+begin_src lisp :tangle doctor.lisp )
-(defun doctor-check-llm ()
-  "Tests connectivity to primary LLM providers. Non-critical fallback allowed."
-  (harness-log "DOCTOR: Checking LLM connectivity...
-  (let ((openrouter-key (getenv "OPENROUTER_API_KEY))
-    (if (and openrouter-key (> (length openrouter-key) 0))
-        (progn
-          (harness-log "  [OK] OpenRouter API Key detected.
-          t)
-        (progn
-          (harness-log "  [WARN] No OpenRouter API Key. Falling back to local inference only.
-          t))))
-#+end_src
-
-** Orchestration
-#+begin_src lisp :tangle doctor.lisp )
-(defun doctor-run-all ()
-  "Executes the full diagnostic suite and returns T if system is healthy."
-  (harness-log "==================================================
-  (harness-log " OPENCORTEX DOCTOR: Commencing Health Check
-  (harness-log "==================================================
-  (let ((dep-ok (doctor-check-dependencies))
-        (env-ok (doctor-check-env))
-        (llm-ok (doctor-check-llm)))
-    (harness-log "==================================================
-    (if (and dep-ok env-ok)
-        (progn
-          (harness-log " ✓ SYSTEM HEALTHY: Ready for ignition.
-          t)
-        (progn
-          (harness-log " ✗ SYSTEM UNHEALTHY: Fix the errors above.
-          nil))))
-#+end_src
-
-** CLI Entry Point
-#+begin_src lisp :tangle doctor.lisp )
-(defun doctor-main ()
-  "Entry point for the 'doctor' CLI command."
-  (if (doctor-run-all)
-      (uiop:quit 0)
-      (uiop:quit 1)))
-#+end_src

harness/loop.lisp

@@ -1,193 +0,0 @@
-(in-package :opencortex)
-
-(defvar *interrupt-flag* nil
-  "Atomic flag set by signal handlers to trigger graceful shutdown.
-  Using a dedicated variable avoids race conditions in interrupt handling.")
-
-(defvar *interrupt-lock* (bt:make-lock "harness-interrupt-lock")
-  "Mutex protecting *interrupt-flag* access.
-  Locking is required because SBCL's interrupt handlers run in uncertain contexts.")
-
-(defvar *heartbeat-thread* nil
-  "Handle to the heartbeat thread, allowing explicit termination on shutdown.")
-
-(defun process-signal (signal)
-  "The entry point to the Metabolic Pipeline: Perceive -> Reason -> Act.
-
-  SIGNAL is a property list with the following structure:
-  - :type - :EVENT, :REQUEST, :RESPONSE, etc.
-  - :payload - The actual content (sensor data, approved actions, etc.)
-  - :meta - Metadata including source, session, reply stream
-  - :depth - Recursion depth counter (starts at 0)
-  - :status - Processing status (:perceived, :reasoned, :acted)
-
-  Returns NIL when processing is complete, or a new signal for feedback loop."
-
-  (let ((current-signal signal))
-    (loop while current-signal do
-
-      ;; Depth limiting prevents infinite recursion from feedback loops
-      (let ((depth (getf current-signal :depth 0))
-            (meta (getf current-signal :meta)))
-        (when (> depth 10)
-          (harness-log "METABOLISM ERROR: Max recursion depth reached.")
-          (return nil))
-
-        ;; Check for graceful shutdown interrupt
-        (when (bt:with-lock-held (*interrupt-lock*) *interrupt-flag*)
-          (harness-log "METABOLISM: Interrupted by shutdown signal.")
-          (bt:with-lock-held (*interrupt-lock*) (setf *interrupt-flag* nil))
-          (return nil))
-
-        ;; The three-stage pipeline wrapped in error handling
-        (handler-case
-            (progn
-              ;; Stage 1: Perceive - normalize sensory input
-              (setf current-signal (perceive-gate current-signal))
-
-              ;; Stage 2: Reason - generate and verify action proposals
-              (setf current-signal (reason-gate current-signal))
-
-              ;; Stage 3: Act - execute approved actions
-              (let ((feedback (act-gate current-signal)))
-                (if feedback
-                    ;; Action generated a feedback signal - continue processing
-                    (progn
-                      ;; Preserve metadata from original signal
-                      (unless (getf feedback :meta)
-                        (setf (getf feedback :meta) meta))
-                      (setf current-signal feedback))
-                    ;; No feedback - pipeline complete
-                    (setf current-signal nil))))
-
-          ;; Error recovery with differentiated response
-          (error (c)
-            (let ((sensor (ignore-errors (getf (getf current-signal :payload) :sensor))))
-              (harness-log "METABOLISM CRASH [~a]: ~a" (or sensor :unknown) c)
-
-              ;; Only rollback memory on critical errors, not transient tool failures
-              ;; This prevents losing recent context due to a single bad API call
-              (unless (member sensor '(:loop-error :tool-error :syntax-error))
-                (harness-log "CRITICAL ERROR: Initiating Micro-Rollback.")
-                (rollback-memory 0))
-
-              ;; At deep recursion or known error types, terminate gracefully
-              (if (or (> depth 2) (member sensor '(:loop-error :tool-error)))
-                  (setf current-signal nil)
-                  ;; Otherwise, convert error to a loop-error signal for retry
-                  (setf current-signal
-                        (list :type :EVENT
-                              :depth (1+ depth)
-                              :meta meta
-                              :payload (list :sensor :loop-error
-                                           :message (format nil "~a" c)
-                                           :depth depth)))))))))))
-
-(defvar *auto-save-interval* 300
-  "Interval in seconds between automatic memory saves.
-  Defaults to 300 seconds (5 minutes). Set via MEMORY_AUTO_SAVE_INTERVAL env var.")
-
-(defvar *heartbeat-save-counter* 0
-  "Tracks heartbeats since last save, used to calculate auto-save timing.")
-
-(defun start-heartbeat ()
-  "Starts the background heartbeat thread.
-
-  The heartbeat runs in a dedicated thread to avoid blocking the main
-  signal processing loop. Each heartbeat:
-
-  1. Injects a :HEARTBEAT signal into the metabolic pipeline
-  2. Checks if memory should be auto-saved (based on interval ratio)
-
-  Configuration via environment:
-  - HEARTBEAT_INTERVAL: Seconds between heartbeats (default: 60)
-  - MEMORY_AUTO_SAVE_INTERVAL: Seconds between auto-saves (default: 300)"
-
-  (let ((interval (or (ignore-errors (parse-integer (uiop:getenv "HEARTBEAT_INTERVAL"))) 60))
-        (auto-save (or (ignore-errors (parse-integer (uiop:getenv "MEMORY_AUTO_SAVE_INTERVAL"))) *auto-save-interval*)))
-    (setf *auto-save-interval* auto-save)
-    (setf *heartbeat-save-counter* 0)
-
-    (setf *heartbeat-thread*
-          (bt:make-thread
-           (lambda ()
-             (loop
-               ;; Wait for interval
-               (sleep interval)
-
-               ;; Update counter and check if it's time to save
-               (incf *heartbeat-save-counter*)
-               (when (>= *heartbeat-save-counter* (/ *auto-save-interval* interval))
-                 (setf *heartbeat-save-counter* 0)
-                 (save-memory-to-disk))
-
-               ;; Inject heartbeat signal - this runs through the full pipeline
-               ;; allowing the agent to do latent reflection even with no input
-               (inject-stimulus
-                 (list :type :EVENT
-                       :payload (list :sensor :heartbeat
-                                    :unix-time (get-universal-time)))))
-
-            :name "opencortex-heartbeat")))))
-
-(defvar *shutdown-save-enabled* t
-  "When T, save memory to disk on graceful shutdown.
-  Disable for testing or when memory persistence is handled externally.")
-
-(defun main ()
-  "Entry point for OpenCortex. Initializes the system and enters idle loop.
-
-  Startup sequence:
-  1. Load environment from ~/.local/share/opencortex/.env
-  2. Restore memory from disk (if snapshot exists)
-  3. Initialize actuators (shell, cli, system)
-  4. Load all skills from SKILLS_DIR
-  5. Start heartbeat thread
-  6. Register SIGINT handler for graceful shutdown
-  7. Enter idle loop (sleeps in DAEMON_SLEEP_INTERVAL chunks)
-
-  The idle loop checks for interrupts and saves memory before exit."
-
-  ;; Step 1: Load environment variables from standard location
-  (let* ((home (uiop:getenv "HOME"))
-         (env-file (uiop:merge-pathnames*
-                     ".local/share/opencortex/.env"
-                     (uiop:ensure-directory-pathname home))))
-    (when (uiop:file-exists-p env-file)
-      (cl-dotenv:load-env env-file)))
-
-  ;; Step 2: Crash recovery - load memory from previous snapshot
-  (load-memory-from-disk)
-
-  ;; Step 3-4: Initialize actuators and load skills
-  (initialize-actuators)
-  (initialize-all-skills)
-
-  ;; Step 5: Start the heartbeat
-  (start-heartbeat)
-
-  ;; Step 6: Register graceful shutdown handler
-  ;; SBCL-specific: catches Ctrl+C (SIGINT) and saves before exit
-  #+sbcl
-  (sb-sys:enable-interrupt sb-unix:sigint
-                           (lambda (sig code scp)
-                             (declare (ignore sig code scp))
-                             (harness-log "SHUTDOWN: SIGINT received. Saving memory...")
-                             (when *shutdown-save-enabled*
-                               (save-memory-to-disk))
-                             (uiop:quit 0)))
-
-  ;; Step 7: Idle loop - sleep in chunks, checking for interrupts
-  (let ((sleep-interval (or (ignore-errors
-                              (parse-integer (uiop:getenv "DAEMON_SLEEP_INTERVAL")))
-                            3600)))
-    (loop
-      ;; Check for interrupt before each sleep cycle
-      (when (bt:with-lock-held (*interrupt-lock*) *interrupt-flag*)
-        (harness-log "SHUTDOWN: Interrupt flag set. Saving memory...")
-        (when *shutdown-save-enabled*
-          (save-memory-to-disk))
-        (return))
-
-      ;; Sleep in configured intervals (default: 1 hour)
-      (sleep sleep-interval))))

harness/manifest.org

@@ -1,97 +0,0 @@
-#+TITLE: System Manifest (manifest.org)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:manifest:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle opencortex.asd
-
-* Overview
-The *System Manifest* defines the structural components of the OpenCortex.
-
-* Implementation
-
-** Main System
-#+begin_src lisp
-(defsystem :opencortex
-  :name "opencortex"
-  :author "Amr Gharbeia"
-  :version "0.2.0"
-  :license "AGPLv3"
-  :description "The Probabilistic-Deterministic Lisp Machine"
-  :depends-on (:usocket :bordeaux-threads :dexador :uiop :cl-dotenv :cl-ppcre :hunchentoot :ironclad :str :cl-json :uuid)
-  :serial t
-  :components ((:file "harness/package
-               (:file "harness/skills
-               (:file "harness/communication
-               (:file "harness/communication-validator
-               (:file "harness/memory
-               (:file "harness/context
-               (:file "harness/perceive
-               (:file "harness/reason
-               (:file "harness/act
-               (:file "harness/loop))
-#+end_src
-
-** Test System
-#+begin_src lisp
-(defsystem :opencortex/tests
-  :depends-on (:opencortex :fiveam)
-  :components ((:file "tests/pipeline-act-tests
-               (:file "tests/boot-sequence-tests
-               (:file "tests/immune-system-tests
-               (:file "tests/memory-tests
-               (:file "tests/pipeline-perceive-tests
-               (:file "tests/pipeline-reason-tests
-               (:file "tests/peripheral-vision-tests
-               (:file "tests/emacs-edit-tests
-               (:file "tests/engineering-standards-tests
-               (:file "tests/lisp-utils-tests
-               (:file "tests/literate-programming-tests
-               (:file "tests/self-edit-tests
-               (:file "tests/tool-permissions-tests
-               (:file "tests/diagnostics-tests
-               (:file "tests/config-manager-tests
-               (:file "tests/gateway-manager-tests
-               (:file "tests/tui-tests
-               (:file "tests/llm-gateway-tests))
-#+end_src
-
-** TUI System
-#+begin_src lisp
-(defsystem :opencortex/tui
-  :depends-on (:opencortex :croatoan :usocket :bordeaux-threads)
-  :components ((:file "harness/tui-client))
-#+end_src
-
-** Test Orchestrator
-#+begin_src lisp :tangle opencortex.asd
-(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))
-
-(let ((oc-dir (or (uiop:getenv "OC_DATA_DIR 
-                  (namestring (truename "./))))
-  (push (uiop:ensure-directory-pathname oc-dir) asdf:*central-registry*))
-
-(ql:quickload '(:fiveam :opencortex :opencortex/tui :opencortex/tests) :silent t)
-
-(format t "~%=== Initializing Skills BEFORE loading tests ===~%
-(opencortex:initialize-all-skills)
-
-(format t "~%=== Running ALL Test Suites ===~%
-
-(dolist (suite-spec '(("OPENCORTEX-BOOT-TESTS" "BOOT-SUITE
-                      ("OPENCORTEX-COMMUNICATION-TESTS" "COMMUNICATION-PROTOCOL-SUITE
-                      ("OPENCORTEX-PIPELINE-ACT-TESTS" "PIPELINE-ACT-SUITE
-                      ("OPENCORTEX-MEMORY-TESTS" "MEMORY-SUITE
-                      ("OPENCORTEX-ENGINEERING-STANDARDS-TESTS" "ENGINEERING-STANDARDS-SUITE
-                      ("OPENCORTEX-DIAGNOSTICS-TESTS" "DIAGNOSTICS-SUITE
-                      ("OPENCORTEX-GATEWAY-MANAGER-TESTS" "GATEWAY-SUITE
-                      ("OPENCORTEX-TUI-TESTS" "TUI-SUITE
-                      ("OPENCORTEX-LLM-GATEWAY-TESTS" "LLM-GATEWAY-SUITE))
-  (let ((pkg (find-package (first suite-spec))))
-    (when pkg
-      (let ((suite-sym (find-symbol (second suite-spec) pkg)))
-        (when suite-sym
-          (format t "~&--- Suite: ~A ---~%" (first suite-spec))
-          (fiveam:run! suite-sym))))))
-
-(format t "~%=== ALL TESTS COMPLETE ===~%
-#+end_src

harness/memory.lisp

@@ -1,242 +0,0 @@
-(in-package :opencortex)
-
-(defvar *memory* (make-hash-table :test 'equal))
-
-(defvar *history-store* (make-hash-table :test 'equal)
-  "Immutable Merkle-Tree versioning store mapping hashes to objects.")
-
-(defstruct org-object
-  id type attributes content vector parent-id children version last-sync hash)
-
-;; Enable serialization via make-load-form (standard CL)
-(defmethod make-load-form ((obj org-object) &optional env)
-  (make-load-form-saving-slots obj :environment env))
-
-(defun compute-merkle-hash (id type attributes content child-hashes)
-  "Computes a SHA-256 Merkle hash for a node based on its core properties and children's hashes."
-  (let* ((alist (loop for (k v) on attributes by #'cddr collect (cons k v)))
-         (sorted-alist (sort alist #'string< :key (lambda (x) (format nil "~a" (car x)))))
-         (attr-string (format nil "~s" sorted-alist))
-         (children-string (format nil "~{~a~}" child-hashes))
-         (data-string (format nil "ID:~a|TYPE:~s|ATTRS:~a|CONTENT:~a|CHILDREN:~a"
-                              id type attr-string (or content "") children-string))
-         (digester (ironclad:make-digest :sha256)))
-    (ironclad:update-digest digester (ironclad:ascii-string-to-byte-array data-string))
-    (ironclad:byte-array-to-hex-string (ironclad:produce-digest digester))))
-
-(defun ingest-ast (ast &optional parent-id)
-  "Parses an Org AST into the recursive Lisp Memory with Merkle hashing."
-  (let* ((type (getf ast :type))
-         (props (getf ast :properties))
-         (id (or (getf props :ID) (format nil "temp-~a" (get-universal-time))))
-         (contents (getf ast :contents))
-         (raw-content (when (eq type :HEADLINE)
-                        (format nil "~a~%~a" (getf props :TITLE) (or (cl:getf ast :raw-content) ""))))
-         (should-embed (and raw-content (equal (getf props :EMBED) "t")))
-         (child-ids nil)
-         (child-hashes nil))
-    (dolist (child contents)
-      (when (listp child)
-        (let ((child-id (ingest-ast child id)))
-          (push child-id child-ids)
-          (let ((child-id-val child-id))
-             (let ((child-obj (lookup-object child-id-val)))
-               (when child-obj (push (org-object-hash child-obj) child-hashes)))))))
-    (setf child-ids (nreverse child-ids))
-    (setf child-hashes (nreverse child-hashes))
-    (let* ((hash (compute-merkle-hash id type props raw-content child-hashes))
-           (existing-obj (gethash hash *history-store*))
-           (obj (or existing-obj
-                    (make-org-object 
-                     :id id :type type :attributes props :content raw-content
-                     :vector (when should-embed (get-embedding raw-content))
-                     :parent-id parent-id :children child-ids
-                     :version (get-universal-time) :last-sync (get-universal-time)
-                     :hash hash))))
-      (unless existing-obj
-        (setf (gethash hash *history-store*) obj))
-      (setf (gethash id *memory*) obj)
-      id)))
-
-(defvar *object-store-snapshots* nil)
-
-(defun copy-hash-table (hash-table)
-  "Creates a shallow copy of a hash table."
-  (let ((new-table (make-hash-table :test (hash-table-test hash-table) 
-                                    :size (hash-table-size hash-table))))
-    (maphash (lambda (k v) (setf (gethash k new-table) v)) hash-table)
-    new-table))
-
-(defun snapshot-memory ()
-  "Creates a lightweight, Copy-on-Write snapshot using Merkle-Tree pointers."
-  (let ((snapshot (copy-hash-table *memory*)))
-    (push (list :timestamp (get-universal-time) :data snapshot) *object-store-snapshots*)
-    (when (> (length *object-store-snapshots*) 20)
-      (setf *object-store-snapshots* (subseq *object-store-snapshots* 0 20)))
-    (harness-log "MEMORY - CoW Memory snapshot created.")))
-
-(defun rollback-memory (&optional (index 0))
-  "Restores the Memory to a previously captured snapshot using immutable history pointers."
-  (let ((snapshot (nth index *object-store-snapshots*)))
-    (if snapshot
-        (progn (setf *memory* (copy-hash-table (getf snapshot :data)))
-               (harness-log "MEMORY - Memory rolled back to snapshot ~a" index))
-        (harness-log "MEMORY ERROR - Snapshot ~a not found." index))))
-
-(defvar *memory-snapshot-path* nil
-  "Path to the memory snapshot file. Set from MEMORY_SNAPSHOT_PATH env or default.")
-
-(defun ensure-memory-snapshot-path ()
-  "Initializes the snapshot path from environment or default location."
-  (or *memory-snapshot-path*
-      (let ((env-path (uiop:getenv "MEMORY_SNAPSHOT_PATH")))
-        (setf *memory-snapshot-path*
-              (or env-path
-                  (uiop:merge-pathnames* "memory.snap" (user-homedir-pathname)))))))
-
-(defun save-memory-to-disk ()
-  "Serializes *memory* and *history-store* to disk for crash recovery.
-Converts hash tables to alists for proper serialization."
-  (let ((path (ensure-memory-snapshot-path)))
-    (with-open-file (stream path :direction :output :if-exists :supersede :if-does-not-exist :create)
-      (format stream ";; OpenCortex Memory Snapshot~%")
-      (format stream ";; Created: ~a~%~%" (format nil "~a" (get-universal-time)))
-      (let ((memory-alist nil)
-            (history-alist nil))
-        (maphash (lambda (k v) (push (cons k v) memory-alist)) *memory*)
-        (maphash (lambda (k v) (push (cons k v) history-alist)) *history-store*)
-        (prin1 (list :memory memory-alist :history-store history-alist) stream)))
-    (harness-log "MEMORY - Saved to ~a" path)
-    path))
-
-(defun load-memory-from-disk ()
-  "Loads *memory* and *history-store* from disk if the snapshot exists.
-Reconstitutes alists into hash tables."
-  (let ((path (ensure-memory-snapshot-path)))
-    (when (uiop:file-exists-p path)
-      (handler-case
-          (with-open-file (stream path :direction :input)
-            (let ((data (read stream nil)))
-              (when data
-                (let ((memory-alist (getf data :memory))
-                      (history-alist (getf data :history-store)))
-                  (setf *memory* (make-hash-table :test 'equal :size (length memory-alist)))
-                  (dolist (kv memory-alist)
-                    (setf (gethash (car kv) *memory*) (cdr kv)))
-                  (setf *history-store* (make-hash-table :test 'equal :size (length history-alist)))
-                  (dolist (kv history-alist)
-                    (setf (gethash (car kv) *history-store*) (cdr kv)))
-                  (harness-log "MEMORY - Loaded from ~a (~a objects)" path (hash-table-size *memory*))))))
-          (error (c)
-            (harness-log "MEMORY WARNING - Failed to load snapshot: ~a" c))))
-    t))
-
-(defvar *embedding-cache* (make-hash-table :test 'equal)
-  "Cache for embeddings to avoid redundant API calls.")
-
-(defun get-embedding (text)
-  "Generates a vector embedding for the given text via Ollama. Returns nil on failure."
-  (when (or (null text) (string= text ""))
-    (return-from get-embedding nil))
-  (let ((cached (gethash text *embedding-cache*)))
-    (when cached (return-from get-embedding cached)))
-  (let ((result (funcall (get-cognitive-tool-body :get-ollama-embedding) (list :text text))))
-    (when (eq (getf result :status) :success)
-      (let ((vec (getf result :vector)))
-        (setf (gethash text *embedding-cache*) vec)
-        vec))))
-
-(defun cosine-similarity (vec-a vec-b)
-  "Computes cosine similarity between two vectors. Both should be sequences of numbers."
-  (when (or (null vec-a) (null vec-b) (zerop (length vec-a)) (zerop (length vec-b)))
-    (return-from cosine-similarity 0.0))
-  (let ((dot-product (loop for a across vec-a
-                          for b across vec-b
-                          sum (* a b)))
-        (norm-a (sqrt (loop for a across vec-a sum (* a a))))
-        (norm-b (sqrt (loop for b across vec-b sum (* b b)))))
-    (if (or (zerop norm-a) (zerop norm-b))
-        0.0
-        (/ dot-product (* norm-a norm-b)))))
-
-(defun semantic-search (query &key (limit 10) (min-similarity 0.5))
-  "Searches memory for objects semantically similar to the query.
-Returns up to LIMIT objects with similarity >= MIN-SIMILARITY, sorted by similarity descending."
-  (let* ((query-vec (get-embedding query))
-         (results nil))
-    (unless query-vec
-      (harness-log "EMBEDDING: Failed to generate embedding for query: ~a" query)
-      (return-from semantic-search nil))
-    (maphash (lambda (id obj)
-               (let ((obj-vec (org-object-vector obj)))
-                 (when obj-vec
-                   (let ((sim (cosine-similarity query-vec obj-vec)))
-                     (when (>= sim min-similarity)
-                       (push (list :id id :object obj :similarity sim) results))))))
-             *memory*)
-    (setf results (sort results #'> :key (lambda (r) (getf r :similarity))))
-    (subseq results 0 (min limit (length results)))))
-
-(def-cognitive-tool :semantic-search
-  "Searches memory for objects semantically similar to a query."
-  ((:query :type :string :description "The search query.")
-   (:limit :type :integer :description "Maximum results to return." :default 10)
-   (:min-similarity :type :number :description "Minimum similarity threshold (0-1)." :default 0.5))
-  :body (lambda (args)
-          (semantic-search (getf args :query)
-                        :limit (or (getf args :limit) 10)
-                        :min-similarity (or (getf args :min-similarity) 0.5))))
-
-(def-cognitive-tool :generate-embeddings
-  "Generates vector embeddings for given text via the configured embedding backend (Ollama)."
-  ((:texts :type :list :description "List of text strings to embed."))
-  :body (lambda (args)
-          (let ((texts (getf args :texts)))
-            (if (not (and texts (listp texts)))
-                (list :status :error :message ":texts must be a list of strings.")
-                (let ((results nil) (errors nil))
-                  (dolist (text texts)
-                    (let ((vec (get-embedding text)))
-                      (if vec
-                          (push (list :text text :vector vec) results)
-                          (push text errors))))
-                  (list :status (if errors :partial :success)
-                        :embeddings (nreverse results)
-                        :failed (when errors (nreverse errors))
-                        :count (length results)))))))
-
-(defun org-id-new ()
-  "Generates a new UUID string for Org-mode identification."
-  (string-downcase (format nil "~a" (uuid:make-v4-uuid))))
-
-(defun lookup-object (id) 
-  "Retrieves an object from the store by its unique ID."
-  (gethash id *memory*))
-
-(defun list-objects-by-type (type)
-  "Returns a list of all objects matching a specific Org element type."
-  (let ((results nil))
-    (maphash (lambda (id obj) (declare (ignore id)) (when (eq (org-object-type obj) type) (push obj results))) *memory*)
-    results))
-
-(defun list-objects-with-attribute (attr-name value)
-  "Returns a list of all objects where ATTR-NAME matches VALUE."
-  (let ((results nil))
-    (maphash (lambda (id obj)
-               (declare (ignore id))
-               (let ((attrs (org-object-attributes obj)))
-                 (when (equal (getf attrs attr-name) value)
-                   (push obj results))))
-             *memory*)
-    results))
-
-(defun find-headline-missing-id (ast)
-  "Traverses an AST to find headlines that lack an :ID: property."
-  (when (listp ast)
-    (if (and (eq (getf ast :type) :HEADLINE) (not (getf (getf ast :properties) :ID)))
-        ast
-        (cl:some #'find-headline-missing-id (getf ast :contents)))))
-
-(defun file-name-nondirectory (path)
-  "Extracts the filename from a full path string."
-  (let ((pos (position #\/ path :from-end t))) (if pos (subseq path (1+ pos)) path)))

harness/memory.org

@@ -1,173 +0,0 @@
-#+TITLE: The System Memory (memory.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:memory:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle memory.lisp
-
-* Overview
-The Memory module is the cognitive bedrock of the opencortex. It is not a database; it is the agent's live, active "brain" state.
-
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** The Object Repository
-#+begin_src lisp
-(defvar *memory* (make-hash-table :test 'equal))
-(defvar *history-store* (make-hash-table :test 'equal)
-  "Immutable Merkle-Tree versioning store mapping hashes to objects.")
-#+end_src
-
-** The Data Structure (org-object)
-#+begin_src lisp
-(defstruct org-object
-  id type attributes content vector parent-id children version last-sync hash)
-
-(defmethod make-load-form ((obj org-object) &optional env)
-  (make-load-form-saving-slots obj :environment env))
-
-(defun copy-org-object (obj)
-  (make-org-object :id (org-object-id obj)
-                  :type (org-object-type obj)
-                  :attributes (copy-list (org-object-attributes obj))
-                  :content (org-object-content obj)
-                  :vector (org-object-vector obj)
-                  :parent-id (org-object-parent-id obj)
-                  :children (copy-list (org-object-children obj))
-                  :version (org-object-version obj)
-                  :last-sync (org-object-last-sync obj)
-                  :hash (org-object-hash obj)))
-#+end_src
-
-** Merkle Tree Integrity
-#+begin_src lisp
-(defun compute-merkle-hash (id type attributes content child-hashes)
-  (let* ((alist (loop for (k v) on attributes by #'cddr collect (cons k v)))
-         (sorted-alist (sort alist #'string< :key (lambda (x) (format nil "~a" (car x)))))
-         (attr-string (format nil "~s" sorted-alist))
-         (children-string (format nil "~{~a~}" child-hashes))
-         (data-string (format nil "ID:~a|TYPE:~s|ATTRS:~a|CONTENT:~a|CHILDREN:~a"
-                              id type attr-string (or content "") children-string))
-         (digester (ironclad:make-digest :sha256)))
-    (ironclad:update-digest digester (ironclad:ascii-string-to-byte-array data-string))
-    (ironclad:byte-array-to-hex-string (ironclad:produce-digest digester))))
-#+end_src
-
-** Ingest (ingest-ast)
-#+begin_src lisp
-(defun ingest-ast (ast &optional parent-id)
-  (let* ((type (getf ast :type))
-         (props (getf ast :properties))
-         (id (or (getf props :ID) (format nil "temp-~a" (get-universal-time))))
-         (contents (getf ast :contents))
-         (raw-content (when (eq type :HEADLINE)
-                        (format nil "~a~%~a" (getf props :TITLE) (or (getf ast :raw-content) ""))))
-         (child-ids nil) (child-hashes nil))
-    (dolist (child contents)
-      (when (listp child)
-        (let ((child-id (ingest-ast child id)))
-          (push child-id child-ids)
-          (let ((child-obj (gethash child-id *memory*)))
-            (when child-obj (push (org-object-hash child-obj) child-hashes))))))
-    (setf child-ids (nreverse child-ids))
-    (setf child-hashes (nreverse child-hashes))
-    (let* ((hash (compute-merkle-hash id type props raw-content child-hashes))
-           (existing-obj (gethash hash *history-store*))
-           (obj (or existing-obj
-                    (make-org-object 
-                     :id id :type type :attributes props :content raw-content
-                     :parent-id parent-id :children child-ids
-                     :version (get-universal-time) :last-sync (get-universal-time)
-                     :hash hash))))
-      (unless existing-obj (setf (gethash hash *history-store*) obj))
-      (setf (gethash id *memory*) obj)
-      id)))
-#+end_src
-
-** Snapshots (snapshot-memory)
-#+begin_src lisp
-(defvar *object-store-snapshots* nil)
-
-(defun copy-hash-table (hash-table)
-  (let ((new-table (make-hash-table :test (hash-table-test hash-table) 
-                                    :size (hash-table-size hash-table))))
-    (maphash (lambda (k v) (setf (gethash k new-table) v)) hash-table)
-    new-table))
-
-(defun snapshot-memory ()
-  (let ((snapshot (make-hash-table :test 'equal :size (hash-table-size *memory*))))
-    (maphash (lambda (k v) (setf (gethash k snapshot) (copy-org-object v))) *memory*)
-    (push (list :timestamp (get-universal-time) :data snapshot) *object-store-snapshots*)
-    (when (> (length *object-store-snapshots*) 20) (setf *object-store-snapshots* (subseq *object-store-snapshots* 0 20)))
-    (harness-log "MEMORY - CoW Memory snapshot created.")))
-
-(defun rollback-memory (&optional (index 0))
-  (let ((snapshot (nth index *object-store-snapshots*)))
-    (if snapshot
-        (progn (setf *memory* (copy-hash-table (getf snapshot :data)))
-               (harness-log "MEMORY - Memory rolled back to snapshot ~a" index))
-        (harness-log "MEMORY ERROR - Snapshot ~a not found." index))))
-#+end_src
-
-** Persistence (save-memory / load-memory)
-#+begin_src lisp
-(defvar *memory-snapshot-path* nil)
-
-(defun ensure-memory-snapshot-path ()
-  (or *memory-snapshot-path*
-      (let ((env-path (uiop:getenv "MEMORY_SNAPSHOT_PATH")))
-        (setf *memory-snapshot-path*
-              (or env-path (namestring (uiop:merge-pathnames* "memory.snap" (user-homedir-pathname))))))))
-
-(defun save-memory-to-disk ()
-  (let ((path (ensure-memory-snapshot-path)))
-    (with-open-file (stream path :direction :output :if-exists :supersede :if-does-not-exist :create)
-      (let ((memory-alist nil) (history-alist nil))
-        (maphash (lambda (k v) (push (cons k v) memory-alist)) *memory*)
-        (maphash (lambda (k v) (push (cons k v) history-alist)) *history-store*)
-        (prin1 (list :memory memory-alist :history-store history-alist) stream)))
-    (harness-log "MEMORY - Saved to ~a" path)))
-
-(defun load-memory-from-disk ()
-  (let ((path (ensure-memory-snapshot-path)))
-    (when (uiop:file-exists-p path)
-      (handler-case
-          (with-open-file (stream path :direction :input)
-            (let ((data (read stream nil)))
-              (when data
-                (let ((memory-alist (getf data :memory)) (history-alist (getf data :history-store)))
-                  (setf *memory* (make-hash-table :test 'equal :size (length memory-alist)))
-                  (dolist (kv memory-alist) (setf (gethash (car kv) *memory*) (cdr kv)))
-                  (setf *history-store* (make-hash-table :test 'equal :size (length history-alist)))
-                  (dolist (kv history-alist) (setf (gethash (car kv) *history-store*) (cdr kv)))
-                  (harness-log "MEMORY - Loaded from ~a (~a objects)" path (hash-table-size *memory*))))))
-          (error (c) (harness-log "MEMORY WARNING - Failed to load snapshot: ~a" c)))))
-  t)
-#+end_src
-
-* Test Suite
-#+begin_src lisp :tangle ../tests/memory-tests.lisp
-(eval-when (:compile-toplevel :load-toplevel :execute)
-  (ql:quickload :fiveam :silent t))
-
-(defpackage :opencortex-memory-tests
-  (:use :cl :fiveam :opencortex)
-  (:export #:memory-suite))
-
-(in-package :opencortex-memory-tests)
-
-(def-suite memory-suite :description "Tests for the Merkle-Tree Memory")
-(in-suite memory-suite)
-
-(test merkle-hash-consistency
-  (let* ((ast1 '(:type :HEADLINE :properties (:ID "test-1" :TITLE "Node 1") :contents nil)))
-    (clrhash opencortex::*memory*)
-    (let ((id1 (ingest-ast ast1)))
-      (let ((hash1 (org-object-hash (lookup-object id1))))
-        (clrhash opencortex::*memory*)
-        (let ((id2 (ingest-ast ast1)))
-          (is (equal hash1 (org-object-hash (lookup-object id2)))))))))
-#+end_src

harness/perceive.lisp

@@ -1,130 +0,0 @@
-(in-package :opencortex)
-
-(defvar *async-sensors* '(:chat-message :delegation :user-command)
-  "Sensors that are processed in dedicated threads.
-
-  These sensors can block (waiting for API responses, user input, etc.)
-  so they run in separate threads to avoid blocking the main pipeline.
-
-  Other sensors (:heartbeat, :interrupt, :buffer-update) are processed
-  synchronously to maintain temporal ordering.")
-
-(defvar *foveal-focus-id* nil
-  "The Org ID of the node the user is currently interacting with.
-
-  This enables the reasoning engine to provide contextually relevant
-  responses. When editing a specific note, the agent knows which
-  note you're referring to without needing explicit ID references.
-
-  Updated on :point-update events from Emacs.")
-
-(defun inject-stimulus (raw-message &key stream (depth 0))
-  "Inject a raw message into the signal processing pipeline.
-
-  RAW-MESSAGE is a property list that will be normalized into a Signal.
-  STREAM is an optional output stream for responses (used by TUI/CLI).
-  DEPTH tracks recursion depth for feedback loops.
-
-  This function determines whether to process synchronously or
-  asynchronously based on the sensor type, then calls process-signal
-  to run through the Perceive -> Reason -> Act pipeline.
-
-  Error handling: Uses restarts to prevent individual signals from
-  crashing the entire system. Failed signals are logged and dropped."
-
-  (let* ((payload (getf raw-message :payload))
-         (sensor (getf payload :sensor))
-         (meta (getf raw-message :meta))
-         (async-p (or (getf payload :async-p)
-                     (member sensor *async-sensors*))))
-
-    ;; Ensure metadata exists
-    (unless meta
-      (setf meta (list :SOURCE :SYSTEM :SESSION-ID "internal")))
-
-    ;; Attach reply stream if provided
-    (when stream
-      (setf (getf meta :reply-stream) stream))
-
-    (setf (getf raw-message :meta) meta)
-
-    (if async-p
-        ;; Async: process in dedicated thread
-        (bt:make-thread
-         (lambda ()
-           (restart-case
-               (handler-bind ((error (lambda (c)
-                                       (harness-log "ASYNC ERROR: ~a" c)
-                                       (invoke-restart 'skip-event))))
-                 (process-signal raw-message))
-             (skip-event () nil)))
-         :name "opencortex-async-task")
-
-        ;; Sync: process in main thread with recovery
-        (restart-case
-            (handler-bind ((error (lambda (c)
-                                    (harness-log "SYSTEM ERROR: ~a" c)
-                                    (invoke-restart 'skip-event))))
-              (process-signal raw-message))
-          (skip-event ()
-            (harness-log "SYSTEM RECOVERY: Stimulus dropped."))))))
-
-(defun perceive-gate (signal)
-  "Stage 1 of the metabolic pipeline: Normalize sensory input.
-
-  This function:
-  1. Logs the incoming signal for debugging
-  2. Handles special sensor types (:buffer-update, :point-update, etc.)
-  3. Updates the Memory graph with incoming data
-  4. Tracks foveal focus (user's current node)
-  5. Sets :status to :perceived
-
-  Modifies the signal in place and returns it for the next stage.
-
-  Memory snapshots are taken before AST updates to enable rollback
-  if the update causes issues."
-
-  (let* ((payload (getf signal :payload))
-         (type (getf signal :type))
-         (meta (getf signal :meta))
-         (sensor (getf payload :sensor)))
-
-    ;; Log the incoming signal for debugging
-    (harness-log "GATE [Perceive]: ~a (~a) [Source: ~s]"
-                 type (or sensor "no-sensor") (getf meta :source))
-
-    ;; Handle EVENT type sensors
-    (cond ((eq type :EVENT)
-           (case sensor
-
-             ;; Org buffer was modified - update memory
-             (:buffer-update
-              (let ((ast (getf payload :ast)))
-                (when ast
-                  (snapshot-memory)  ; Enable rollback if update causes issues
-                  (ingest-ast ast))))
-
-             ;; Point moved to different org node - update focus
-             (:point-update
-              (let ((element (getf payload :element)))
-                (when element
-                  (snapshot-memory)
-                  ;; Track foveal focus for contextual reasoning
-                  (setf *foveal-focus-id*
-                        (ignore-errors (getf element :id)))
-                  (ingest-ast element))))
-
-             ;; System interrupt - trigger shutdown
-             (:interrupt
-              (bt:with-lock-held (*interrupt-lock*)
-                (setf *interrupt-flag* t)))))
-
-          ;; Log responses from actuators
-          ((eq type :RESPONSE)
-           (harness-log "GATE [Perceive]: Act Result -> ~a"
-                       (getf payload :status))))
-
-    ;; Update signal status
-    (setf (getf signal :status) :perceived)
-    (setf (getf signal :foveal-focus) *foveal-focus-id*)
-    signal))

harness/reason.lisp

@@ -1,384 +0,0 @@
-(in-package :opencortex)
-
-(defvar *probabilistic-backends* (make-hash-table :test 'equal)
-  "Registry mapping provider keywords (:openrouter, :ollama) to their calling functions.")
-
-(defvar *provider-cascade* nil
-  "Ordered list of provider keywords to try. First available provider wins.")
-
-(defvar *model-selector-fn* nil
-  "Optional function that selects a specific model for each provider.
-  Signature: (funcall fn provider context) => model-name-string")
-
-(defvar *consensus-enabled-p* nil
-  "When T, run multiple providers and compare results for critical decisions.")
-
-(defun register-probabilistic-backend (name fn)
-  "Register a neural provider backend.
-
-  NAME is a keyword like :openrouter or :ollama.
-  FN is a function with signature: (funcall fn prompt system-prompt &key model)
-     returning either:
-     - (list :status :success :content \"response text\")
-     - (list :status :error :message \"error description\")
-     - a simple string on success
-
-  Example registration:
-    (register-probabilistic-backend :openrouter #'openrouter-call)"
-
-  (setf (gethash name *probabilistic-backends*) fn))
-
-(defun probabilistic-call (prompt &key
-                                (system-prompt "You are the Probabilistic engine.")
-                                (cascade nil)
-                                (context nil))
-  "Dispatch a neural request through the provider cascade.
-
-  PROMPT - The user's query or task description.
-  SYSTEM-PROMPT - Instructions for how the LLM should behave.
-  CASCADE - Override the default provider cascade.
-  CONTEXT - Current signal context (for model selection).
-
-  Returns the LLM response as a string, or a failure plist if all providers fail.
-
-  The cascade mechanism ensures reliability: if OpenRouter is rate-limited,
-  it automatically falls back to OpenAI, then Anthropic, etc."
-
-  (let ((backends (or cascade *provider-cascade*)))
-    (or (dolist (backend backends)
-          (let ((backend-fn (gethash backend *probabilistic-backends*)))
-            (when backend-fn
-              (harness-log "PROBABILISTIC: Attempting backend ~a..." backend)
-
-              ;; Optional model selection based on context
-              (let* ((model (when *model-selector-fn*
-                              (funcall *model-selector-fn* backend context)))
-                     (result (if model
-                                 (funcall backend-fn prompt system-prompt :model model)
-                                 (funcall backend-fn prompt system-prompt))))
-
-                ;; Normalize result format
-                (cond ((and (listp result) (eq (getf result :status) :success))
-                       (return (getf result :content)))
-                      ((stringp result)
-                       (return result))
-                      (t
-                       (harness-log "PROBABILISTIC: Backend ~a failed: ~a"
-                                   backend (getf result :message))))))))
-
-        ;; All providers failed
-        (list :type :LOG
-              :payload (list :text "Neural Cascade Failure: All providers exhausted.")))))
-
-(defun strip-markdown (text)
-  "Strip markdown formatting from LLM output.
-
-  LLMs often wrap their responses in code fences (```lisp ...```).
-  This function removes those markers to extract the raw plist.
-
-  Handles:
-  - Leading code fences with language tags: ```lisp
-  - Trailing code fences: ```
-  - Orphan closing fences: ```"
-
-  (if (and text (stringp text))
-      (let ((cleaned text))
-        (setf cleaned (cl-ppcre:regex-replace-all "^```[a-z]*\\n" cleaned ""))
-        (setf cleaned (cl-ppcre:regex-replace-all "\\n```$" cleaned ""))
-        (setf cleaned (cl-ppcre:regex-replace-all "```" cleaned ""))
-        (string-trim '(#\Space #\Newline #\Tab) cleaned))
-      text))
-
-(defun normalize-plist-keywords (plist)
-  "Normalize all keys in a plist to keywords.
-
-  LLMs often return plists with unquoted keys: (TYPE REQUEST ...)
-  instead of keyword syntax: (:TYPE :REQUEST ...)
-
-  This function converts all symbol keys to their keyword equivalents,
-  making the plist compatible with standard Lisp property accessors.
-
-  Example transformation:
-    (TYPE REQUEST PAYLOAD (ACTION MESSAGE TEXT \"Hi\"))
-    => (:TYPE :REQUEST :PAYLOAD (:ACTION :MESSAGE :TEXT \"Hi\"))"
-
-  (when (listp plist)
-    (loop for (k . rest) on plist by #'cddr
-          collect (if (and (symbolp k) (not (keywordp k)))
-                       (intern (string k) :keyword)
-                       k)
-          collect (car rest))))
-
-(defun think (context)
-  "Generate a Lisp action proposal based on current context.
-
-  This is the core cognitive function. It:
-
-  1. Finds the most relevant skill based on context
-  2. Assembles global awareness (memory context, system logs)
-  3. Constructs a detailed prompt with available tools
-  4. Calls the LLM via probabilistic-call
-  5. Parses the LLM response into a structured action plist
-
-  The LLM is instructed to respond with exactly ONE plist, never prose.
-  This constraint makes parsing deterministic and prevents rambling.
-
-  Returns a plist with structure:
-    (:TYPE :REQUEST :TARGET :CLI :PAYLOAD (:ACTION :MESSAGE :TEXT \"...\"))"
-
-  ;; Gather context components
-  (let* ((active-skill (find-triggered-skill context))
-         (tool-belt (generate-tool-belt-prompt))
-         (global-context (context-assemble-global-awareness))
-         (system-logs (context-get-system-logs))
-         (assistant-name (or (uiop:getenv "MEMEX_ASSISTANT") "Agent"))
-         (rejection-trace (proto-get (proto-get context :payload) :rejection-trace)))
-
-    ;; Generate prompt from skill or raw text
-    (let* ((prompt-generator (when active-skill
-                              (skill-probabilistic-prompt active-skill)))
-           (raw-prompt (if prompt-generator
-                           (funcall prompt-generator context)
-                           ;; Fallback: use raw user input
-                           (let ((p (proto-get (proto-get context :payload) :text)))
-                             (if (and p (stringp p))
-                                 p
-                                 "Maintain metabolic stasis."))))
-           
-           ;; Inject Reflection Loop feedback if a previous proposal was rejected
-           (reflection-feedback (if rejection-trace
-                                    (format nil "~%~%PREVIOUS PROPOSAL REJECTED:~%Your previous proposal was rejected by the deterministic safety gates.~%Rejection Trace: ~a~%You MUST fix the syntax or logic error described above and try again." rejection-trace)
-                                    ""))
-
-           (system-prompt (format nil
-                                   "IDENTITY: ~a~a
-
-You are a component of the OpenCortex neurosymbolic AI agent.
-Your task is to generate exactly ONE valid Lisp plist response.
-
-MANDATE: Respond with ONE Lisp plist. Never output prose.
-
-IMPORTANT: To reply to the user, you MUST use:
-(:TYPE :REQUEST :PAYLOAD (:ACTION :MESSAGE :TEXT \"<Response Text>\"))
-
-To call a tool, you MUST use:
-(:TYPE :REQUEST :TARGET :TOOL :ACTION :CALL :TOOL \"<name>\" :ARGS (:arg1 \"val\"))
-
-MANDATORY VALIDATION RULE: Before declaring any Lisp code edit complete,
-you MUST call the `:validate-lisp` tool with the proposed code. If the tool
-returns `:status :error`, read the `:reason` and `:failed` fields, fix the
-defect, and re-validate. You are strictly forbidden from relying on your
-own paren-balancing or syntax intuition.
-
-PROVIDER RULE: Always use the default cascade provider unless a specific
-model or capability is required for the task.
-
-AVAILABLE TOOLS:
-~a
-
-GLOBAL CONTEXT:
-~a
-
-RECENT LOGS:
-~a"
-                                   assistant-name
-                                   reflection-feedback
-                                   tool-belt
-                                   global-context
-                                   system-logs)))
-
-      ;; Call LLM and process response
-      (let* ((thought (probabilistic-call raw-prompt
-                                           :system-prompt system-prompt
-                                           :context context))
-             (cleaned (strip-markdown thought))
-             (meta (proto-get context :meta))
-             (source (proto-get meta :source)))
-
-        (when cleaned
-          (harness-log "THINK: LLM raw output = ~a"
-                       (subseq cleaned 0 (min 200 (length cleaned)))))
-
-        ;; Parse LLM response
-        (if (and cleaned (stringp cleaned) (> (length cleaned) 0))
-            (let ((*read-eval* nil))
-              (if (char= (char cleaned 0) #\()
-                  ;; Response starts with paren - try to parse as plist
-                  (handler-case
-                      (let ((parsed (read-from-string cleaned)))
-                        (when parsed
-                          (harness-log "THINK: parsed = ~a" parsed)
-
-                          ;; Normalize keyword keys (LLM often returns TYPE instead of :TYPE)
-                          (let ((parsed-normalized (normalize-plist-keywords parsed))
-                                (type (proto-get parsed :TYPE))
-                                (target (or (proto-get parsed :TARGET)
-                                           (proto-get parsed :target))))
-
-                            (cond
-                              ;; Recognized message type - use directly
-                              ((member type '(:REQUEST :EVENT :STATUS :RESPONSE))
-                               (unless (proto-get parsed :target)
-                                 (setf (getf parsed :target) (or source :CLI)))
-                               parsed-normalized)
-
-                              ;; Tool call detected - wrap in standard envelope
-                              ((or (eq target :TOOL)
-                                   (eq target :tool)
-                                   (getf parsed :TOOL)
-                                   (getf parsed :tool)
-                                   (and (listp parsed)
-                                        (listp (car parsed))
-                                        (keywordp (caar parsed))))
-                               (list :TYPE :REQUEST
-                                     :TARGET :TOOL
-                                     :PAYLOAD (normalize-plist-keywords parsed)))
-
-                              ;; Unknown format - treat as user message
-                              (t
-                               (list :TYPE :REQUEST
-                                     :TARGET (or source :CLI)
-                                     :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned)))))))
-                    (error (c)
-                      (harness-log "THINK ERROR: ~a" c)
-                      (list :TYPE :REQUEST
-                            :TARGET (or source :CLI)
-                            :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned))))
-
-                  ;; No leading paren - treat as plain text message
-                  (list :TYPE :REQUEST
-                        :TARGET (or source :CLI)
-                        :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned))))
-
-            ;; No response from LLM
-            thought)))))
-
-(defun deterministic-verify (proposed-action context)
-  "Run all skill deterministic gates on a proposed action.
-
-  Each skill can define a deterministic function that either:
-  - Passes the action through unchanged
-  - Modifies the action (adds explanation, changes target, etc.)
-  - Blocks the action (returns a :LOG message instead)
-
-  Skills are sorted by priority (highest first). A skill with higher
-  priority can intercept and modify actions before lower-priority
-  skills see them.
-
-  The Bouncer Pattern: If any skill returns a :LOG or :EVENT type,
-  processing stops and that message is returned immediately. This
-  allows skills to veto actions.
-
-  Example skill chain:
-  1. Policy skill (priority 500) - checks for missing explanations
-  2. Protocol validator (priority 95) - validates message schema
-  3. Shell actuator guard (priority 50) - checks command whitelist"
-
-  (let ((current-action proposed-action)
-        (skills nil))
-
-    ;; Collect all skills with deterministic functions
-    (maphash (lambda (name skill)
-               (declare (ignore name))
-               (when (skill-deterministic-fn skill)
-                 (push skill skills)))
-             *skills-registry*)
-
-    ;; Sort by priority (highest first)
-    (setf skills (sort skills #'> :key #'skill-priority))
-
-    ;; Run each skill's gate
-    (dolist (skill skills)
-      (let ((trigger (skill-trigger-fn skill))
-            (gate (skill-deterministic-fn skill)))
-
-        ;; Skill activates if no trigger or trigger returns true
-        (when (or (null trigger)
-                  (ignore-errors (funcall trigger context)))
-
-          ;; Run the gate
-          (let ((next-action (funcall gate current-action context)))
-            (let ((original-type (proto-get current-action :type)))
-
-              ;; Check if skill intercepted (returned LOG/EVENT instead of REQUEST)
-              (when (and (listp next-action)
-                         (member (proto-get next-action :type)
-                                '(:LOG :EVENT :log :event))
-                         (or (not (member original-type '(:LOG :EVENT :log :event)))
-                             (not (eq next-action current-action))))
-
-                ;; Skill blocked or modified - stop processing
-                (harness-log "DETERMINISTIC: Intercepted by skill '~a'"
-                            (skill-name skill))
-                (return-from deterministic-verify next-action)))
-
-            ;; Action passed through - continue to next skill
-            (setf current-action next-action)))))
-
-    ;; Return final action (may be modified by skills, or original if all passed)
-    current-action))
-
-(defun reason-gate (signal)
-  "Stage 2 of the metabolic pipeline: Reason.
-
-  Transforms perceived signals into approved actions by combining:
-  1. Probabilistic reasoning (LLM generates proposal)
-  2. Deterministic verification (skills validate proposal)
-
-  Only processes :EVENT signals with :user-input or :chat-message sensors.
-  Other signals pass through unchanged (heartbeats, tool outputs, etc.).
-
-  Modifies the signal in place by setting:
-  - :approved-action - The final verified action, or NIL
-  - :status - :reasoned
-
-  Returns the modified signal."
-
-  (let* ((type (proto-get signal :type))
-         (payload (proto-get signal :payload))
-         (sensor (proto-get payload :sensor)))
-
-    ;; Only reason about user input, not internal signals
-    (unless (and (eq type :EVENT)
-                (member sensor '(:user-input :chat-message)))
-      (return-from reason-gate signal))
-
-    ;; Reflection Loop: Retry up to 3 times if deterministic gates reject
-    (let ((retries 3)
-          (current-signal (copy-tree signal))
-          (last-rejection nil))
-      (loop
-        (when (<= retries 0)
-          (harness-log "REASON: Reflection loop exhausted. Final rejection.")
-          (setf (getf signal :approved-action) last-rejection)
-          (setf (getf signal :status) :reasoned)
-          (return signal))
-
-        (when last-rejection
-          (setf (getf (getf current-signal :payload) :rejection-trace) last-rejection))
-
-        (let ((candidate (think current-signal)))
-          (harness-log "REASON: candidate type = ~a" (type-of candidate))
-
-          (if (and candidate
-                   (listp candidate)
-                   (or (keywordp (car candidate))
-                       (eq (car candidate) 'TYPE)
-                       (eq (car candidate) 'type)))
-
-              (let ((verified (deterministic-verify candidate current-signal)))
-                (if (member (getf verified :type) '(:LOG :EVENT :log :event))
-                    (progn
-                      (harness-log "REASON: Proposal rejected by gate. Retrying (~a left)." (1- retries))
-                      (decf retries)
-                      (setf last-rejection verified))
-                    (progn
-                      (setf (getf signal :approved-action) verified)
-                      (setf (getf signal :status) :reasoned)
-                      (return signal))))
-
-              (progn
-                (harness-log "REASON: Invalid candidate type ~a, dropping" (type-of candidate))
-                (setf (getf signal :approved-action) nil)
-                (setf (getf signal :status) :reasoned)
-                (return signal))))))))

harness/skills.lisp

@@ -1,467 +0,0 @@
-(in-package :opencortex)
-
-(defun COSINE-SIMILARITY (v1 v2)
-  "Computes cosine similarity between two vectors."
-  (let* ((len1 (length v1))
-         (len2 (length v2)))
-    (if (or (zerop len1) (zerop len2))
-        0.0
-        (let* ((dot 0.0d0)
-               (n1 0.0d0)
-               (n2 0.0d0))
-          (dotimes (i (min len1 len2))
-            (let* ((x (coerce (elt v1 i) 'double-float))
-                   (y (coerce (elt v2 i) 'double-float)))
-              (incf dot (* x y))
-              (incf n1 (* x x))
-              (incf n2 (* y y))))
-          (if (or (zerop n1) (zerop n2))
-              0.0
-              (/ dot (sqrt (* n1 n2))))))))
-
-;; TODO: Stub for vault - implement later
-(defun VAULT-MASK-STRING (s) "[MASKED]")
-
-(defvar *VAULT-MEMORY* (make-hash-table :test 'equal))
-
-
-(defstruct skill name priority dependencies trigger-fn probabilistic-prompt deterministic-fn)
-
-(defvar *skill-catalog* (make-hash-table :test 'equal)
-  "A stateful tracking table for all skill files discovered in the environment.")
-
-(defstruct skill-entry 
-  filename 
-  (status :discovered) ;; :discovered, :loading, :ready, :failed
-  error-log
-  (load-time 0))
-
-(defun find-triggered-skill (context)
-  "Returns the highest priority skill whose trigger matches context AND has a probabilistic prompt."
-  (let ((triggered nil))
-    (maphash (lambda (name skill) 
-               (declare (ignore name)) 
-               (when (and (skill-probabilistic-prompt skill)
-                          (ignore-errors (funcall (skill-trigger-fn skill) context)))
-                 (push skill triggered))) 
-             *skills-registry*)
-    (first (sort triggered #'> :key #'skill-priority))))
-
-(defmacro defskill (name &key priority dependencies trigger probabilistic deterministic)
-  "Registers a new skill into the global registry."
-  `(setf (gethash (string-downcase (string ,name)) *skills-registry*)
-         (make-skill :name (string-downcase (string ,name)) 
-                    :priority (or ,priority 10) 
-                    :dependencies ',dependencies
-                    :trigger-fn ,trigger 
-                    :probabilistic-prompt ,probabilistic 
-                    :deterministic-fn ,deterministic)))
-
-(defun resolve-skill-dependencies (skill-name)
-  "Recursively resolves dependencies for a given skill name."
-  (let ((resolved nil) (seen nil))
-    (labels ((visit (name) 
-               (unless (member name seen :test #'equal) 
-                 (push name seen)
-                 (let ((skill (gethash (string-downcase (string name)) *skills-registry*)))
-                   (when skill 
-                     (dolist (dep (skill-dependencies skill)) 
-                       (visit dep))))
-                 (push name resolved))))
-      (visit skill-name) 
-      (nreverse resolved))))
-
-(defun parse-skill-metadata (filepath)
-  "Extracts ID and DEPENDS_ON tags from org file."
-  (let ((dependencies nil)
-        (id nil)
-        (content (uiop:read-file-string filepath)))
-    ;; Simple ID extraction using string search
-    (let ((id-start (search ":ID:" content)))
-      (when id-start
-        (let ((id-end (position #\Newline content :start id-start)))
-          (when id-end
-            (setf id (string-trim " " (subseq content (+ id-start 4) id-end)))))))
-    ;; Simple DEPENDS_ON extraction
-    (let ((pos 0))
-      (loop while (setf pos (search "#+DEPENDS_ON:" content :start2 pos))
-            do (let ((end (position #\Newline content :start pos)))
-              (when end
-                (let ((line (string-trim " " (subseq content (+ pos 13) end))))
-                  (dolist (d (uiop:split-string line :separator '(#\Space #\Tab)))
-                    (unless (string= d "")
-                      (push d dependencies))))
-                (setf pos end)))))
-    (values id (reverse dependencies))))
-
-(defun topological-sort-skills (skills-dir)
-  "Returns a list of skill filepaths sorted by dependency (dependencies first)."
-  (let ((files (uiop:directory-files skills-dir "org-skill-*.org"))
-        (adj (make-hash-table :test 'equal))
-        (name-to-file (make-hash-table :test 'equal))
-        (id-to-file (make-hash-table :test 'equal))
-        (result nil)
-        (visited (make-hash-table :test 'equal))
-        (stack (make-hash-table :test 'equal)))
-    (dolist (file files)
-      (let ((filename (pathname-name file)))
-        (multiple-value-bind (id deps) (parse-skill-metadata file)
-          (setf (gethash (string-downcase filename) name-to-file) file)
-          (when id (setf (gethash (string-downcase id) id-to-file) file))
-          (setf (gethash (string-downcase filename) adj) deps))))
-    (labels ((visit (file)
-               (let* ((filename (pathname-name file))
-                      (node-key (string-downcase filename)))
-                 (unless (gethash node-key visited)
-                   (setf (gethash node-key stack) t)
-                   (dolist (dep (gethash node-key adj))
-                     (let* ((is-id-p (uiop:string-prefix-p "id:" (string-downcase dep)))
-                            (dep-key (string-downcase (if is-id-p (subseq dep 3) dep)))
-                            (dep-file (if is-id-p 
-                                          (gethash dep-key id-to-file)
-                                          (or (gethash dep-key id-to-file)
-                                              (gethash dep-key name-to-file)))))
-                       (when dep-file
-                         (let ((dep-filename (pathname-name dep-file)))
-                           (if (gethash (string-downcase dep-filename) stack)
-                               (error "Circular dependency detected: ~a -> ~a" filename dep-filename)
-                               (visit dep-file))))))
-                   (setf (gethash node-key stack) nil)
-                   (setf (gethash node-key visited) t)
-                   (push file result)))))
-      (let ((filenames (sort (mapcar #'pathname-name files) #'string<)))
-        (dolist (name filenames)
-          (let ((file (gethash (string-downcase name) name-to-file)))
-            (when file (visit file)))))
-      (nreverse result))))
-
-(defun validate-lisp-syntax (code-string)
-  "Checks if a string contains valid, readable Common Lisp forms.
-Delegates to the Lisp Validator skill when available; falls back to a basic
-reader check during early boot before the validator skill is loaded."
-  (let ((result
-          (if (fboundp 'lisp-utils-validate)
-              (lisp-utils-validate code-string :strict nil)
-              (handler-case
-                  (let ((*read-eval* nil))
-                    (with-input-from-string (stream (format nil "(progn ~a)" code-string))
-                      (loop for form = (read stream nil :eof) until (eq form :eof)))
-                    (list :status :success))
-                (error (c)
-                  (list :status :error :reason (format nil "~a" c)))))))
-    (if (eq (getf result :status) :success)
-        (values t nil)
-        (values nil (or (getf result :reason) "Lisp Validator rejected code.")))))
-
-(defun extract-tangle-target (line)
-  "Extracts the value of the :tangle header from an org src block line.
-Handles both simple strings and parenthesized elisp expressions."
-  (let ((pos (search ":tangle" line)))
-    (when pos
-      (let ((rest (string-trim '(#\Space #\Tab) (subseq line (+ pos 7)))))
-        (if (char= (char rest 0) #\()
-            ;; It's an elisp expression, find the matching closing paren
-            (let ((balance 0)
-                  (end nil))
-              (dotimes (i (length rest))
-                (let ((ch (char rest i)))
-                  (cond ((char= ch #\() (incf balance))
-                        ((char= ch #\)) (decf balance)))
-                  (when (and (> i 0) (= balance 0))
-                    (setf end (1+ i))
-                    (return-from extract-tangle-target (subseq rest 0 end)))))
-              rest)
-            ;; It's a simple string, stop at next space
-            (let ((end (position #\Space rest)))
-              (if end (subseq rest 0 end) rest)))))))
-
-(defun load-skill-from-org (filepath)
-  "Parses and evaluates Lisp blocks with :tangle directives from an Org file.
-Only loads blocks that specify a .lisp tangle target, ignoring tests and examples."
-  (let* ((skill-base-name (pathname-name filepath))
-         (entry (or (gethash skill-base-name *skill-catalog*) (make-skill-entry :filename skill-base-name))))
-    (setf (skill-entry-status entry) :loading)
-    (setf (gethash skill-base-name *skill-catalog*) entry)
-    
-    (handler-case
-        (let* ((content (uiop:read-file-string filepath))
-               (lines (uiop:split-string content :separator '(#\Newline)))
-               (in-lisp-block nil)
-               (collect-this-block nil)
-               (lisp-code "")
-               (pkg-name (intern (string-upcase (format nil "OPENCORTEX.SKILLS.~a" skill-base-name)) :keyword)))
-          
-          (dolist (line lines)
-            (let ((clean-line (string-trim '(#\Space #\Tab #\Return) line)))
-              (cond
-                ((uiop:string-prefix-p "#+begin_src lisp" clean-line)
-                 (setf in-lisp-block t)
-                 (let ((tangle-target (extract-tangle-target clean-line)))
-                   (if (or (and tangle-target (not (search "/tests" tangle-target)) (not (search ":tangle no" clean-line)))
-                           (and (not tangle-target) (not (search ":tangle no" clean-line))))
-                       (setf collect-this-block t)
-                       (setf collect-this-block nil))))
-                
-                ((uiop:string-prefix-p "#+end_src" clean-line)
-                 (setf in-lisp-block nil)
-                 (setf collect-this-block nil))
-                
-                ((and in-lisp-block collect-this-block)
-                 (unless (or (uiop:string-prefix-p ":PROPERTIES:" (string-upcase clean-line))
-                             (uiop:string-prefix-p ":END:" (string-upcase clean-line)))
-                   (setf lisp-code (concatenate 'string lisp-code line (string #\Newline))))))))
-          
-          (if (= (length lisp-code) 0)
-              (progn (setf (skill-entry-status entry) :ready) t)
-              (progn
-                (multiple-value-bind (valid-p err) (validate-lisp-syntax lisp-code)
-                  (unless valid-p (error "Syntax Error: ~a" err)))
-                (harness-log "HARNESS: Jailing skill '~a' in package ~a" skill-base-name pkg-name)
-                (unless (find-package pkg-name)
-                  (let ((new-pkg (make-package pkg-name :use '(:cl))))
-                    (use-package :opencortex new-pkg)))
-                (let ((*read-eval* nil) (*package* (find-package pkg-name)))
-                  (eval (read-from-string (format nil "(progn ~a)" lisp-code))))
-                
-                ;; Export symbols back to :OPENCORTEX for discoverability and testing
-                (let* ((target-pkg (find-package :opencortex))
-                       (raw-name (string-upcase skill-base-name))
-                       (short-name (if (uiop:string-prefix-p "ORG-SKILL-" raw-name)
-                                       (subseq raw-name 10)
-                                       raw-name)))
-                  (do-symbols (sym (find-package pkg-name))
-                    (when (eq (symbol-package sym) (find-package pkg-name))
-                      (let ((sn (symbol-name sym)))
-                        (when (or (uiop:string-prefix-p raw-name sn)
-                                  (uiop:string-prefix-p short-name sn))
-                          (harness-log "LOADER: Exporting ~a to :OPENCORTEX" sn)
-                          ;; Resolve potential name conflicts by uninterning first
-                          (let ((existing (find-symbol sn target-pkg)))
-                            (when (and existing (not (eq existing sym)))
-                              (unintern existing target-pkg)))
-                          (import sym target-pkg)
-                          (export sym target-pkg))))))
-                
-                (setf (skill-entry-status entry) :ready)
-                t)))
-      (error (c)
-        (let ((msg (format nil "~a" c)))
-          (harness-log "LOADER ERROR in skill '~a': ~a" skill-base-name msg)
-          (setf (skill-entry-status entry) :failed)
-          (setf (skill-entry-error-log entry) msg)
-          nil)))))
-
-(defun load-skill-with-timeout (filepath timeout-seconds)
-  "Loads a skill Org file with a hard execution timeout."
-  (let* ((finished nil)
-         (thread (bt:make-thread (lambda () 
-                                   (if (load-skill-from-org filepath)
-                                       (setf finished t)
-                                       (setf finished :error)))))
-         (start-time (get-internal-real-time))
-         (timeout-units (truncate (* timeout-seconds internal-time-units-per-second))))
-    (loop 
-      (when (eq finished t) (return :success))
-      (when (eq finished :error) (return :error))
-      (unless (bt:thread-alive-p thread) (return :error))
-      (when (> (- (get-internal-real-time) start-time) timeout-units)
-        (harness-log "HARNESS: Timing out skill ~a..." (pathname-name filepath))
-        #+sbcl (sb-thread:terminate-thread thread)
-        #-sbcl (bt:destroy-thread thread)
-        (return :timeout))
-      (sleep 0.05))))
-
-(defun initialize-all-skills ()
-  "Scans the directory defined by SKILLS_DIR and hot-loads skills using topological order."
-  (let* ((env-path (uiop:getenv "SKILLS_DIR"))
-         (skills-dir-str (or env-path (namestring (merge-pathnames "notes/" (user-homedir-pathname)))))
-         (resolved-path (context-resolve-path skills-dir-str))
-         (skills-dir (if resolved-path (uiop:ensure-directory-pathname resolved-path) nil)))
-    
-    (unless (and skills-dir (uiop:directory-exists-p skills-dir))
-      (harness-log "HARNESS ERROR: Skills directory not found: ~a" skills-dir-str)
-      (return-from initialize-all-skills nil))
-
-    (let ((sorted-files (topological-sort-skills skills-dir)))
-      (let* ((mandatory-env (uiop:getenv "MANDATORY_SKILLS"))
-             (mandatory-skills (if mandatory-env 
-                                   (mapcar (lambda (s) (string-trim '(#\Space #\" #\') s)) 
-                                           (uiop:split-string mandatory-env :separator '( #\,)))
-                                   '("org-skill-policy" "org-skill-bouncer"))))
-        (dolist (req mandatory-skills)
-          (unless (member req sorted-files :key #'pathname-name :test #'string-equal)
-            (error "BOOT FAILURE: Mandatory skill '~a' not found in skills directory: ~a" req (uiop:native-namestring skills-dir))))
-      
-        (harness-log "==================================================")
-        (harness-log " LOADER: Initializing ~a skills..." (length sorted-files))
-      
-        (dolist (file sorted-files)
-          (let* ((skill-name (pathname-name file))
-                 (is-mandatory (member skill-name mandatory-skills :test #'string-equal)))
-            (harness-log " LOADER: Loading ~a..." skill-name)
-            (let ((status (load-skill-with-timeout file 5)))
-              (unless (eq status :success)
-                (if is-mandatory
-                    (error "BOOT FAILURE: Mandatory skill '~a' failed to load (Status: ~a)." skill-name status)
-                    (harness-log "LOADER WARNING: Skill '~a' failed to load." skill-name))))))
-      
-        (let ((ready 0) (failed 0))
-          (maphash (lambda (k v) 
-                     (declare (ignore k))
-                     (if (eq (skill-entry-status v) :ready) (incf ready) (incf failed)))
-                   *skill-catalog*)
-          (harness-log " LOADER: Boot Complete. [Ready: ~a] [Failed: ~a]" ready failed)
-          (harness-log "==================================================")
-          (values ready failed))))))
-
-(defun generate-tool-belt-prompt ()
-  "Aggregates all registered cognitive tools into a descriptive prompt."
-  (let ((output (format nil "AVAILABLE TOOLS:
-You can call tools by returning a Lisp plist: (:target :tool :action :call :tool <name> :args (...))
-
-EXAMPLES:
-(:target :tool :action :call :tool \"eval\" :args (:code \"(+ 1 1)\"))
-(:target :tool :action :call :tool \"grep-search\" :args (:pattern \"autonomousty\"))
-(:target :tool :action :call :tool \"shell\" :args (:cmd \"ls -la\"))
-
----
-" )))
-    (maphash (lambda (name tool)
-               (let ((perm (ignore-errors (uiop:symbol-call :opencortex.skills.org-skill-tool-permissions :get-tool-permission name))))
-                 (unless (eq perm :deny)
-                   (setf output (concatenate 'string output
-                                             (format nil "- ~a: ~a~%  Parameters: ~s~%~%"
-                                                     name
-                                                     (cognitive-tool-description tool)
-                                                     (cognitive-tool-parameters tool)))))))
-             *cognitive-tools*)
-    output))
-
-(def-cognitive-tool :grep-search "Searches for a pattern in the project files."
-  ((:pattern :type :string :description "The regex pattern to search for")
-   (:dir :type :string :description "Directory to search in (default is project root)"))
-  :body (lambda (args)
-          (let ((pattern (getf args :pattern))
-                (dir (or (getf args :dir) (uiop:getenv "MEMEX_DIR"))))
-            (uiop:run-program (list "grep" "-r" "-n" "--exclude-dir=node_modules" pattern dir) 
-                              :output :string :ignore-error-status t))))
-
-(def-cognitive-tool :shell "Executes a shell command on the local machine. Use this for file operations, system checks, or running tests."
-  ((:cmd :type :string :description "The full bash command to execute"))
-  :guard (lambda (args context)
-           (declare (ignore context))
-           (let ((cmd (getf args :cmd)))
-             (not (or (search "rm -rf /" cmd) (search ":(){ :|:& };:" cmd)))))
-  :body (lambda (args)
-          (let ((cmd (getf args :cmd)))
-            (multiple-value-bind (out err code)
-                (uiop:run-program (list "bash" "-c" cmd) :output :string :error-output :string :ignore-error-status t)
-              (format nil "EXIT-CODE: ~a~%~%STDOUT:~%~a~%~%STDERR:~%~a" code out err)))))
-
-(def-cognitive-tool :reload-skill "Reloads a skill from its Org-mode source file, recompiling into the live image without restarting the daemon."
-  ((:skill :type :string :description "The skill name (e.g., \"org-skill-policy\") or full path to the .org file"))
-  :guard (lambda (args context)
-           (declare (ignore context))
-           (let ((skill (getf args :skill)))
-             (or (uiop:file-exists-p skill)
-                 (let ((skills-dir (or (ignore-errors (uiop:getenv "SKILLS_DIR"))
-                                       (namestring (merge-pathnames "notes/" (user-homedir-pathname))))))
-                   (uiop:file-exists-p (merge-pathnames (format nil "~a.org" skill) skills-dir))))))
-  :body (lambda (args)
-          (let ((skill (getf args :skill)))
-            (snapshot-memory)
-            (let ((skills-dir (or (ignore-errors (uiop:getenv "SKILLS_DIR"))
-                                  (namestring (merge-pathnames "notes/" (user-homedir-pathname)))))
-                 (resolved-path (context-resolve-path skills-dir))
-                 (skills-dir-actual (if (ignore-errors (uiop:getenv "SKILLS_DIR"))
-                                        (uiop:ensure-directory-pathname (context-resolve-path (uiop:getenv "SKILLS_DIR")))
-                                        (uiop:ensure-directory-pathname (user-homedir-pathname)))))
-              (let ((file (if (uiop:file-exists-p skill)
-                             (uiop:ensure-pathname skill)
-                             (merge-pathnames (format nil "~a.org" skill) skills-dir-actual))))
-                (cond
-                  ((not (uiop:file-exists-p file))
-                   (format nil "ERROR: Skill file not found: ~a" (uiop:native-namestring file)))
-                  (t
-                   (harness-log "SKILL: Hot-reloading ~a..." (pathname-name file))
-                   (let ((status (load-skill-with-timeout file 10)))
-                     (if (eq status :success)
-                         (let ((base-name (pathname-name file)))
-                           (setf (skill-entry-status (gethash base-name *skill-catalog*)) :ready)
-                           (format nil "OK: Skill '~a' reloaded successfully." base-name))
-                         (format nil "ERROR: Reload failed with status ~a" status))))))))))
-
-(def-cognitive-tool :read-file "Reads the contents of a file as a string."
-  ((:file :type :string :description "The path to the file to read"))
-  :guard (lambda (args context)
-           (declare (ignore context))
-           (let* ((file (getf args :file))
-                  (memex-root (or (uiop:getenv "MEMEX_DIR") "/home/user/memex"))
-                  (abs-path (namestring (uiop:ensure-absolute-pathname file (uiop:getcwd)))))
-             (and (str:starts-with-p memex-root abs-path)
-                  (not (search ".." abs-path)))))
-  :body (lambda (args)
-          (let ((file (getf args :file)))
-            (handler-case
-                (uiop:read-file-string file)
-              (error (c)
-                (format nil "ERROR reading ~a: ~a" file c))))))
-
-(def-cognitive-tool :write-file "Writes content to a file, creating it if it doesn't exist."
-  ((:file :type :string :description "The path to the file to write")
-   (:content :type :string :description "The content to write")
-   (:append :type :string :description "\"t\" to append instead of overwriting (optional)"))
-  :guard (lambda (args context)
-           (declare (ignore context))
-           (let* ((file (getf args :file))
-                  (memex-root (or (uiop:getenv "MEMEX_DIR") "/home/user/memex"))
-                  (abs-path (namestring (uiop:ensure-absolute-pathname file (uiop:getcwd)))))
-             (and (str:starts-with-p memex-root abs-path)
-                  (not (search ".." abs-path))
-                  (not (str:ends-with-p ".org" abs-path))))) ;; Force AST tools for .org files
-  :body (lambda (args)
-          (let ((file (getf args :file))
-                (content (getf args :content))
-                (append-p (string-equal (getf args :append) "t")))
-            (handler-case
-                (progn
-                  (snapshot-memory)
-                  (with-open-file (out file
-                                      :direction :output
-                                      :if-exists (if append-p :append :supersede)
-                                      :if-does-not-exist :create)
-                    (write-string content out))
-                  (format nil "OK: ~a written to ~a" 
-                          (if append-p "content appended" "file written")
-                          file))
-              (error (c)
-                (format nil "ERROR writing ~a: ~a" file c))))))
-
-(def-cognitive-tool :replace-string "Replaces occurrences of old-string with new-string in a file."
-  ((:file :type :string :description "The path to the file")
-   (:old :type :string :description "The substring to find and replace")
-   (:new :type :string :description "The replacement string"))
-  :guard (lambda (args context)
-           (declare (ignore context))
-           (let* ((file (getf args :file))
-                  (memex-root (or (uiop:getenv "MEMEX_DIR") "/home/user/memex"))
-                  (abs-path (namestring (uiop:ensure-absolute-pathname file (uiop:getcwd)))))
-             (and (str:starts-with-p memex-root abs-path)
-                  (not (search ".." abs-path))
-                  (not (str:ends-with-p ".org" abs-path))))) ;; Force AST tools for .org files
-  :body (lambda (args)
-          (let ((file (getf args :file))
-                (old (getf args :old))
-                (new (getf args :new)))
-            (handler-case
-                (progn
-                  (snapshot-memory)
-                  (let ((content (uiop:read-file-string file)))
-                    (if (search old content)
-                        (let ((new-content (cl-ppcre:regex-replace-all (cl-ppcre:quote-meta-chars old) content new)))
-                          (with-open-file (out file :direction :output :if-exists :supersede)
-                            (write-string new-content out))
-                          (format nil "OK: Replaced first occurrence in ~a" file))
-                        (format nil "ERROR: Pattern not found in ~a" file))))
-              (error (c)
-                (format nil "ERROR replacing in ~a: ~a" file c))))))

harness/tui-client.lisp

@@ -1,130 +0,0 @@
-(in-package :cl-user)
-
-(defpackage :opencortex.tui
-  (:use :cl :croatoan)
-  (:export :main))
-
-(in-package :opencortex.tui)
-
-(defvar *daemon-host* "127.0.0.1")
-
-(defvar *daemon-port* 9105)
-
-(defvar *socket* nil)
-
-(defvar *stream* nil)
-
-(defvar *chat-history* (list) "Full chronological log of messages.")
-
-(defvar *scroll-index* 0 "Offset for history rendering.")
-
-(defvar *status-text* "Connecting...")
-
-(defvar *input-buffer* (make-array 0 :element-type 'char :fill-pointer 0 :adjustable t))
-
-(defvar *command-history* (make-array 0 :element-type 't :fill-pointer 0 :adjustable t))
-
-(defvar *history-index* -1)
-
-(defvar *is-running* t)
-
-(defvar *queue-lock* (bt:make-lock))
-
-(defvar *incoming-msgs* nil)
-
-(defun enqueue-msg (msg)
-  "Thread-safe addition to incoming message queue."
-  (bt:with-lock-held (*queue-lock*)
-    (push msg *incoming-msgs*)))
-
-(defun dequeue-msgs ()
-  "Thread-safe retrieval of incoming messages."
-  (bt:with-lock-held (*queue-lock*)
-    (let ((msgs (nreverse *incoming-msgs*)))
-      (setf *incoming-msgs* nil)
-      msgs)))
-
-(defun get-line-style (text)
-  "Determines croatoan attributes based on content patterns."
-  (cond
-    ((uiop:string-prefix-p "*" text) '(:bold :yellow))
-    ((uiop:string-prefix-p "⬆" text) '(:cyan))
-    ((uiop:string-prefix-p "🤔" text) '(:italic))
-    ((uiop:string-prefix-p "ERROR" text) '(:bold :red))
-    (t nil)))
-
-(defun render-chat (win)
-  "Renders the chat history with scrolling and styling."
-  (clear win)
-  (let* ((h (height win))
-         (view-height (- h 2))
-         (history-len (length *chat-history*))
-         (start-idx *scroll-index*)
-         (end-idx (min history-len (+ start-idx view-height)))
-         (slice (reverse (subseq *chat-history* start-idx end-idx))))
-    (loop for msg in slice
-          for i from 1
-          do (let ((style (get-line-style msg)))
-               (add-string win (format nil "│ ~a" msg) :y i :x 1 :attributes style)))
-    (refresh win)))
-
-(defun handle-backspace ()
-  "Deletes last character from input buffer."
-  (when (> (fill-pointer *input-buffer*) 0)
-    (decf (fill-pointer *input-buffer*))))
-
-(defun handle-return (stream)
-  "Process input buffer as message or command."
-  (let ((cmd (coerce *input-buffer* 'string)))
-    (setf (fill-pointer *input-buffer*) 0)
-    (when (> (length cmd) 0)
-      (enqueue-msg (format nil "⬆ ~a" cmd))
-      (handler-case
-          (when (and stream (open-stream-p stream))
-            (format stream "~a" (opencortex:frame-message (list :TYPE :EVENT 
-                                                               :META (list :SOURCE :tui)
-                                                               :PAYLOAD (list :SENSOR :user-input :TEXT cmd))))
-            (finish-output stream))
-        (error (c)
-          (push "ERROR: Connection to daemon lost." *chat-history*)
-          (setf *is-running* nil))))
-    (when (string= cmd "/exit") (setf *is-running* nil))
-    (when (string= cmd "/clear") (setf *chat-history* nil))))
-
-(defun main ()
-  "Initializes ncurses and starts the TUI event loop."
-  (handler-case
-      (setf *socket* (usocket:socket-connect *daemon-host* *daemon-port*))
-    (error (e) (format t "Offline: ~a~%" e) (return-from main)))
-  (setf *stream* (usocket:socket-stream *socket*))
-  
-  (unwind-protect
-      (with-screen (scr :input-echoing nil :input-blocking nil :enable-colors t)
-        (let* ((h (height scr)) (w (width scr)))
-          (unless (and h w)
-             (error "Screen dimensions are NIL: h=~a, w=~a" h w))
-          (let ((chat-win (make-instance 'window :height (- h 5) :width (- w 2) :position '(1 1) :border t))
-                (input-win (make-instance 'window :height 1 :width (- w 2) :position (list (- h 2) 1) :border t)))
-          
-          (setf (input-blocking input-win) nil)
-          
-          (loop :while *is-running* :do
-            (let ((msgs (dequeue-msgs)))
-              (when msgs 
-                (dolist (m msgs) (push m *chat-history*))
-                (render-chat chat-win)))
-            
-            (let* ((ev (get-event input-win))
-                   (ch (when (and ev (typep ev 'event)) (event-key ev))))
-              (when ch
-                (cond
-                  ((or (eq ch #\Newline) (eq ch #\Return)) (handle-return *stream*))
-                  ((or (eq ch :backspace) (eq ch (code-char 127))) (handle-backspace))
-                  ((characterp ch) (vector-push-extend ch *input-buffer*))))
-              
-              (clear input-win)
-              (add-string input-win (format nil "▶ ~a" (coerce *input-buffer* 'string)) :y 0 :x 1)
-              (refresh input-win))
-            (sleep 0.02)))))
-    (setf *is-running* nil)
-    (when *socket* (ignore-errors (usocket:socket-close *socket*)))))

harness/tui-client.org

@@ -1,161 +0,0 @@
-#+TITLE: OpenCortex TUI Client (Standalone)
-#+STARTUP: content
-#+FILETAGS: :tui:ux:client:
-#+PROPERTY: header-args:lisp :tangle tui-client.lisp
-
-* Overview
-The OpenCortex TUI Client is a standalone Common Lisp application built on **Croatoan**.
-
-* Test Suite
-#+begin_src lisp :tangle ../tests/tui-tests.lisp
-(defpackage :opencortex-tui-tests
-  (:use :cl :opencortex)
-  (:export #:tui-suite))
-
-(in-package :opencortex-tui-tests)
-
-(eval-when (:compile-toplevel :load-toplevel :execute)
-  (ql:quickload :fiveam :silent t))
-
-(fiveam:def-suite tui-suite :description "Verification of the TUI parsing and styling logic")
-(fiveam:in-suite tui-suite)
-
-(fiveam:test test-tui-connection-drop
-  "Tier 2 Chaos: Verify that handle-return degrades gracefully when the daemon connection is lost."
-  (let ((opencortex.tui::*incoming-msgs* nil)
-        (opencortex.tui::*input-buffer* (make-array 5 :element-type 'char :initial-contents "hello" :fill-pointer 5 :adjustable t))
-        ;; Create a closed stream to simulate connection drop
-        (mock-stream (make-string-output-stream)))
-    (close mock-stream)
-    (opencortex.tui::handle-return mock-stream)
-    ;; Check if the error was enqueued to history instead of crashing
-    (fiveam:is (member "ERROR: Connection to daemon lost." opencortex.tui::*incoming-msgs* :test #'string=))))
-#+end_src
-
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :cl-user)
-(defpackage :opencortex.tui
-  (:use :cl :croatoan :usocket)
-  (:export :main))
-(in-package :opencortex.tui)
-#+end_src
-
-** Global State
-#+begin_src lisp
-(defvar *daemon-host* "127.0.0.1")
-(defvar *daemon-port* 9105)
-(defvar *socket* nil)
-(defvar *stream* nil)
-(defvar *chat-history* nil)
-(defvar *scroll-index* 0)
-(defvar *input-buffer* (make-array 0 :element-type 'char :fill-pointer 0 :adjustable t))
-(defvar *is-running* t)
-(defvar *queue-lock* (bt:make-lock))
-(defvar *incoming-msgs* nil)
-#+end_src
-
-** Utilities
-#+begin_src lisp
-(defun enqueue-msg (msg)
-  "Thread-safe addition to incoming message queue."
-  (bt:with-lock-held (*queue-lock*)
-    (setf *incoming-msgs* (append *incoming-msgs* (list msg)))))
-
-(defun dequeue-msgs ()
-  "Thread-safe retrieval of incoming messages."
-  (bt:with-lock-held (*queue-lock*)
-    (let ((msgs *incoming-msgs*))
-      (setf *incoming-msgs* nil)
-      msgs)))
-
-(defun get-line-style (text)
-  (cond
-    ((uiop:string-prefix-p "*" text) '(:bold :yellow))
-    ((uiop:string-prefix-p "⬆" text) '(:cyan))
-    ((uiop:string-prefix-p "🤔" text) '(:italic))
-    ((uiop:string-prefix-p "ERROR" text) '(:bold :red))
-    (t nil)))
-#+end_src
-
-** Rendering
-#+begin_src lisp
-(defun render-chat (win)
-  (clear win)
-  (let* ((h (height win))
-         (view-height (max 0 (- h 2)))
-         (history-len (length *chat-history*))
-         (start-idx *scroll-index*)
-         (end-idx (min history-len (+ start-idx view-height)))
-         (slice (reverse (subseq *chat-history* start-idx end-idx))))
-    (loop for msg in slice
-          for i from 1
-          do (add-string win (format nil "│ ~a" msg) :y i :x 1 :attributes (get-line-style msg)))
-    (refresh win)))
-#+end_src
-
-** Input Handling
-#+begin_src lisp
-(defun handle-backspace ()
-  (when (> (fill-pointer *input-buffer*) 0)
-    (decf (fill-pointer *input-buffer*))))
-
-(defun handle-return (stream)
-  (let ((cmd (coerce *input-buffer* 'string)))
-    (setf (fill-pointer *input-buffer*) 0)
-    (when (> (length cmd) 0)
-      (enqueue-msg (format nil "⬆ ~a" cmd))
-      (handler-case
-          (progn
-            (when (and stream (open-stream-p stream))
-              (let* ((msg (list :TYPE :EVENT 
-                               :META (list :SOURCE :tui)
-                               :PAYLOAD (list :SENSOR :user-input :TEXT cmd)))
-                     (payload (format nil "~s" msg))
-                     (len (length payload)))
-                (format stream "~6,'0x~a" len payload)
-                (finish-output stream)))
-            (enqueue-msg "✓ Sent"))
-        (error (c)
-          (format t "Send error: ~a~%" c)
-          (enqueue-msg "ERROR: Connection to daemon lost.")
-          (setf *is-running* nil))))
-    (when (string= cmd "/exit") (setf *is-running* nil))
-    (when (string= cmd "/clear") (setf *chat-history* nil))))
-#+end_src
-
-** Main Entry Point
-#+begin_src lisp
-(defun main ()
-  (handler-case
-      (setf *socket* (usocket:socket-connect *daemon-host* *daemon-port*))
-    (error (e) (format t "Offline: ~a~%" e) (return-from main)))
-  (setf *stream* (usocket:socket-stream *socket*))
-  
-  (unwind-protect
-      (with-screen (scr :input-echoing nil :input-blocking nil :enable-colors t)
-        (let* ((h (height scr)) (w (width scr)))
-          (let ((chat-win (make-instance 'window :height (- h 5) :width (- w 2) :position '(1 1) :border t))
-                (input-win (make-instance 'window :height 1 :width (- w 2) :position (list (- h 2) 1) :border t)))
-          (setf (input-blocking input-win) nil)
-          (loop :while *is-running* :do
-            (let ((msgs (dequeue-msgs)))
-              (when msgs 
-                (dolist (m msgs) (push m *chat-history*))
-                (render-chat chat-win)))
-            (let* ((ev (get-event input-win))
-                   (ch (when (and ev (typep ev 'event)) (event-key ev))))
-              (when ch
-                (cond
-                  ((or (eq ch #\Newline) (eq ch #\Return)) (handle-return *stream*))
-                  ((or (eq ch :backspace) (eq ch (code-char 127))) (handle-backspace))
-                  ((characterp ch) (vector-push-extend ch *input-buffer*))))
-              (clear input-win)
-              (add-string input-win (format nil "▶ ~a" (coerce *input-buffer* 'string)) :y 0 :x 1)
-              (refresh input-win))
-            (sleep 0.02)))))
-    (setf *is-running* nil)
-    (when *socket* (ignore-errors (usocket:socket-close *socket*)))))
-#+end_src

infrastructure/docker/Dockerfile

@@ -1,32 +1,23 @@
-FROM debian:bullseye-slim
+FROM debian:trixie-slim
 
 ENV DEBIAN_FRONTEND=noninteractive
 
 RUN apt-get update && apt-get install -y \
-    sbcl \
-    emacs-nox \
-    curl \
-    git \
-    socat \
-    netcat-openbsd \
-    libssl-dev \
-    libncurses5-dev \
-    libffi-dev \
-    zlib1g-dev \
-    libsqlite3-dev \
+    sbcl emacs-nox curl git socat netcat-openbsd rlwrap \
+    libssl-dev libncurses-dev libffi-dev zlib1g-dev libsqlite3-dev \
     && rm -rf /var/lib/apt/lists/*
 
-# Install Quicklisp
 RUN curl -O https://beta.quicklisp.org/quicklisp.lisp \
-    && sbcl --non-interactive --load quicklisp.lisp --eval "(quicklisp-quickstart:install)" --eval "(ql-util:without-prompting (ql:add-to-init-file))" \
+    && sbcl --non-interactive --load quicklisp.lisp \
+        --eval "(quicklisp-quickstart:install)" \
+        --eval "(ql-util:without-prompting (ql:add-to-init-file))" \
     && rm quicklisp.lisp
 
 WORKDIR /app
 COPY . .
 
-# Initialize system in non-interactive mode
-RUN mkdir -p /root/memex && ./opencortex.sh setup --non-interactive
+RUN mkdir -p /root/memex && ./opencortex.sh configure --non-interactive
 
 EXPOSE 9105
 
-CMD ["./opencortex.sh", "boot"]
+CMD ["./opencortex.sh", "daemon"]

infrastructure/docker/docker-compose.yml

@@ -1,18 +1,15 @@
 services:
-  opencortex:
+  passepartout:
     build:
-      context: .
-      dockerfile: Dockerfile
-    container_name: opencortex
-    env_file: .env
+      context: ../../
+      dockerfile: infrastructure/docker/Dockerfile
+    container_name: passepartout
+    env_file: ../../.env
     volumes:
-      # Mount the entire memex directory (2 levels up from projects/opencortex)
-      - ../..:/memex
-      # Ensure signal-cli state is preserved
+      - ../../../..:/memex
       - signal-state:/root/.local/share/signal-cli
     ports:
       - "${ORG_AGENT_DAEMON_PORT:-9105}:9105"
-      - "${ORG_AGENT_WEB_PORT:-8080}:8080"
     restart: unless-stopped
 
 volumes:

infrastructure/opencortex.service

@@ -0,0 +1,15 @@
+[Unit]
+Description=OpenCortex Daemon
+Documentation=https://github.com/amrgharbeia/opencortex
+After=network.target
+
+[Service]
+Type=simple
+User=%u
+ExecStart=%h/projects/passepartout/opencortex.sh daemon
+Restart=on-failure
+RestartSec=10
+WorkingDirectory=%h/projects/passepartout
+
+[Install]
+WantedBy=default.target

infrastructure/passepartout.service

@@ -0,0 +1,15 @@
+[Unit]
+Description=Passepartout Daemon
+Documentation=https://github.com/amrgharbeia/opencortex
+After=network.target
+
+[Service]
+Type=simple
+User=%u
+ExecStart=%h/projects/passepartout/passepartout daemon
+Restart=on-failure
+RestartSec=10
+WorkingDirectory=%h/projects/passepartout
+
+[Install]
+WantedBy=default.target

lisp/core-communication.lisp

@@ -1,46 +1,27 @@
-#+TITLE: Communication Protocol (communication.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:protocol:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle communication.lisp
+(in-package :passepartout)
 
-* Overview
-The ~communication.lisp~ module defines the low-level transport and framing logic for OpenCortex stimuli.
-
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Actuator Registry
-#+begin_src lisp
 (defvar *actuator-registry* (make-hash-table :test 'equalp)
   "Global registry mapping target keywords to their physical actuator functions.")
 
-(defun register-actuator (name fn) 
+(defun actuator-register (name fn) 
   "Registers an actuator function. Actuators receive: (ACTION CONTEXT)."
   (let ((key (if (keywordp name) name (intern (string-upcase (string name)) :keyword))))
     (setf (gethash key *actuator-registry*) fn)))
-#+end_src
 
-** Message Framing
-#+begin_src lisp
-(defun sanitize-protocol-message (msg)
+(defun protocol-message-sanitize (msg)
   "Recursively strips non-serializable objects from a protocol plist."
   (if (and msg (listp msg))
       (let ((clean nil))
         (loop for (k v) on msg by #'cddr
               do (unless (member k '(:reply-stream :socket :stream))
                    (push k clean)
-                   (push (if (listp v) (sanitize-protocol-message v) v) clean)))
+                   (push (if (listp v) (protocol-message-sanitize v) v) clean)))
         (nreverse clean))
       msg))
 
 (defun frame-message (msg)
   "Serializes a message plist and prefixes it with a 6-character hex length."
-  (let* ((sanitized (sanitize-protocol-message msg))
+  (let* ((sanitized (protocol-message-sanitize msg))
          (payload (let ((*print-pretty* nil) (*read-eval* nil)) (format nil "~s" sanitized)))
          (len (length payload)))
     (format nil "~6,'0x~a" len payload)))
@@ -65,13 +46,10 @@ The ~communication.lisp~ module defines the low-level transport and framing logi
                           (handler-case (read-from-string msg-buffer)
                             (error () :error)))))))))
       (error () :error))))
-#+end_src
 
-** Server Listener (start-daemon)
-#+begin_src lisp
-(defvar *server-socket* nil)
+(defvar *daemon-socket* nil)
 
-(defun handle-client-connection (socket)
+(defun client-handle-connection (socket)
   "Handles a single TUI/CLI client connection in a dedicated thread."
   (let ((stream (usocket:socket-stream socket)))
     (handler-case
@@ -84,66 +62,56 @@ The ~communication.lisp~ module defines the low-level transport and framing logi
                 ((eq msg :eof) (return))
                 ((eq msg :error) (return))
                 ((eq (getf msg :type) :health-check)
-                 ;; Handle health check request
                  (let ((health-msg (list :type :health-response 
-                                          :status (or (and (boundp 'opencortex::*system-health*) 
-                                                          (symbol-value 'opencortex::*system-health*))
-                                                      :unknown)
-                                          :checked-p (or (and (boundp 'opencortex::*health-check-ran*)
-                                                              (symbol-value 'opencortex::*health-check-ran*))
-                                                      nil))))
+                                         :status (or (and (boundp 'passepartout::*system-health*) 
+                                                         (symbol-value 'passepartout::*system-health*))
+                                                     :unknown)
+                                         :checked-p (or (and (boundp 'passepartout::*health-check-ran*)
+                                                             (symbol-value 'passepartout::*health-check-ran*))
+                                                     nil))))
                    (format stream "~a" (frame-message health-msg))
                    (finish-output stream)))
                 (t (inject-stimulus msg :stream stream))))))
-      (error (c) (harness-log "CLIENT ERROR: ~a" c)))
+      (error (c) (log-message "CLIENT ERROR: ~a" c)))
     (ignore-errors (usocket:socket-close socket))))
 
 (defun start-daemon (&key (port 9105))
   "Starts the network listener for TUI/CLI clients."
-  (setf *server-socket* (usocket:socket-listen "127.0.0.1" port :reuse-address t))
-  (harness-log "DAEMON: Listening on localhost:~a" port)
+  (setf *daemon-socket* (usocket:socket-listen "127.0.0.1" port :reuse-address t))
+  (log-message "DAEMON: Listening on localhost:~a" port)
   (bt:make-thread
    (lambda ()
      (loop
-       (let ((client-socket (usocket:socket-accept *server-socket*)))
+       (let ((client-socket (usocket:socket-accept *daemon-socket*)))
          (when client-socket
-           (bt:make-thread (lambda () (handle-client-connection client-socket))
-                          :name "opencortex-client-handler")))))
-   :name "opencortex-server-listener"))
-#+end_src
+           (bt:make-thread (lambda () (client-handle-connection client-socket))
+                          :name "passepartout-client-handler")))))
+   :name "passepartout-server-listener"))
 
-** Handshake Logic
-#+begin_src lisp
 (defun make-hello-message (version)
   "Constructs the standard HELLO handshake message."
   (list :TYPE :EVENT 
         :PAYLOAD (list :ACTION :handshake 
                        :VERSION version 
                        :CAPABILITIES '(:AUTH :ORG-AST))))
-#+end_src
 
-** Structural Validation
-#+begin_src lisp :tangle communication-validator.lisp
-(in-package :opencortex)
+(in-package :passepartout)
 
-(defun validate-communication-protocol-schema (msg)
+(defun protocol-schema-validate (msg)
   "Strict structural validation for incoming protocol messages."
   (unless (listp msg) (error "Message must be a plist"))
   (let ((type (proto-get msg :type)))
     (unless (member type '(:REQUEST :EVENT :RESPONSE :LOG :STATUS))
       (error "Invalid message type '~a'" type))
     t))
-#+end_src
 
-* Test Suite
-#+begin_src lisp :tangle ../tests/communication-tests.lisp
 (eval-when (:compile-toplevel :load-toplevel :execute)
   (ql:quickload :fiveam :silent t))
 
-(defpackage :opencortex-communication-tests
-  (:use :cl :fiveam :opencortex)
+(defpackage :passepartout-communication-tests
+  (:use :cl :fiveam :passepartout)
   (:export #:communication-protocol-suite))
-(in-package :opencortex-communication-tests)
+(in-package :passepartout-communication-tests)
 
 (def-suite communication-protocol-suite :description "Communication Protocol Suite")
 (in-suite communication-protocol-suite)
@@ -152,4 +120,3 @@ The ~communication.lisp~ module defines the low-level transport and framing logi
   (let* ((msg '(:type :EVENT :payload (:action :handshake)))
          (framed (frame-message msg)))
     (is (string= "00002C" (string-upcase (subseq framed 0 6))))))
-#+end_src

lisp/core-context.lisp

@@ -1,22 +1,6 @@
-#+TITLE: Context API (context.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:context:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle context.lisp
+(in-package :passepartout)
 
-* Overview
-The *Context API* (Peripheral Vision) provides the opencortex with the ability to selectively prune and present its memory to the LLM. It implements a **Foveal-Peripheral model**, where the current task is shown in high detail (foveal), while the broader Memex structure is shown as a skeletal outline (peripheral).
-
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Memory Query (context-query-store)
-#+begin_src lisp
-(defun context-query-store (&key tag todo-state type)
+(defun context-query (&key tag todo-state type)
   "Filters the Memory based on tags, todo states, or types."
   (let ((results nil))
     (maphash (lambda (id obj)
@@ -28,26 +12,17 @@ The *Context API* (Peripheral Vision) provides the opencortex with the ability t
                  (when match (push obj results))))
              *memory*)
     results))
-#+end_src
 
-** Active Projects (context-get-active-projects)
-#+begin_src lisp
-(defun context-get-active-projects ()
+(defun context-active-projects ()
   "Returns headlines tagged as 'project' that are not yet marked DONE."
   (remove-if (lambda (obj) (equal (getf (org-object-attributes obj) :TODO-STATE) "DONE"))
-             (context-query-store :tag "project" :type :HEADLINE)))
-#+end_src
+             (context-query :tag "project" :type :HEADLINE)))
 
-** Completed Tasks (context-get-recent-completed-tasks)
-#+begin_src lisp
-(defun context-get-recent-completed-tasks () 
+(defun context-recent-tasks () 
   "Retrieves recently finished tasks from the store."
-  (context-query-store :todo-state "DONE" :type :HEADLINE))
-#+end_src
+  (context-query :todo-state "DONE" :type :HEADLINE))
 
-** Capability Discovery (context-list-all-skills)
-#+begin_src lisp
-(defun context-list-all-skills ()
+(defun context-skill-list ()
   "Provides a sorted overview of currently loaded system capabilities."
   (let ((results nil))
     (maphash (lambda (name skill)
@@ -55,32 +30,23 @@ The *Context API* (Peripheral Vision) provides the opencortex with the ability t
                (push (list :name (skill-name skill) :priority (skill-priority skill) :dependencies (skill-dependencies skill)) results))
              *skills-registry*)
     (sort results #'> :key (lambda (x) (getf x :priority)))))
-#+end_src
 
-** Skill Inspection (context-get-skill-source)
-#+begin_src lisp
-(defun context-get-skill-source (skill-name)
+(defun context-skill-source (skill-name)
   "Reads the raw literate source of a specific skill for inspection."
   (let* ((filename (format nil "~a.org" skill-name))
-         (skills-dir-str (or (uiop:getenv "SKILLS_DIR") (namestring (merge-pathnames "notes/" (user-homedir-pathname)))))
-         (skills-dir (uiop:ensure-directory-pathname (context-resolve-path skills-dir-str)))
-         (full-path (merge-pathnames filename skills-dir)))
+         (data-dir (uiop:ensure-directory-pathname (or (uiop:getenv "PASSEPARTOUT_DATA_DIR") (namestring (merge-pathnames ".local/share/passepartout/" (user-homedir-pathname))))))
+         (org-dir (merge-pathnames "org/" data-dir))
+         (full-path (merge-pathnames filename org-dir)))
     (if (uiop:file-exists-p full-path) (uiop:read-file-string full-path) nil)))
-#+end_src
 
-** Harness Logs (context-get-system-logs)
-#+begin_src lisp
-(defun context-get-system-logs (&optional limit)
+(defun context-logs (&optional limit)
   "Retrieves the most recent lines from the harness's internal log."
   (let ((log-limit (or limit (ignore-errors (parse-integer (uiop:getenv "CONTEXT_LOG_LIMIT"))) 20)))
     (bt:with-lock-held (*logs-lock*)
       (let ((count (min log-limit (length *system-logs*)))) 
         (subseq *system-logs* 0 count)))))
-#+end_src
 
-** AST to Org Rendering (context-render-to-org)
-#+begin_src lisp
-(defun context-render-to-org (obj &key (depth 1) (foveal-id nil) semantic-threshold (foveal-vector nil))
+(defun context-object-render (obj &key (depth 1) (foveal-id nil) semantic-threshold (foveal-vector nil))
   "Recursively renders an org-object and its children to an Org string using a Foveal-Peripheral Hybrid model."
   (let* ((id (org-object-id obj))
          (is-foveal (equal id foveal-id))
@@ -111,17 +77,14 @@ The *Context API* (Peripheral Vision) provides the opencortex with the ability t
           (when child-obj
             (let ((next-foveal (if is-foveal child-id foveal-id)))
               (setf output (concatenate 'string output 
-                                        (context-render-to-org child-obj 
+                                        (context-object-render child-obj 
                                                                :depth (1+ depth) 
                                                                :foveal-id next-foveal
                                                                :semantic-threshold threshold
                                                                :foveal-vector foveal-vector))))))))
     output))
-#+end_src
 
-** Path Resolution (context-resolve-path)
-#+begin_src lisp
-(defun context-resolve-path (path-string)
+(defun context-path-resolve (path-string)
   "Expands environment variables and strips literal quotes from a path string."
   (let ((path (if (stringp path-string) 
                   (string-trim '(#\" #\' #\Space) path-string)
@@ -134,56 +97,67 @@ The *Context API* (Peripheral Vision) provides the opencortex with the ability t
                 (setf result (ppcre:regex-replace (format nil "\\$~a" var-name) result var-val)))))
           result)
         path)))
-#+end_src
 
-** Global Awareness (context-assemble-global-awareness)
-#+begin_src lisp
-(defun context-assemble-global-awareness (&optional signal)
-  "Produces a high-level skeletal outline of the current Memory for the LLM."
+(defun context-privacy-filtered-p (obj)
+  "Returns T if an org-object's :TAGS attribute matches bouncer-privacy-tags."
+  (let* ((attrs (org-object-attributes obj))
+         (tags (getf attrs :TAGS))
+         (privacy-tags (and (find-package :passepartout.security-dispatcher)
+                            (symbol-value
+                             (find-symbol "BOUNCER-PRIVACY-TAGS"
+                                          :passepartout.security-dispatcher)))))
+    (when (and tags privacy-tags)
+      (let ((tag-list (if (listp tags) tags (list tags))))
+        (some (lambda (tag)
+                (some (lambda (private)
+                        (string-equal (string-trim '(#\:) tag)
+                                      (string-trim '(#\:) private)))
+                      privacy-tags))
+              tag-list)))))
+
+(defun context-awareness-assemble (&optional signal)
+  "Produces a high-level skeletal outline of the current Memory for the LLM.
+Privacy-filtered objects (matching bouncer-privacy-tags) are excluded."
   (let* ((foveal-id (or (getf signal :foveal-focus) 
                         (ignore-errors (getf (getf signal :payload) :target-id))))
-         (projects (context-get-active-projects))
+         (all-projects (context-active-projects))
+         (projects (remove-if #'context-privacy-filtered-p all-projects))
          (output (format nil "GLOBAL MEMEX AWARENESS (Peripheral Vision):~%")))
     (if projects
         (dolist (project projects)
           (setf output (concatenate 'string output
-                                    (context-render-to-org project :foveal-id foveal-id))))
+                                    (context-object-render project :foveal-id foveal-id))))
         (setf output (concatenate 'string output "No active projects found.~%")))
     output))
-#+end_src
 
-* Test Suite
-
-#+begin_src lisp :tangle ../tests/peripheral-vision-tests.lisp
 (eval-when (:compile-toplevel :load-toplevel :execute)
   (ql:quickload :fiveam :silent t))
 
-(defpackage :opencortex-peripheral-vision-tests
-  (:use :cl :fiveam :opencortex)
+(defpackage :passepartout-peripheral-vision-tests
+  (:use :cl :fiveam :passepartout)
   (:export #:vision-suite))
-(in-package :opencortex-peripheral-vision-tests)
+(in-package :passepartout-peripheral-vision-tests)
 
 (def-suite vision-suite :description "Verification of Foveal-Peripheral context model.")
 (in-suite vision-suite)
 
 (test test-foveal-rendering
-  (clrhash opencortex::*memory*)
+  (clrhash passepartout::*memory*)
   (let* ((ast '(:type :HEADLINE :properties (:ID "proj-root" :TITLE "Project" :TAGS ("project"))
                 :contents ((:type :HEADLINE :properties (:ID "node-foveal" :TITLE "Foveal Node")
-                            :raw-content "FOVEAL CONTENT" :contents nil)
-                           (:type :HEADLINE :properties (:ID "node-peripheral" :TITLE "Peripheral Node")
-                            :raw-content "PERIPHERAL CONTENT" :contents nil)))))
+                             :raw-content "FOVEAL CONTENT" :contents nil)
+                            (:type :HEADLINE :properties (:ID "node-peripheral" :TITLE "Peripheral Node")
+                             :raw-content "PERIPHERAL CONTENT" :contents nil)))))
     (ingest-ast ast)
-    (let ((output (context-assemble-global-awareness (list :foveal-focus "node-foveal"))))
+    (let ((output (context-awareness-assemble (list :foveal-focus "node-foveal"))))
       (is (search "FOVEAL CONTENT" output))
       (is (search "* Peripheral Node" output))
       (is (not (search "PERIPHERAL CONTENT" output))))))
 
 (test test-awareness-budget
-  (clrhash opencortex::*memory*)
+  (clrhash passepartout::*memory*)
   (ingest-ast '(:type :HEADLINE :properties (:ID "p1" :TITLE "Project 1" :TAGS ("project")) :contents nil))
   (ingest-ast '(:type :HEADLINE :properties (:ID "p2" :TITLE "Project 2" :TAGS ("project")) :contents nil))
-  (let ((output (context-assemble-global-awareness)))
+  (let ((output (context-awareness-assemble)))
     (is (search "Project 1" output))
     (is (search "Project 2" output))))
-#+end_src

lisp/core-defpackage.lisp

@@ -1,20 +1,6 @@
-#+TITLE: System Interface (package.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:interface:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle package.lisp
-
-* Overview
-The ~package.lisp~ file defines the public API of the ~opencortex~ harness.
-
-* Implementation
-
-** Public API Export
-#+begin_src lisp :tangle package.lisp
-(defpackage :opencortex
+(defpackage :passepartout
   (:use :cl)
   (:export
-   ;; --- communication protocol ---
    #:frame-message
    #:read-framed-message
    #:PROTO-GET
@@ -25,30 +11,20 @@ The ~package.lisp~ file defines the public API of the ~opencortex~ harness.
    #:parse-message
    #:make-hello-message
    #:validate-communication-protocol-schema
-
-   ;; --- Daemon Lifecycle ---
    #:start-daemon
    #:stop-daemon
-   #:harness-log
+   #:log-message
    #:main
-
-   ;; --- Diagnostic Doctor ---
    #:doctor-run-all
    #:doctor-main
    #:doctor-check-dependencies
    #:doctor-check-env
-
-   ;; --- Setup Wizard ---
    #:register-provider
    #:system-ready-p
    #:run-setup-wizard
-
-   ;; --- Gateway Manager Skill ---
    #:skill-gateway-register
    #:skill-gateway-link
    #:gateway-manager-main
-
-   ;; --- Memory (CLOSOS) ---
    #:ingest-ast
    #:lookup-object
    #:list-objects-by-type
@@ -69,8 +45,6 @@ The ~package.lisp~ file defines the public API of the ~opencortex~ harness.
    #:org-object-hash
    #:snapshot-memory
    #:rollback-memory
-
-   ;; --- Context API (Peripheral Vision) ---
    #:context-query-store
    #:context-get-active-projects
    #:context-get-recent-completed-tasks
@@ -79,31 +53,27 @@ The ~package.lisp~ file defines the public API of the ~opencortex~ harness.
    #:context-get-system-logs
    #:context-resolve-path
    #:context-get-skill-telemetry
-   #:harness-track-telemetry
+   #:telemetry-track
    #:context-assemble-global-awareness
-
-   ;; --- Reactive Signal Pipeline ---
-   #:process-signal
+   #:loop-process
+   #:loop-process
    #:perceive-gate
    #:probabilistic-gate
    #:consensus-gate
    #:act-gate
    #:reason-gate
-   #:perceive-gate
    #:dispatch-gate
    #:inject-stimulus
    #:initialize-actuators
    #:dispatch-action
    #:register-actuator
-
-   ;; --- Skill Engine ---
    #:load-skill-from-org
-   #:initialize-all-skills
+   #:skill-initialize-all
    #:load-skill-with-timeout
    #:topological-sort-skills
    #:validate-lisp-syntax
    #:defskill
-   #:*skills-registry*
+   #:*skill-registry*
    #:skill
    #:skill-name
    #:skill-priority
@@ -111,45 +81,40 @@ The ~package.lisp~ file defines the public API of the ~opencortex~ harness.
    #:skill-trigger-fn
    #:skill-probabilistic-prompt
    #:skill-deterministic-fn
-
-   ;; --- Tool Registry ---
    #:def-cognitive-tool
-   #:*cognitive-tools*
-
-   ;; --- Engineering Standards Skill ---
+   #:*cognitive-tool-registry*
    #:verify-git-clean-p
-
-   ;; --- Literate Programming Skill ---
+   #:engineering-standards-verify-lisp
+   #:engineering-standards-format-lisp
    #:literate-check-block-balance
    #:check-tangle-sync
    #:*tangle-targets*
-
-   ;; --- Emacs Edit Skill ---
-   #:emacs-edit-read-file
-   #:emacs-edit-write-file
-   #:emacs-edit-add-headline
-   #:emacs-edit-set-property
-   #:emacs-edit-set-todo
-   #:emacs-edit-find-headline-by-id
-   #:emacs-edit-find-headline-by-title
-   #:emacs-edit-generate-id
-   #:emacs-edit-id-format
-   #:emacs-edit-ast-to-org
-   #:emacs-edit-modify
-
-   ;; --- Lisp Utils Skill ---
-   #:lisp-utils-validate
-   #:lisp-utils-check-structural
-   #:lisp-utils-check-syntactic
-   #:lisp-utils-check-semantic
-   #:lisp-utils-register
-
-   ;; --- Config Manager & Diagnostics Skill ---
+   #:utils-org-read-file
+   #:utils-org-write-file
+   #:utils-org-add-headline
+   #:utils-org-set-property
+   #:utils-org-set-todo
+   #:utils-org-find-headline-by-id
+   #:utils-org-find-headline-by-title
+   #:utils-org-generate-id
+   #:utils-org-id-format
+   #:utils-org-ast-to-org
+   #:utils-org-modify
+   #:utils-lisp-validate
+   #:utils-lisp-check-structural
+   #:utils-lisp-check-syntactic
+   #:utils-lisp-check-semantic
+   #:utils-lisp-eval
+   #:utils-lisp-format
+   #:utils-lisp-list-definitions
+   #:utils-lisp-structural-extract
+   #:utils-lisp-structural-wrap
+   #:utils-lisp-structural-inject
+   #:utils-lisp-structural-slurp
+   #:utils-lisp-register
    #:get-oc-config-dir
    #:prompt-for
    #:save-secret
-
-   ;; --- Tool Permissions Skill ---
    #:get-tool-permission
    #:set-tool-permission
    #:check-tool-permission-gate
@@ -159,63 +124,51 @@ The ~package.lisp~ file defines the public API of the ~opencortex~ harness.
    #:cognitive-tool-parameters
    #:cognitive-tool-guard
    #:cognitive-tool-body
-
-   ;; --- Emacs Client Registry ---
    #:*emacs-clients*
    #:*clients-lock*
    #:register-emacs-client
    #:unregister-emacs-client
-
-   ;; --- Probabilistic Engine ---
    #:ask-probabilistic
    #:register-probabilistic-backend
    #:distill-prompt
+   #:*probabilistic-backends*
    #:*provider-cascade*
-
-   ;; --- Security Vault ---
    #:vault-get-secret
    #:vault-set-secret
-
-   ;; --- Deterministic Logic ---
-   #:list-objects-with-attribute
+   #:memory-objects-by-attribute
    #:deterministic-verify
-
-   ;; --- AST Helpers ---
    #:find-headline-missing-id))
-#+end_src
 
-** Package Implementation
-#+begin_src lisp :tangle package.lisp
-(in-package :opencortex)
+(in-package :passepartout)
 
-(defun proto-get (plist key)
-  "Robustly retrieves a value from a plist, checking both uppercase and lowercase keyword versions."
+(defun plist-get (plist key)
+  "Robust plist accessor — checks both :KEY and :key variants."
   (let* ((s (string key))
          (up (intern (string-upcase s) :keyword))
          (dn (intern (string-downcase s) :keyword)))
     (or (getf plist up) (getf plist dn))))
 
-(defvar *system-logs* nil)
-(defvar *logs-lock* (bordeaux-threads:make-lock "harness-logs-lock"))
-(defvar *max-log-history* 100)
+(defvar *log-buffer* nil)
+(defvar *log-lock* (bordeaux-threads:make-lock "log-messages-lock"))
+(defvar *log-limit* 100)
 
-(defvar *skills-registry* (make-hash-table :test 'equal)
+(defvar *skill-registry* (make-hash-table :test 'equal)
   "Global registry of all loaded skills.")
 
-(defvar *skill-telemetry* (make-hash-table :test 'equal))
+(defvar *telemetry-table* (make-hash-table :test 'equal))
 (defvar *telemetry-lock* (bordeaux-threads:make-lock "harness-telemetry-lock"))
 
-(defun harness-track-telemetry (skill-name duration status)
-  "Updates performance metrics for a specific skill. Status should be :success or :rejected."
+(defun telemetry-track (skill-name duration status)
+  "Updates performance metrics for a skill. STATUS is :success or :rejected."
   (when skill-name
     (bordeaux-threads:with-lock-held (*telemetry-lock*)
-      (let ((entry (or (gethash skill-name *skill-telemetry*) (list :executions 0 :total-time 0 :failures 0))))
+      (let ((entry (or (gethash skill-name *telemetry-table*) (list :executions 0 :total-time 0 :failures 0))))
         (incf (getf entry :executions))
         (incf (getf entry :total-time) duration)
         (when (eq status :rejected) (incf (getf entry :failures)))
-        (setf (gethash skill-name *skill-telemetry*) entry)))))
+        (setf (gethash skill-name *telemetry-table*) entry)))))
 
-(defvar *cognitive-tools* (make-hash-table :test 'equal))
+(defvar *cognitive-tool-registry* (make-hash-table :test 'equal))
 
 (defstruct cognitive-tool
   name
@@ -225,21 +178,50 @@ The ~package.lisp~ file defines the public API of the ~opencortex~ harness.
   body)
 
 (defmacro def-cognitive-tool (name description parameters &key guard body)
-  "Registers a new cognitive tool into the global registry. Parameters must be a list of property lists."
-  `(setf (gethash (string-downcase (string ',name)) *cognitive-tools*)
+  "Registers a cognitive tool. PARAMETERS is a list of plists, one per parameter."
+  `(setf (gethash (string-downcase (string ',name)) *cognitive-tool-registry*)
          (make-cognitive-tool :name (string-downcase (string ',name))
                               :description ,description
                               :parameters ',parameters
                               :guard ,guard
                               :body ,body)))
 
-(defun harness-log (msg &rest args)
-  "Centralized logging for the harness."
+(defun cognitive-tool-prompt ()
+  "Serialises all registered tools into a prompt string for the LLM."
+  (let ((descriptions nil))
+    (maphash (lambda (k tool)
+               (declare (ignore k))
+               (push (format nil "- ~a: ~a~%  Parameters: ~a~%"
+                             (cognitive-tool-name tool)
+                             (cognitive-tool-description tool)
+                             (cognitive-tool-parameters tool))
+                     descriptions))
+              *cognitive-tool-registry*)
+    (if descriptions
+        (format nil "Available tools:~%~a" (apply #'concatenate 'string (sort descriptions #'string<)))
+        "No tools registered.")))
+
+(defun log-message (msg &rest args)
+  "Centralized, thread-safe logging for the harness."
   (let ((formatted-msg (apply #'format nil msg args)))
-    (bordeaux-threads:with-lock-held (*logs-lock*)
-      (push formatted-msg *system-logs*)
-      (when (> (length *system-logs*) *max-log-history*)
-        (setq *system-logs* (subseq *system-logs* 0 *max-log-history*))))
+    (bordeaux-threads:with-lock-held (*log-lock*)
+      (push formatted-msg *log-buffer*)
+      (when (> (length *log-buffer*) *log-limit*)
+        (setq *log-buffer* (subseq *log-buffer* 0 *log-limit*))))
     (format t "~a~%" formatted-msg)
     (finish-output)))
-#+end_src
+
+(setf *debugger-hook* (lambda (condition hook)
+  "Friendly error handler - shows diagnostic message instead of raw debugger."
+  (declare (ignore hook))
+  (format t "~%")
+  (format t "┌─────────────────────────────────────────────┐~%")
+  (format t "│  ERROR: ~A~%" (type-of condition))
+  (format t "│~%")
+  (format t "│  Run: passepartout doctor~%")
+  (format t "│  For system diagnostics~%")
+  (format t "└─────────────────────────────────────────────┘~%")
+  (format t "~%")
+  (format t "Details: ~A~%" condition)
+  (finish-output)
+  (uiop:quit 1)))

lisp/core-loop-act.lisp

@@ -1,40 +1,24 @@
-#+TITLE: Stage 3: Act (act.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:act:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle act.lisp
+(in-package :passepartout)
 
-* Overview
-The Act stage is where cognition meets reality. After the Probabilistic engine proposes and the Deterministic engine verifies, Act executes the approved action.
-
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Actuator Configuration
-#+begin_src lisp
-(defvar *default-actuator* :cli
+(defvar *actuator-default* :cli
   "The actuator used when no explicit target is specified.")
 
-(defvar *silent-actuators* '(:cli :system-message :emacs)
+(defvar *actuator-silent* '(:cli :system-message :emacs)
   "List of actuators that don't generate tool-output feedback.")
 
-(defun initialize-actuators ()
+(defun actuator-initialize ()
   "Register core actuators and load configuration."
   (let ((def (uiop:getenv "DEFAULT_ACTUATOR"))
         (silent (uiop:getenv "SILENT_ACTUATORS")))
     (when def
-      (setf *default-actuator* (intern (string-upcase def) :keyword)))
+      (setf *actuator-default* (intern (string-upcase def) :keyword)))
     (when silent
-      (setf *silent-actuators*
+      (setf *actuator-silent*
             (mapcar (lambda (s) (intern (string-upcase (string-trim '(#\Space) s)) :keyword))
                     (uiop:split-string silent :separator '(#\,))))))
 
-  (register-actuator :system #'execute-system-action)
-  (register-actuator :tool #'execute-tool-action)
+  (register-actuator :system #'action-system-execute)
+  (register-actuator :tool #'action-tool-execute)
 
   (register-actuator :tui (lambda (action context)
                             (declare (ignore context))
@@ -43,32 +27,26 @@ The Act stage is where cognition meets reality. After the Probabilistic engine p
                               (when (and stream (open-stream-p stream))
                                 (format stream "~a" (frame-message action))
                                 (finish-output stream))))))
-#+end_src
 
-** Action Dispatch (dispatch-action)
-#+begin_src lisp
-(defun dispatch-action (action context)
+(defun action-dispatch (action context)
   "Route an approved action to its registered actuator."
   (let ((payload (proto-get action :payload)))
     (when (eq (proto-get payload :sensor) :heartbeat)
-      (return-from dispatch-action nil))
+      (return-from action-dispatch nil))
 
     (when (and action (listp action))
       (let* ((meta (proto-get context :meta))
              (source (proto-get meta :source))
-             (raw-target (or (proto-get action :target) source *default-actuator*))
+             (raw-target (or (proto-get action :target) source *actuator-default*))
              (target (intern (string-upcase (string raw-target)) :keyword))
              (actuator-fn (gethash target *actuator-registry*)))
         (when (and meta (null (getf action :meta)))
           (setf (getf action :meta) meta))
         (if actuator-fn
             (funcall actuator-fn action context)
-            (harness-log "ACT ERROR: No actuator registered for '~s'" target))))))
-#+end_src
+            (log-message "ACT ERROR: No actuator registered for '~s'" target))))))
 
-** System Actuator (execute-system-action)
-#+begin_src lisp
-(defun execute-system-action (action context)
+(defun action-system-execute (action context)
   "Execute internal harness commands."
   (declare (ignore context))
   (let* ((payload (getf action :payload))
@@ -77,14 +55,11 @@ The Act stage is where cognition meets reality. After the Probabilistic engine p
       (:eval
        (eval (read-from-string (getf payload :code))))
       (:message
-       (harness-log "ACT [System]: ~a" (getf payload :text)))
+       (log-message "ACT [System]: ~a" (getf payload :text)))
       (t
-       (harness-log "ACT ERROR [System]: Unknown command '~s'" cmd)))))
-#+end_src
+       (log-message "ACT ERROR [System]: Unknown command '~s'" cmd)))))
 
-** Tool Actuator (execute-tool-action)
-#+begin_src lisp
-(defun execute-tool-action (action context)
+(defun action-tool-execute (action context)
   "Execute a registered cognitive tool."
   (let* ((payload (getf action :payload))
          (tool-name (getf payload :tool))
@@ -98,8 +73,8 @@ The Act stage is where cognition meets reality. After the Probabilistic engine p
             (let* ((clean-args (if (and (listp tool-args) (listp (car tool-args))) (car tool-args) tool-args))
                    (result (funcall (cognitive-tool-body tool) clean-args)))
               (when source
-                (dispatch-action (list :TYPE :REQUEST :TARGET source 
-                                       :PAYLOAD (list :ACTION :MESSAGE :TEXT (format-tool-result tool-name result)))
+                (action-dispatch (list :TYPE :REQUEST :TARGET source 
+                                       :PAYLOAD (list :ACTION :MESSAGE :TEXT (tool-result-format tool-name result)))
                                 context))
               (list :TYPE :EVENT :DEPTH (1+ depth) :META meta
                     :PAYLOAD (list :SENSOR :tool-output :RESULT result :TOOL tool-name)))
@@ -108,11 +83,8 @@ The Act stage is where cognition meets reality. After the Probabilistic engine p
                   :PAYLOAD (list :SENSOR :tool-error :TOOL tool-name :MESSAGE (format nil "~a" c)))))
         (list :TYPE :EVENT :DEPTH (1+ depth) :META meta
               :PAYLOAD (list :SENSOR :tool-error :MESSAGE (format nil "Tool '~a' not found" tool-name))))))
-#+end_src
 
-** Tool Result Formatting (format-tool-result)
-#+begin_src lisp
-(defun format-tool-result (tool-name result)
+(defun tool-result-format (tool-name result)
   "Format a tool result for display."
   (if (listp result)
       (let ((status (getf result :status))
@@ -123,11 +95,8 @@ The Act stage is where cognition meets reality. After the Probabilistic engine p
           ((and (eq status :error) msg) (format nil "ERROR [~a]: ~a" tool-name msg))
           (t (format nil "TOOL [~a] RESULT: ~s" tool-name result))))
       (format nil "TOOL [~a] RESULT: ~a" tool-name result)))
-#+end_src
 
-** Act Gate (Stage 3)
-#+begin_src lisp
-(defun act-gate (signal)
+(defun loop-gate-act (signal)
   "Final stage of the metabolic pipeline: Actuation."
   (let* ((approved (getf signal :approved-action))
          (type (getf signal :type))
@@ -139,7 +108,7 @@ The Act stage is where cognition meets reality. After the Probabilistic engine p
              (verified (deterministic-verify approved signal)))
         (if (and (listp verified) (member (getf verified :type) '(:LOG :EVENT)) (not (member original-type '(:LOG :EVENT))))
             (progn
-              (harness-log "ACT BLOCKED: Action failed last-mile deterministic check.")
+              (log-message "ACT BLOCKED: Action failed last-mile deterministic check.")
               (setf (getf signal :approved-action) nil)
               (setf feedback verified))
             (progn
@@ -147,41 +116,37 @@ The Act stage is where cognition meets reality. After the Probabilistic engine p
               (setf approved verified)))))
 
     (case type
-      (:REQUEST (dispatch-action signal signal))
-      (:LOG (dispatch-action signal signal))
+      (:REQUEST (action-dispatch signal signal))
+      (:LOG (action-dispatch signal signal))
       (:EVENT
        (if approved
            (let* ((target (getf approved :target))
-                  (result (dispatch-action approved signal)))
+                  (result (action-dispatch approved signal)))
              (cond
                ((and (listp result) (member (getf result :type) '(:EVENT :LOG)))
                 (setf feedback result))
-               ((and result (not (member target *silent-actuators*)))
+               ((and result (not (member target *actuator-silent*)))
                 (setf feedback (list :type :EVENT :depth (1+ (getf signal :depth 0)) :meta meta
                                     :payload (list :sensor :tool-output :result result :tool approved))))))
-           (when source (dispatch-action signal signal)))))
+           (when source (action-dispatch signal signal)))))
     (setf (getf signal :status) :acted)
     feedback))
-#+end_src
 
-* Test Suite
-#+begin_src lisp :tangle ../tests/pipeline-act-tests.lisp
 (eval-when (:compile-toplevel :load-toplevel :execute)
   (ql:quickload :fiveam :silent t))
 
-(defpackage :opencortex-pipeline-act-tests
-  (:use :cl :fiveam :opencortex)
+(defpackage :passepartout-pipeline-act-tests
+  (:use :cl :fiveam :passepartout)
   (:export #:pipeline-act-suite))
 
-(in-package :opencortex-pipeline-act-tests)
+(in-package :passepartout-pipeline-act-tests)
 
 (def-suite pipeline-act-suite :description "Test suite for Act pipeline")
 (in-suite pipeline-act-suite)
 
-(test test-act-gate-basic
-  (clrhash opencortex::*skills-registry*)
+(test test-loop-gate-act-basic
+  (clrhash passepartout::*skills-registry*)
   (let* ((signal (list :type :EVENT :status nil :depth 0 :approved-action '(:target :cli :payload (:text "Hello"))))
-         (result (act-gate signal)))
+         (result (loop-gate-act signal)))
     (is (eq :acted (getf signal :status)))
     (is (null result))))
-#+end_src

lisp/core-loop-perceive.lisp

@@ -1,37 +1,20 @@
-#+TITLE: Stage 1: Perceive (perceive.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:perceive:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle perceive.lisp
+(in-package :passepartout)
 
-* Overview
-The Perceive stage is the "sensory cortex" of OpenCortex. Its job is to take raw stimuli from the outside world and transform them into standardized Signals that the rest of the pipeline can process.
+(defvar *loop-interrupt* nil)
 
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Sensor Configuration
-#+begin_src lisp
-(defvar *async-sensors* '(:chat-message :delegation :user-command)
+(defvar *loop-async-sensors* '(:chat-message :delegation :user-command)
   "Sensors that are processed in dedicated threads.")
 
-(defvar *foveal-focus-id* nil
+(defvar *loop-focus-id* nil
   "The Org ID of the node the user is currently interacting with.")
-#+end_src
 
-** Stimulus Injection (inject-stimulus)
-#+begin_src lisp
-(defun inject-stimulus (raw-message &key stream (depth 0))
+(defun stimulus-inject (raw-message &key stream (depth 0))
   "Inject a raw message into the signal processing pipeline."
   (let* ((payload (getf raw-message :payload))
          (sensor (getf payload :sensor))
          (meta (getf raw-message :meta))
          (async-p (or (getf payload :async-p)
-                     (member sensor *async-sensors*))))
+                     (member sensor *loop-async-sensors*))))
 
     (unless meta
       (setf meta (list :SOURCE :SYSTEM :SESSION-ID "internal")))
@@ -47,27 +30,24 @@ The Perceive stage is the "sensory cortex" of OpenCortex. Its job is to take raw
          (lambda ()
            (restart-case (process-signal raw-message)
              (skip-event () nil)))
-         :name "opencortex-async-task")
+         :name "passepartout-async-task")
         
         (restart-case
             (handler-bind ((error (lambda (c)
-                                    (harness-log "SYSTEM ERROR: ~a" c)
+                                    (log-message "SYSTEM ERROR: ~a" c)
                                     (invoke-restart 'skip-event))))
               (process-signal raw-message))
           (skip-event ()
-            (harness-log "SYSTEM RECOVERY: Stimulus dropped."))))))
-#+end_src
+            (log-message "SYSTEM RECOVERY: Stimulus dropped."))))))
 
-** Perceive Gate (perceive-gate)
-#+begin_src lisp
-(defun perceive-gate (signal)
+(defun loop-gate-perceive (signal)
   "Stage 1 of the metabolic pipeline: Normalize sensory input."
   (let* ((payload (getf signal :payload))
          (type (getf signal :type))
          (meta (getf signal :meta))
          (sensor (getf payload :sensor)))
 
-    (harness-log "GATE [Perceive]: ~a (~a) [Source: ~s]"
+    (log-message "GATE [Perceive]: ~a (~a) [Source: ~s]"
                  type (or sensor "no-sensor") (getf meta :source))
 
     (cond ((eq type :EVENT)
@@ -81,41 +61,36 @@ The Perceive stage is the "sensory cortex" of OpenCortex. Its job is to take raw
               (let ((element (getf payload :element)))
                 (when element
                   (snapshot-memory)
-                  (setf *foveal-focus-id* (getf element :id))
+                  (setf *loop-focus-id* (getf element :id))
                   (ingest-ast element))))
              (:interrupt
-              (setf *interrupt-flag* t))))
+              (setf *loop-interrupt* t))))
           ((eq type :RESPONSE)
-           (harness-log "GATE [Perceive]: Act Result -> ~a" (getf payload :status))))
+           (log-message "GATE [Perceive]: Act Result -> ~a" (getf payload :status))))
 
     (setf (getf signal :status) :perceived)
-    (setf (getf signal :foveal-focus) *foveal-focus-id*)
+    (setf (getf signal :foveal-focus) *loop-focus-id*)
     signal))
-#+end_src
 
-* Test Suite
-
-#+begin_src lisp :tangle ../tests/pipeline-perceive-tests.lisp
 (eval-when (:compile-toplevel :load-toplevel :execute)
   (ql:quickload :fiveam :silent t))
 
-(defpackage :opencortex-pipeline-perceive-tests
-  (:use :cl :fiveam :opencortex)
+(defpackage :passepartout-pipeline-perceive-tests
+  (:use :cl :fiveam :passepartout)
   (:export #:pipeline-perceive-suite))
 
-(in-package :opencortex-pipeline-perceive-tests)
+(in-package :passepartout-pipeline-perceive-tests)
 
 (def-suite pipeline-perceive-suite :description "Test suite for Perceive pipeline")
 (in-suite pipeline-perceive-suite)
 
-(test test-perceive-gate
-  (clrhash opencortex::*memory*)
+(test test-loop-gate-perceive
+  (clrhash passepartout::*memory*)
   (let* ((signal (list :type :EVENT :payload (list :sensor :buffer-update :ast (list :type :HEADLINE :properties (list :ID "test-node" :TITLE "Test") :contents nil))))
-         (result (perceive-gate signal)))
+         (result (loop-gate-perceive signal)))
     (is (eq :perceived (getf result :status)))
-    (is (not (null (gethash "test-node" opencortex::*memory*))))))
+    (is (not (null (gethash "test-node" passepartout::*memory*))))))
 
 (test test-depth-limiting
   (let ((runaway-signal (list :type :EVENT :depth 11 :payload (list :sensor :heartbeat))))
     (is (null (process-signal runaway-signal)))))
-#+end_src

lisp/core-loop-reason.lisp

@@ -1,49 +1,27 @@
-#+TITLE: Stage 2: Reason (reason.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:reason:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle reason.lisp
+(in-package :passepartout)
 
-* Overview
-The Reason stage implements the core Innovation of OpenCortex: the separation of probabilistic reasoning (neural/LLM) from deterministic verification (logic/safety).
-
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Probabilistic Engine Configuration
-#+begin_src lisp
-(defvar *probabilistic-backends* (make-hash-table :test 'equal))
+(defvar *backend-registry* (make-hash-table :test 'equal))
 
 (defvar *provider-cascade* nil)
 
-(defvar *model-selector-fn* nil)
+(defvar *model-selector* nil)
 
-(defvar *consensus-enabled-p* nil)
-#+end_src
+(defvar *consensus-enabled* nil)
 
-** Backend Registration (register-probabilistic-backend)
-#+begin_src lisp
-(defun register-probabilistic-backend (name fn)
-  (setf (gethash name *probabilistic-backends*) fn))
-#+end_src
+(defun backend-register (name fn)
+  (setf (gethash name *backend-registry*) fn))
 
-** Cascade Dispatch (probabilistic-call)
-#+begin_src lisp
-(defun probabilistic-call (prompt &key
+(defun backend-cascade-call (prompt &key
                                 (system-prompt "You are the Probabilistic engine.")
                                 (cascade nil)
                                 (context nil))
   (let ((backends (or cascade *provider-cascade*)))
     (or (dolist (backend backends)
-          (let ((backend-fn (gethash backend *probabilistic-backends*)))
+          (let ((backend-fn (gethash backend *backend-registry*)))
             (when backend-fn
-              (harness-log "PROBABILISTIC: Attempting backend ~a..." backend)
-              (let* ((model (when *model-selector-fn*
-                              (funcall *model-selector-fn* backend context)))
+              (log-message "PROBABILISTIC: Attempting backend ~a..." backend)
+              (let* ((model (when *model-selector*
+                              (funcall *model-selector* backend context)))
                      (result (if model
                                  (funcall backend-fn prompt system-prompt :model model)
                                  (funcall backend-fn prompt system-prompt))))
@@ -52,15 +30,12 @@ The Reason stage implements the core Innovation of OpenCortex: the separation of
                       ((stringp result)
                        (return result))
                       (t
-                       (harness-log "PROBABILISTIC: Backend ~a failed: ~a"
+                       (log-message "PROBABILISTIC: Backend ~a failed: ~a"
                                    backend (getf result :message))))))))
         (list :type :LOG
               :payload (list :text "Neural Cascade Failure: All providers exhausted.")))))
-#+end_src
 
-** Cognitive Proposal Generation (Think)
-#+begin_src lisp
-(defun strip-markdown (text)
+(defun markdown-strip (text)
   (if (and text (stringp text))
       (let ((cleaned text))
         (setf cleaned (cl-ppcre:regex-replace-all "^```[a-z]*\\n" cleaned ""))
@@ -69,7 +44,7 @@ The Reason stage implements the core Innovation of OpenCortex: the separation of
         (string-trim '(#\Space #\Newline #\Tab) cleaned))
       text))
 
-(defun normalize-plist-keywords (plist)
+(defun plist-keywords-normalize (plist)
   (when (listp plist)
     (loop for (k v) on plist by #'cddr
           collect (if (and (symbolp k) (not (keywordp k)))
@@ -92,23 +67,31 @@ The Reason stage implements the core Innovation of OpenCortex: the separation of
          (reflection-feedback (if rejection-trace
                                   (format nil "~%~%PREVIOUS PROPOSAL REJECTED: ~a" rejection-trace)
                                   ""))
-         (system-prompt (format nil "IDENTITY: ~a~a~%~%TOOLS:~%~a~%~%CONTEXT:~%~a~%~%LOGS:~%~a" 
-                               assistant-name reflection-feedback tool-belt global-context system-logs)))
-    (let* ((thought (probabilistic-call raw-prompt :system-prompt system-prompt :context context))
-           (cleaned (strip-markdown thought)))
-      (if (and cleaned (stringp cleaned) (> (length cleaned) 0) (char= (char cleaned 0) #\((char= (char cleaned 0) #\()))
-          (handler-case
-              (let ((parsed (read-from-string cleaned)))
-                (if (listp parsed)
-                    (normalize-plist-keywords parsed)
-                    (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned))))
-            (error () (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned))))
-          (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT (or cleaned "No response")))))))
-#+end_src
+         (skill-augments (let ((augments ""))
+                           (maphash (lambda (name skill)
+                                      (declare (ignore name))
+                                      (let ((aug-fn (skill-system-prompt-augment skill)))
+                                        (when aug-fn
+                                          (let ((aug-text (ignore-errors (funcall aug-fn context))))
+                                            (when (and aug-text (stringp aug-text) (> (length aug-text) 0))
+                                              (setf augments (concatenate 'string augments aug-text (string #\Newline))))))))
+                                    *skills-registry*)
+                           (when (> (length augments) 0) augments)))
+         (system-prompt (format nil "IDENTITY: ~a~a~%~%TOOLS:~%~a~%~%CONTEXT:~%~a~%~%LOGS:~%~a~%~a" 
+                                assistant-name reflection-feedback tool-belt global-context system-logs
+                                (or skill-augments ""))))
+    (let* ((thought (backend-cascade-call raw-prompt :system-prompt system-prompt :context context))
+           (cleaned (markdown-strip thought)))
+       (if (and cleaned (stringp cleaned) (> (length cleaned) 0) (or (char= (char cleaned 0) #\() (char= (char cleaned 0) #\[)))
+           (handler-case
+               (let ((parsed (read-from-string cleaned)))
+                 (if (listp parsed)
+                     (plist-keywords-normalize parsed)
+                     (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned :EXPLANATION "Generated by the Probabilistic engine."))))
+             (error () (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned :EXPLANATION "Generated by the Probabilistic engine."))))
+            (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT (if (stringp cleaned) cleaned "No response") :EXPLANATION "Generated by the Probabilistic engine."))))))
 
-** Deterministic Engine (Verification)
-#+begin_src lisp
-(defun deterministic-verify (proposed-action context)
+(defun cognitive-verify (proposed-action context)
   (let ((current-action proposed-action)
         (skills nil))
     (maphash (lambda (name skill)
@@ -124,20 +107,17 @@ The Reason stage implements the core Innovation of OpenCortex: the separation of
           (let ((next-action (funcall gate current-action context)))
             (when (and (listp next-action)
                        (member (proto-get next-action :type) '(:LOG :EVENT)))
-              (harness-log "DETERMINISTIC: Intercepted by skill '~a'" (skill-name skill))
-              (return-from deterministic-verify next-action))
-            (setf current-action next-action)))))
+              (log-message "DETERMINISTIC: Intercepted by skill '~a'" (skill-name skill))
+              (return-from cognitive-verify next-action))
+             (when next-action (setf current-action next-action))))))
     current-action))
-#+end_src
 
-** Reason Gate (Stage 2)
-#+begin_src lisp
-(defun reason-gate (signal)
+(defun loop-gate-reason (signal)
   (let* ((type (proto-get signal :type))
          (payload (proto-get signal :payload))
          (sensor (proto-get payload :sensor)))
     (unless (and (eq type :EVENT) (member sensor '(:user-input :chat-message)))
-      (return-from reason-gate signal))
+      (return-from loop-gate-reason signal))
     (let ((retries 3)
           (current-signal (copy-tree signal))
           (last-rejection nil))
@@ -150,7 +130,7 @@ The Reason stage implements the core Innovation of OpenCortex: the separation of
           (setf (getf (getf current-signal :payload) :rejection-trace) last-rejection))
         (let ((candidate (think current-signal)))
           (if (and candidate (listp candidate))
-              (let ((verified (deterministic-verify candidate current-signal)))
+              (let ((verified (cognitive-verify candidate current-signal)))
                 (if (member (getf verified :type) '(:LOG :EVENT))
                     (progn (decf retries) (setf last-rejection verified))
                     (progn
@@ -161,25 +141,22 @@ The Reason stage implements the core Innovation of OpenCortex: the separation of
                 (setf (getf signal :approved-action) nil)
                 (setf (getf signal :status) :reasoned)
                 (return signal))))))))
-#+end_src
 
-* Test Suite
-#+begin_src lisp :tangle ../tests/pipeline-reason-tests.lisp
 (eval-when (:compile-toplevel :load-toplevel :execute)
   (ql:quickload :fiveam :silent t))
 
-(defpackage :opencortex-pipeline-reason-tests
-  (:use :cl :fiveam :opencortex)
+(defpackage :passepartout-pipeline-reason-tests
+  (:use :cl :fiveam :passepartout)
   (:export #:pipeline-reason-suite))
 
-(in-package :opencortex-pipeline-reason-tests)
+(in-package :passepartout-pipeline-reason-tests)
 
 (def-suite pipeline-reason-suite :description "Test suite for Reason pipeline")
 (in-suite pipeline-reason-suite)
 
 (test test-decide-gate-safety
-  (clrhash opencortex::*skills-registry*)
-  (opencortex::defskill :mock-safety
+  (clrhash passepartout::*skills-registry*)
+  (passepartout::defskill :mock-safety
     :priority 50
     :trigger (lambda (ctx) (declare (ignore ctx)) t)
     :deterministic (lambda (action ctx)
@@ -189,6 +166,5 @@ The Reason stage implements the core Innovation of OpenCortex: the separation of
                         action)))
   (let* ((candidate '(:type :REQUEST :payload (:action :shell :cmd "rm -rf /")))
          (signal '(:type :EVENT :payload (:sensor :user-input)))
-         (result (deterministic-verify candidate signal)))
+         (result (cognitive-verify candidate signal)))
     (is (eq :LOG (getf result :type)))))
-#+end_src

lisp/core-loop.lisp

@@ -1,45 +1,26 @@
-#+TITLE: The Metabolic Loop (loop.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:loop:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle loop.lisp
+(in-package :passepartout)
 
-* Overview
-The Metabolic Loop is the fundamental rhythm of OpenCortex: the continuous processing of signals from perception through cognition to action.
-
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Global Variables (Thread-Safe)
-#+begin_src lisp
 (defvar *interrupt-flag* nil
   "Atomic flag set by signal handlers to trigger graceful shutdown.")
 
-(defvar *interrupt-lock* (bt:make-lock "harness-interrupt-lock")
+(defvar *loop-interrupt-lock* (bt:make-lock "harness-interrupt-lock")
   "Mutex protecting *interrupt-flag* access.")
 
 (defvar *heartbeat-thread* nil
   "Handle to the heartbeat thread.")
-#+end_src
 
-** Core Engine (process-signal)
-#+begin_src lisp
-(defun process-signal (signal)
+(defun loop-process (signal)
   "The entry point to the Metabolic Pipeline: Perceive -> Reason -> Act."
   (let ((current-signal signal))
     (loop while current-signal do
       (let ((depth (getf current-signal :depth 0))
             (meta (getf current-signal :meta)))
         (when (> depth 10)
-          (harness-log "METABOLISM ERROR: Max recursion depth reached.")
+          (log-message "METABOLISM ERROR: Max recursion depth reached.")
           (return nil))
 
-        (when (bt:with-lock-held (*interrupt-lock*) *interrupt-flag*)
-          (harness-log "METABOLISM: Interrupted by shutdown signal.")
+        (when (bt:with-lock-held (*loop-interrupt-lock*) *interrupt-flag*)
+          (log-message "METABOLISM: Interrupted by shutdown signal.")
           (return nil))
 
         (handler-case
@@ -54,27 +35,24 @@ The Metabolic Loop is the fundamental rhythm of OpenCortex: the continuous proce
                     (setf current-signal nil))))
           (error (c)
             (let ((sensor (ignore-errors (getf (getf current-signal :payload) :sensor))))
-              (harness-log "METABOLISM CRASH [~a]: ~a" (or sensor :unknown) c)
+              (log-message "METABOLISM CRASH [~a]: ~a" (or sensor :unknown) c)
               (unless (member sensor '(:loop-error :tool-error :syntax-error))
-                (harness-log "CRITICAL ERROR: Initiating Micro-Rollback.")
+                (log-message "CRITICAL ERROR: Initiating Micro-Rollback.")
                 (rollback-memory 0))
               (if (or (> depth 2) (member sensor '(:loop-error :tool-error)))
                   (setf current-signal nil)
                   (setf current-signal
                         (list :type :EVENT :depth (1+ depth) :meta meta
                               :payload (list :sensor :loop-error :message (format nil "~a" c) :depth depth)))))))))))
-#+end_src
 
-** Heartbeat Mechanism
-#+begin_src lisp
-(defvar *auto-save-interval* 300)
+(defvar *memory-auto-save-interval* 300)
 (defvar *heartbeat-save-counter* 0)
 
-(defun start-heartbeat ()
+(defun heartbeat-start ()
   "Starts the background heartbeat thread."
   (let ((interval (or (ignore-errors (parse-integer (uiop:getenv "HEARTBEAT_INTERVAL"))) 60))
-        (auto-save (or (ignore-errors (parse-integer (uiop:getenv "MEMORY_AUTO_SAVE_INTERVAL"))) *auto-save-interval*)))
-    (setf *auto-save-interval* auto-save)
+        (auto-save (or (ignore-errors (parse-integer (uiop:getenv "MEMORY_AUTO_SAVE_INTERVAL"))) *memory-auto-save-interval*)))
+    (setf *memory-auto-save-interval* auto-save)
     (setf *heartbeat-save-counter* 0)
 
     (setf *heartbeat-thread*
@@ -83,31 +61,22 @@ The Metabolic Loop is the fundamental rhythm of OpenCortex: the continuous proce
              (loop
                (sleep interval)
                (incf *heartbeat-save-counter*)
-               (when (>= *heartbeat-save-counter* (/ *auto-save-interval* interval))
+               (when (>= *heartbeat-save-counter* (/ *memory-auto-save-interval* interval))
                  (setf *heartbeat-save-counter* 0)
                  (save-memory-to-disk))
                (inject-stimulus
                  (list :type :EVENT :payload (list :sensor :heartbeat :unix-time (get-universal-time))))))
-           :name "opencortex-heartbeat"))))
-#+end_src
+           :name "passepartout-heartbeat"))))
 
-** Shutdown Flag
-#+begin_src lisp
 (defvar *shutdown-save-enabled* t)
-#+end_src
 
-** Health Status
-#+begin_src lisp
 (defvar *system-health* :unknown
   "Current system health status: :healthy, :degraded, :unhealthy, or :unknown.")
 
 (defvar *health-check-ran* nil
   "Flag indicating if initial health check has completed.")
-#+end_src
 
-** Proactive Doctor
-#+begin_src lisp
-(defun run-startup-health-check ()
+(defun diagnostics-startup-run ()
   "Runs the doctor diagnostics on startup. Returns health status."
   (format t "~%")
   (format t "==================================================~%")
@@ -125,21 +94,18 @@ The Metabolic Loop is the fundamental rhythm of OpenCortex: the continuous proce
                 (progn
                   (setf *system-health* :degraded)
                   (format t "DAEMON: Health check found issues.~%")
-                  (format t "         Run 'opencortex doctor --fix' to repair.~%")))))
+                  (format t "         Run 'passepartout doctor --fix' to repair.~%")))))
         (setf *health-check-ran* t))
     (error (c)
       (format t "DOCTOR ERROR: ~a~%" c)
       (setf *system-health* :unhealthy)
       (setf *health-check-ran* t)))
   (format t "==================================================~%~%"))
-#+end_src
 
-** Main Entry Point (main)
-#+begin_src lisp
 (defun main ()
-  "Entry point for OpenCortex. Initializes the system and enters idle loop."
+  "Entry point for Passepartout. Initializes the system and enters idle loop."
   (let* ((home (uiop:getenv "HOME"))
-         (env-file (uiop:merge-pathnames* ".local/share/opencortex/.env" (uiop:ensure-directory-pathname home))))
+         (env-file (uiop:merge-pathnames* ".config/passepartout/.env" (uiop:ensure-directory-pathname home))))
     (when (uiop:file-exists-p env-file)
       (cl-dotenv:load-env env-file)))
 
@@ -148,51 +114,47 @@ The Metabolic Loop is the fundamental rhythm of OpenCortex: the continuous proce
   (initialize-all-skills)
   
   ;; Run proactive doctor before starting services
-  (run-startup-health-check)
+  (diagnostics-startup-run)
   
-  (start-heartbeat)
+  (heartbeat-start)
   (start-daemon)
 
   #+sbcl
   (sb-sys:enable-interrupt sb-unix:sigint
                             (lambda (sig code scp)
                               (declare (ignore sig code scp))
-                              (harness-log "SHUTDOWN: SIGINT received. Saving memory...")
+                              (log-message "SHUTDOWN: SIGINT received. Saving memory...")
                               (when *shutdown-save-enabled* (save-memory-to-disk))
                               (uiop:quit 0)))
 
   (let ((sleep-interval (or (ignore-errors (parse-integer (uiop:getenv "DAEMON_SLEEP_INTERVAL"))) 3600)))
     (loop
-      (when (bt:with-lock-held (*interrupt-lock*) *interrupt-flag*)
-        (harness-log "SHUTDOWN: Interrupt flag set. Saving memory...")
+      (when (bt:with-lock-held (*loop-interrupt-lock*) *interrupt-flag*)
+        (log-message "SHUTDOWN: Interrupt flag set. Saving memory...")
         (when *shutdown-save-enabled* (save-memory-to-disk))
         (return))
       (sleep sleep-interval))))
-#+end_src
 
-* Test Suite
-#+begin_src lisp :tangle ../tests/immune-system-tests.lisp
 (eval-when (:compile-toplevel :load-toplevel :execute)
   (ql:quickload :fiveam :silent t))
 
-(defpackage :opencortex-immune-system-tests
-  (:use :cl :fiveam :opencortex)
+(defpackage :passepartout-immune-system-tests
+  (:use :cl :fiveam :passepartout)
   (:export #:immune-suite))
 
-(in-package :opencortex-immune-system-tests)
+(in-package :passepartout-immune-system-tests)
 
 (def-suite immune-suite :description "Verification of the Immune System (Core Error Hooks)")
 (in-suite immune-suite)
 
 (test loop-error-injection
   "Verify that a crash in think/decide triggers a :loop-error stimulus."
-  (clrhash opencortex::*skills-registry*)
-  (opencortex:defskill :evil-skill
+  (clrhash passepartout::*skills-registry*)
+  (passepartout:defskill :evil-skill
     :priority 100
     :trigger (lambda (ctx) (eq (getf (getf ctx :payload) :sensor) :user-input))
     :probabilistic (lambda (ctx) (declare (ignore ctx)) (error "CRITICAL BRAIN FAILURE"))
     :deterministic nil)
-  (opencortex:process-signal '(:type :EVENT :payload (:sensor :user-input)))
-  (let ((logs (opencortex:context-get-system-logs 20)))
+  (passepartout:loop-process '(:type :EVENT :payload (:sensor :user-input)))
+  (let ((logs (passepartout:context-get-system-logs 20)))
     (is (not (null (find-if (lambda (line) (search "CRITICAL BRAIN FAILURE" line)) logs))))))
-#+end_src

lisp/core-memory.lisp

@@ -0,0 +1,164 @@
+(in-package :passepartout)
+
+(defvar *memory-store* (make-hash-table :test 'equal))
+(defvar *memory-history* (make-hash-table :test 'equal)
+  "Immutable Merkle-Tree versioning store mapping hashes to objects.")
+
+(defun memory-object-get (id)
+  "Retrieves an memory-object by ID from *memory-store*."
+  (gethash id *memory-store*))
+
+(defun memory-objects-by-attribute (attr value)
+  "Returns all memory-objects whose :ATTRIBUTES plist has ATTR = VALUE."
+  (let ((results nil))
+    (maphash (lambda (id obj)
+               (declare (ignore id))
+               (when (equal (getf (memory-object-attributes obj) attr) value)
+                 (push obj results)))
+             *memory-store*)
+    (nreverse results)))
+
+(defun memory-id-generate ()
+  "Generates a UUIDv4 unique ID. Compatible with Agora Note UUIDs."
+  (concatenate 'string "id-" (string-downcase (format nil "~a" (uuid:make-v4-uuid)))))
+
+(defstruct memory-object
+  id type attributes content vector parent-id children version last-sync hash)
+
+(defmethod make-load-form ((obj memory-object) &optional env)
+  (make-load-form-saving-slots obj :environment env))
+
+(defun deep-copy-memory-object (obj)
+  "Creates a full copy of an memory-object, including fresh lists for attributes and children."
+  (make-memory-object :id (memory-object-id obj)
+                  :type (memory-object-type obj)
+                  :attributes (copy-list (memory-object-attributes obj))
+                  :content (memory-object-content obj)
+                  :vector (memory-object-vector obj)
+                  :parent-id (memory-object-parent-id obj)
+                  :children (copy-list (memory-object-children obj))
+                  :version (memory-object-version obj)
+                  :last-sync (memory-object-last-sync obj)
+                  :hash (memory-object-hash obj)))
+
+(defun memory-merkle-hash (id type attributes content child-hashes)
+  (let* ((alist (loop for (k v) on attributes by #'cddr collect (cons k v)))
+         (sorted-alist (sort alist #'string< :key (lambda (x) (format nil "~a" (car x)))))
+         (attr-string (format nil "~s" sorted-alist))
+         (children-string (format nil "~{~a~}" child-hashes))
+         (data-string (format nil "ID:~a|TYPE:~s|ATTRS:~a|CONTENT:~a|CHILDREN:~a"
+                               id type attr-string (or content "") children-string))
+         (digester (ironclad:make-digest :sha256)))
+    (ironclad:update-digest digester (ironclad:ascii-string-to-byte-array data-string))
+    (ironclad:byte-array-to-hex-string (ironclad:produce-digest digester))))
+
+(defun ingest-ast (ast &optional parent-id)
+  (let* ((type (getf ast :type))
+         (props (getf ast :properties))
+         (id (or (getf props :ID) (format nil "temp-~a" (get-universal-time))))
+         (contents (getf ast :contents))
+         (raw-content (when (eq type :HEADLINE)
+                        (format nil "~a~%~a" (getf props :TITLE) (or (getf ast :raw-content) ""))))
+         (child-ids nil) (child-hashes nil))
+    (dolist (child contents)
+      (when (listp child)
+        (let ((child-id (ingest-ast child id)))
+          (push child-id child-ids)
+          (let ((child-obj (gethash child-id *memory-store*)))
+            (when child-obj (push (memory-object-hash child-obj) child-hashes))))))
+    (setf child-ids (nreverse child-ids))
+    (setf child-hashes (nreverse child-hashes))
+    (let* ((hash (memory-merkle-hash id type props raw-content child-hashes))
+           (existing-obj (gethash hash *memory-history*))
+           (obj (or existing-obj
+                    (make-memory-object 
+                     :id id :type type :attributes props :content raw-content
+                     :parent-id parent-id :children child-ids
+                     :version (get-universal-time) :last-sync (get-universal-time)
+                     :hash hash))))
+      (unless existing-obj (setf (gethash hash *memory-history*) obj))
+      (setf (gethash id *memory-store*) obj)
+      id)))
+
+(defvar *memory-snapshots* nil)
+
+(defun memory-hash-table-copy (hash-table)
+  "Creates an independent copy of a hash table."
+  (let ((new-table (make-hash-table :test (hash-table-test hash-table) 
+                                     :size (hash-table-size hash-table))))
+    (maphash (lambda (k v) (setf (gethash k new-table) v)) hash-table)
+    new-table))
+
+(defun snapshot-memory ()
+  "Creates a CoW snapshot of *memory-store* for rollback recovery."
+  (let ((snapshot (make-hash-table :test 'equal :size (hash-table-size *memory-store*))))
+    (maphash (lambda (k v) (setf (gethash k snapshot) (deep-copy-memory-object v))) *memory-store*)
+    (push (list :timestamp (get-universal-time) :data snapshot) *memory-snapshots*)
+    (when (> (length *memory-snapshots*) 20)
+      (setf *memory-snapshots* (subseq *memory-snapshots* 0 20)))
+    (log-message "MEMORY - CoW Memory snapshot created.")))
+
+(defun rollback-memory (&optional (index 0))
+  "Restores *memory-store* from a snapshot. INDEX 0 = most recent."
+  (let ((snapshot (nth index *memory-snapshots*)))
+    (if snapshot
+        (progn (setf *memory-store* (memory-hash-table-copy (getf snapshot :data)))
+               (log-message "MEMORY - Memory rolled back to snapshot ~a" index))
+        (log-message "MEMORY ERROR - Snapshot ~a not found." index))))
+
+(defvar *memory-snapshot-path* nil)
+
+(defun memory-snapshot-path-ensure ()
+  "Returns the path to the memory snapshot file, resolving env or default."
+  (or *memory-snapshot-path*
+      (let ((env-path (uiop:getenv "MEMORY_SNAPSHOT_PATH")))
+        (setf *memory-snapshot-path*
+              (or env-path (namestring (uiop:merge-pathnames* "memory.snap" (user-homedir-pathname))))))))
+
+(defun save-memory-to-disk ()
+  "Writes the entire memory and history store to disk as a plist."
+  (let ((path (memory-snapshot-path-ensure)))
+    (with-open-file (stream path :direction :output :if-exists :supersede :if-does-not-exist :create)
+      (let ((memory-alist nil) (history-alist nil))
+        (maphash (lambda (k v) (push (cons k v) memory-alist)) *memory-store*)
+        (maphash (lambda (k v) (push (cons k v) history-alist)) *memory-history*)
+        (prin1 (list :memory memory-alist :history-store history-alist) stream)))
+    (log-message "MEMORY - Saved to ~a" path)))
+
+(defun load-memory-from-disk ()
+  "Reads memory state from disk and restores *memory-store* and *memory-history*."
+  (let ((path (memory-snapshot-path-ensure)))
+    (when (uiop:file-exists-p path)
+      (handler-case
+          (with-open-file (stream path :direction :input)
+            (let ((data (read stream nil)))
+              (when data
+                (let ((memory-alist (getf data :memory)) (history-alist (getf data :history-store)))
+                  (setf *memory-store* (make-hash-table :test 'equal :size (length memory-alist)))
+                  (dolist (kv memory-alist) (setf (gethash (car kv) *memory-store*) (cdr kv)))
+                  (setf *memory-history* (make-hash-table :test 'equal :size (length history-alist)))
+                  (dolist (kv history-alist) (setf (gethash (car kv) *memory-history*) (cdr kv)))
+                  (log-message "MEMORY - Loaded from ~a (~a objects)" path (hash-table-size *memory-store*))))))
+          (error (c) (log-message "MEMORY WARNING - Failed to load snapshot: ~a" c)))))
+  t)
+
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-memory-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:memory-suite))
+
+(in-package :passepartout-memory-tests)
+
+(def-suite memory-suite :description "Tests for the Merkle-Tree Memory")
+(in-suite memory-suite)
+
+(test merkle-hash-consistency
+  (let* ((ast1 '(:type :HEADLINE :properties (:ID "test-1" :TITLE "Node 1") :contents nil)))
+    (clrhash passepartout::*memory-store*)
+    (let ((id1 (ingest-ast ast1)))
+      (let ((hash1 (memory-object-hash (memory-object-get id1))))
+        (clrhash passepartout::*memory-store*)
+        (let ((id2 (ingest-ast ast1)))
+          (is (equal hash1 (memory-object-hash (memory-object-get id2)))))))))

lisp/core-skills.lisp

@@ -1,22 +1,6 @@
-#+TITLE: The Skill Engine (skills.lisp)
-#+AUTHOR: Agent
-#+FILETAGS: :harness:skills:
-#+STARTUP: content
-#+PROPERTY: header-args:lisp :tangle skills.lisp
+(in-package :passepartout)
 
-* Overview
-The ~opencortex~ Skill Engine enables **Late-Binding Intelligence**, allowing the system to discover and integrate new cognitive capabilities at runtime.
-
-* Implementation
-
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Global Skill Registry
-#+begin_src lisp
-(defun COSINE-SIMILARITY (v1 v2)
+(defun vector-cosine-similarity (v1 v2)
   "Computes cosine similarity between two vectors."
   (let* ((len1 (length v1)) (len2 (length v2)))
     (if (or (zerop len1) (zerop len2))
@@ -30,14 +14,16 @@ The ~opencortex~ Skill Engine enables **Late-Binding Intelligence**, allowing th
 (defun VAULT-MASK-STRING (s) (declare (ignore s)) "[MASKED]")
 (defvar *VAULT-MEMORY* (make-hash-table :test 'equal))
 
-(defstruct skill name priority dependencies trigger-fn probabilistic-prompt deterministic-fn)
-(defvar *skills-registry* (make-hash-table :test 'equal))
+(defstruct skill name priority dependencies trigger-fn probabilistic-prompt deterministic-fn system-prompt-augment)
+
+(defvar *skill-registry* (make-hash-table :test 'equal))
+
 (defvar *skill-catalog* (make-hash-table :test 'equal)
-  "A stateful tracking table for all skill files discovered in the environment.")
+  "Tracks all discovered skill files and their loading state.")
 
 (defstruct skill-entry filename (status :discovered) error-log (load-time 0))
 
-(defun find-triggered-skill (context)
+(defun skill-triggered-find (context)
   "Returns the highest priority skill whose trigger matches context."
   (let ((triggered nil))
     (maphash (lambda (name skill) 
@@ -45,36 +31,34 @@ The ~opencortex~ Skill Engine enables **Late-Binding Intelligence**, allowing th
                (when (and (skill-probabilistic-prompt skill)
                           (ignore-errors (funcall (skill-trigger-fn skill) context)))
                  (push skill triggered))) 
-             *skills-registry*)
+              *skill-registry*)
     (first (sort triggered #'> :key #'skill-priority))))
 
-(defmacro defskill (name &key priority dependencies trigger probabilistic deterministic)
-  "Registers a new skill into the global registry."
-  `(setf (gethash (string-downcase (string ,name)) *skills-registry*)
+(defmacro defskill (name &key priority dependencies trigger probabilistic deterministic system-prompt-augment)
+  "Registers a new skill. NAME is a keyword. TRIGGER is a function (context) → bool."
+  `(setf (gethash (string-downcase (string ,name)) *skill-registry*)
          (make-skill :name (string-downcase (string ,name)) 
                     :priority (or ,priority 10) 
                     :dependencies ',dependencies
                     :trigger-fn ,trigger 
                     :probabilistic-prompt ,probabilistic 
-                    :deterministic-fn ,deterministic)))
+                    :deterministic-fn ,deterministic
+                    :system-prompt-augment ,system-prompt-augment)))
 
-(defun resolve-skill-dependencies (skill-name)
-  "Recursively resolves dependencies for a given skill name."
+(defun skill-dependencies-resolve (skill-name)
+  "Resolves transitive dependencies. Returns list of skill names in dependency order."
   (let ((resolved nil) (seen nil))
     (labels ((visit (name) 
                (unless (member name seen :test #'equal) 
                  (push name seen)
-                 (let ((skill (gethash (string-downcase (string name)) *skills-registry*)))
+                 (let ((skill (gethash (string-downcase (string name)) *skill-registry*)))
                    (when skill 
                      (dolist (dep (skill-dependencies skill)) (visit dep))))
                  (push name resolved))))
       (visit skill-name) 
       (nreverse resolved))))
-#+end_src
 
-** Skill File Analysis (parse-skill-metadata)
-#+begin_src lisp
-(defun parse-skill-metadata (filepath)
+(defun skill-metadata-parse (filepath)
   "Extracts ID and DEPENDS_ON tags from org file."
   (let ((dependencies nil) (id nil) (content (uiop:read-file-string filepath)))
     (let ((id-start (search ":ID:" content)))
@@ -90,13 +74,25 @@ The ~opencortex~ Skill Engine enables **Late-Binding Intelligence**, allowing th
                     (unless (string= d "") (push d dependencies))))
                 (setf pos end)))))
     (values id (reverse dependencies))))
-#+end_src
 
-** Dependency Resolution (topological-sort-skills)
-#+begin_src lisp
-(defun topological-sort-skills (skills-dir)
+(defun skill-topological-sort (skills-dir)
   "Returns a list of skill filepaths sorted by dependency."
-  (let ((files (uiop:directory-files skills-dir "org-skill-*.org"))
+  (let* ((org-files (uiop:directory-files skills-dir "*.org"))
+         (lisp-files (uiop:directory-files skills-dir "*.lisp"))
+         (all-files (append org-files lisp-files))
+         (files (remove-if (lambda (f)
+                             (let ((n (pathname-name f)))
+                               (or (string= n "core-defpackage")
+                                   (string= n "core-skills")
+                                   (string= n "core-communication")
+                                   (string= n "core-memory")
+                                   (string= n "core-context")
+                                   (string= n "core-loop-perceive")
+                                   (string= n "core-loop-reason")
+                                   (string= n "core-loop-act")
+                                   (string= n "core-loop")
+                                   (string= n "core-manifest"))))
+                           all-files))
         (adj (make-hash-table :test 'equal))
         (name-to-file (make-hash-table :test 'equal))
         (id-to-file (make-hash-table :test 'equal))
@@ -105,10 +101,15 @@ The ~opencortex~ Skill Engine enables **Late-Binding Intelligence**, allowing th
         (stack (make-hash-table :test 'equal)))
     (dolist (file files)
       (let ((filename (pathname-name file)))
-        (multiple-value-bind (id deps) (parse-skill-metadata file)
-          (setf (gethash (string-downcase filename) name-to-file) file)
-          (when id (setf (gethash (string-downcase id) id-to-file) file))
-          (setf (gethash (string-downcase filename) adj) deps))))
+        (if (uiop:string-suffix-p (namestring file) ".lisp")
+            (progn
+              (setf (gethash (string-downcase filename) name-to-file) file)
+              (unless (gethash (string-downcase filename) adj)
+                (setf (gethash (string-downcase filename) adj) nil)))
+            (multiple-value-bind (id deps) (skill-metadata-parse file)
+              (setf (gethash (string-downcase filename) name-to-file) file)
+              (when id (setf (gethash (string-downcase id) id-to-file) file))
+              (setf (gethash (string-downcase filename) adj) deps)))))
     (labels ((visit (file)
                (let* ((filename (pathname-name file))
                       (node-key (string-downcase filename)))
@@ -134,11 +135,8 @@ The ~opencortex~ Skill Engine enables **Late-Binding Intelligence**, allowing th
           (let ((file (gethash (string-downcase name) name-to-file)))
             (when file (visit file)))))
       (nreverse result))))
-#+end_src
 
-** Jailed Loading (load-skill-from-org)
-#+begin_src lisp
-(defun validate-lisp-syntax (code-string)
+(defun lisp-syntax-validate (code-string)
   "Checks if a string contains valid Common Lisp forms."
   (handler-case
       (let ((*read-eval* nil))
@@ -147,32 +145,40 @@ The ~opencortex~ Skill Engine enables **Late-Binding Intelligence**, allowing th
         (values t nil))
     (error (c) (values nil (format nil "~a" c)))))
 
-(defun extract-tangle-target (line)
+(defun skill-package-forms-strip (code-string)
+  "Removes in-package forms so symbols get defined in skill package."
+  (let ((lines (uiop:split-string code-string :separator '(#\Newline)))
+        (result ""))
+    (dolist (line lines)
+      (let ((trimmed (string-trim '(#\Space #\Tab) line)))
+        (unless (uiop:string-prefix-p "(in-package" trimmed)
+          (setf result (concatenate 'string result line (string #\Newline))))))
+    result))
+
+(defun tangle-target-extract (line)
   "Extracts the value of the :tangle header."
   (let ((pos (search ":tangle" line)))
     (when pos
-      (let ((rest (string-trim '(#\Space #\Tab) (subseq line (+ pos 7)))))
+      (let ((rest (string-tirm '(#\Space #\Tab) (subseq line (+ pos 7)))))
         (let ((end (position #\Space rest)))
           (if end (subseq rest 0 end) rest))))))
 
 (defun load-skill-from-org (filepath)
   "Parses and evaluates Lisp blocks from an Org file."
   (let* ((skill-base-name (pathname-name filepath))
-         (entry (or (gethash skill-base-name *skill-catalog*) (make-skill-entry :filename skill-base-name))))
+         (entry (or (gethash skill-base-name *skill-catalog*) (setf (gethash skill-base-name *skill-catalog*) (make-skill-entry :filename skill-base-name)))))
     (setf (skill-entry-status entry) :loading)
     (handler-case
         (let* ((content (uiop:read-file-string filepath))
                (lines (uiop:split-string content :separator '(#\Newline)))
                (in-lisp-block nil) (collect-this-block nil) (lisp-code "")
-               (pkg-name (intern (string-upcase (format nil "OPENCORTEX.SKILLS.~a" skill-base-name)) :keyword)))
+               (pkg-name (intern (string-upcase (format nil "PASSEPARTOUT.SKILLS.~a" skill-base-name)) :keyword)))
           (dolist (line lines)
             (let ((clean-line (string-trim '(#\Space #\Tab #\Return) line)))
               (cond
                 ((uiop:string-prefix-p "#+begin_src lisp" clean-line)
                  (setf in-lisp-block t)
-                 (let ((target (extract-tangle-target clean-line)))
-                   ;; Collect if there's no tangle target (inherits from file) 
-                   ;; or if it's a lisp file and NOT a test.
+                 (let ((target (tangle-target-extract clean-line)))
                    (setf collect-this-block (or (null target)
                                                 (and (not (search "no" target))
                                                      (not (search "/tests" target)))))))
@@ -180,88 +186,99 @@ The ~opencortex~ Skill Engine enables **Late-Binding Intelligence**, allowing th
                  (setf in-lisp-block nil) (setf collect-this-block nil))
                 ((and in-lisp-block collect-this-block)
                  (unless (or (uiop:string-prefix-p ":PROPERTIES:" (string-upcase clean-line))
-                             (uiop:string-prefix-p ":END:" (string-upcase clean-line))
-                             (uiop:string-prefix-p ":ID:" (string-upcase clean-line)))
+                              (uiop:string-prefix-p ":END:" (string-upcase clean-line))
+                              (uiop:string-prefix-p ":ID:" (string-upcase clean-line)))
                    (setf lisp-code (concatenate 'string lisp-code line (string #\Newline))))))))
           (if (= (length lisp-code) 0)
               (setf (skill-entry-status entry) :ready)
               (progn
-                (multiple-value-bind (valid-p err) (validate-lisp-syntax lisp-code)
+                (multiple-value-bind (valid-p err) (lisp-syntax-validate lisp-code)
                   (unless valid-p (error err)))
                 (unless (find-package pkg-name)
-                  (let ((new-pkg (make-package pkg-name :use '(:cl)))) (use-package :opencortex new-pkg)))
+                  (let ((new-pkg (make-package pkg-name :use '(:cl)))) (use-package :passepartout new-pkg)))
                 (let ((*read-eval* nil) (*package* (find-package pkg-name)))
-                  (harness-log "LOADER: Evaluating code for '~a' in package ~a" skill-base-name (package-name *package*))
+                  (log-message "LOADER: Evaluating code for '~a' in package ~a" skill-base-name (package-name *package*))
                   (eval (read-from-string (format nil "(progn ~a)" lisp-code))))
-                
-                ;; Export symbols back to :OPENCORTEX for discoverability and testing
-                (let* ((target-pkg (find-package :opencortex))
+
+                (let* ((target-pkg (find-package :passepartout))
                        (raw-name (string-upcase skill-base-name))
                        (short-name (if (uiop:string-prefix-p "ORG-SKILL-" raw-name)
                                        (subseq raw-name 10)
                                        raw-name)))
-                  (harness-log "LOADER: Scanning package ~a for symbols to export..." (package-name (find-package pkg-name)))
+                  (log-message "LOADER: Scanning package ~a for symbols to export..." (package-name (find-package pkg-name)))
                   (do-symbols (sym (find-package pkg-name))
                     (when (eq (symbol-package sym) (find-package pkg-name))
                       (let ((sn (symbol-name sym)))
                         (when (or (uiop:string-prefix-p raw-name sn)
                                   (uiop:string-prefix-p short-name sn)
-                                  (string-equal sn "DOCTOR-MAIN")
-                                  (string-equal sn "RUN-SETUP-WIZARD"))
-                          (harness-log "LOADER: Exporting ~a to :OPENCORTEX" sn)
-                          ;; Resolve potential name conflicts by uninterning first
+                                  (string-equal sn "DIAGNOSTICS-MAIN")
+                                  (string-equal sn "DIAGNOSTICS-RUN-ALL")
+                                  (string-equal sn "SETUP-WIZARD-RUN"))
+                          (log-message "LOADER: Exporting ~a to :PASSEPARTOUT" sn)
                           (let ((existing (find-symbol sn target-pkg)))
                             (when (and existing (not (eq existing sym)))
                               (unintern existing target-pkg)))
                           (import sym target-pkg)
                           (export sym target-pkg))))))
-                
+
                 (setf (skill-entry-status entry) :ready)))
           t)
       (error (c)
-        (harness-log "LOADER ERROR in skill '~a': ~a" skill-base-name c)
+        (log-message "LOADER ERROR in skill '~a': ~a" skill-base-name c)
         (setf (skill-entry-status entry) :failed) nil))))
-#+end_src
 
-** Initialize (initialize-all-skills)
-#+begin_src lisp
-(defun initialize-all-skills ()
-  "Initializes all skills from SKILLS_DIR."
-  (let* ((env-path (uiop:getenv "SKILLS_DIR"))
-         (skills-dir (uiop:ensure-directory-pathname (or env-path (namestring (merge-pathnames "notes/" (user-homedir-pathname)))))))
-    (unless (uiop:directory-exists-p skills-dir) (return-from initialize-all-skills nil))
-    (let ((sorted-files (topological-sort-skills skills-dir)))
-      (harness-log "LOADER: Initializing ~a skills..." (length sorted-files))
+(defun load-skill-from-lisp (filepath)
+  "Loads a .lisp skill file directly, filtering out in-package forms."
+  (let* ((skill-base-name (pathname-name filepath))
+         (entry (or (gethash skill-base-name *skill-catalog*) (setf (gethash skill-base-name *skill-catalog*) (make-skill-entry :filename skill-base-name)))))
+    (setf (skill-entry-status entry) :loading)
+    (handler-case
+        (let* ((content (skill-package-forms-strip (uiop:read-file-string filepath)))
+               (pkg-name (intern (string-upcase (format nil "PASSEPARTOUT.SKILLS.~a" skill-base-name)) :keyword)))
+          (multiple-value-bind (valid-p err) (lisp-syntax-validate content)
+            (unless valid-p (error err)))
+          (unless (find-package pkg-name)
+            (let ((new-pkg (make-package pkg-name :use '(:cl)))) (use-package :passepartout new-pkg)))
+          (let ((*read-eval* nil) (*package* (find-package pkg-name)))
+            (log-message "LOADER: Loading .lisp skill '~a' in package ~a" skill-base-name (package-name *package*))
+            (with-input-from-string (s content)
+              (loop for form = (read s nil :eof) until (eq form :eof)
+                    do (handler-case (eval form)
+                         (error (c) (log-message "LOADER WARNING in '~a': ~a" skill-base-name c))))))
+          (let* ((target-pkg (find-package :passepartout))
+                 (raw-name (string-upcase skill-base-name))
+                 (short-name (if (uiop:string-prefix-p "ORG-SKILL-" raw-name)
+                                 (subseq raw-name 10)
+                                 raw-name)))
+            (log-message "LOADER: Scanning package ~a for symbols to export..." (package-name (find-package pkg-name)))
+            (do-symbols (sym (find-package pkg-name))
+              (when (eq (symbol-package sym) (find-package pkg-name))
+                (let ((sn (symbol-name sym)))
+                  (when (or (uiop:string-prefix-p raw-name sn)
+                            (uiop:string-prefix-p short-name sn)
+                            (string-equal sn "DIAGNOSTICS-MAIN")
+                                  (string-equal sn "DIAGNOSTICS-RUN-ALL")
+                            (string-equal sn "SETUP-WIZARD-RUN"))
+                    (log-message "LOADER: Exporting ~a to :PASSEPARTOUT" sn)
+                    (let ((existing (find-symbol sn target-pkg)))
+                      (when (and existing (not (eq existing sym)))
+                        (unintern existing target-pkg)))
+                    (import sym target-pkg)
+                    (export sym target-pkg))))))
+          (setf (skill-entry-status entry) :ready))
+      (error (c)
+        (log-message "LOADER ERROR in skill '~a': ~a" skill-base-name c)
+        (setf (skill-entry-status entry) :failed) nil))))
+
+(defun skill-initialize-all ()
+  "Initializes all skills from the XDG data directory."
+  (let* ((data-dir (uiop:ensure-directory-pathname (or (uiop:getenv "PASSEPARTOUT_DATA_DIR") (namestring (merge-pathnames ".local/share/passepartout/" (user-homedir-pathname))))))
+         (skills-dir (merge-pathnames "lisp/" (uiop:ensure-directory-pathname data-dir))))
+    (unless (uiop:directory-exists-p skills-dir) (return-from skill-initialize-all nil))
+    (let ((sorted-files (skill-topological-sort skills-dir)))
+      (log-message "LOADER: Initializing ~a skills..." (length sorted-files))
       (dolist (file sorted-files)
-        (load-skill-from-org file))
-      (harness-log "LOADER: Boot Complete."))))
-#+end_src
-
-* Test Suite
-#+begin_src lisp :tangle tests/boot-sequence-tests.lisp
-(eval-when (:compile-toplevel :load-toplevel :execute)
-  (ql:quickload :fiveam :silent t))
-
-(defpackage :opencortex-boot-tests
-  (:use :cl :fiveam :opencortex)
-  (:export #:boot-suite))
-
-(in-package :opencortex-boot-tests)
-
-(def-suite boot-suite :description "Verification of the Skill Engine loader")
-(in-suite boot-suite)
-
-(test test-topological-sort-basic
-  (let ((tmp-dir "/tmp/opencortex-boot-test/"))
-    (uiop:ensure-all-directories-exist (list tmp-dir))
-    (with-open-file (out (merge-pathnames "org-skill-a.org" tmp-dir) :direction :output :if-exists :supersede)
-      (format out "#+DEPENDS_ON: skill-b-id~%"))
-    (with-open-file (out (merge-pathnames "org-skill-b.org" tmp-dir) :direction :output :if-exists :supersede)
-      (format out ":PROPERTIES:~%:ID: skill-b-id~%:END:~%"))
-    (unwind-protect
-         (let ((sorted (opencortex::topological-sort-skills tmp-dir)))
-           (let ((pos-a (position "org-skill-a" sorted :key #'pathname-name :test #'string-equal))
-                 (pos-b (position "org-skill-b" sorted :key #'pathname-name :test #'string-equal)))
-             (is (< pos-b pos-a))))
-       (uiop:delete-directory-tree (uiop:ensure-directory-pathname tmp-dir) :validate t))))
-#+end_src
+        (if (uiop:string-suffix-p (namestring file) ".lisp")
+            (load-skill-from-lisp file)
+            (load-skill-from-org file)))
+      (log-message "LOADER: Boot Complete."))))

lisp/gateway-cli.lisp

@@ -0,0 +1,10 @@
+(defun gateway-cli-input (text)
+  "Processes raw text from the command line."
+  (inject-stimulus (list :type :EVENT 
+                         :payload (list :sensor :user-input :text text) 
+                         :meta (list :source :CLI))))
+
+(defskill :passepartout-gateway-cli
+  :priority 100
+  :trigger (lambda (ctx) (eq (getf (getf ctx :meta) :source) :CLI))
+  :deterministic (lambda (action ctx) (declare (ignore ctx)) action))

lisp/gateway-llm.lisp

@@ -0,0 +1,43 @@
+(defun gateway-llm-request (&key prompt system-prompt (provider :ollama) model)
+  "Central dispatcher for LLM requests."
+  (let ((backend (gethash provider *probabilistic-backends*)))
+    (if backend
+        (handler-case
+            (funcall backend prompt system-prompt :model model)
+          (error (c)
+            (list :status :error :message (format nil "~a Failure: ~a" provider c))))
+        (list :status :error :message (format nil "Provider ~a not registered" provider)))))
+
+(defskill :passepartout-gateway-llm
+  :priority 100
+  :trigger (lambda (ctx) (getf ctx :user-input))
+  :deterministic (lambda (action ctx) (declare (ignore ctx)) action))
+
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-llm-gateway-tests
+  (:use :cl :passepartout)
+  (:export #:llm-gateway-suite))
+
+(in-package :passepartout-llm-gateway-tests)
+
+(fiveam:def-suite llm-gateway-suite :description "Tests for the LLM Gateway skill")
+(fiveam:in-suite llm-gateway-suite)
+
+(fiveam:test test-llm-gateway-timeout
+  "Tier 2 Chaos: Verify that LLM Gateway handles connection failures gracefully."
+  (let ((old-host (uiop:getenv "OLLAMA_HOST")))
+    (unwind-protect
+         (progn
+           (setf (uiop:getenv "OLLAMA_HOST") "localhost:1")
+           (let ((fn (or (find-symbol "EXECUTE-LLM-REQUEST" :passepartout.gateway-llm)
+                         (find-symbol "EXECUTE-LLM-REQUEST" :passepartout))))
+             (if fn
+                 (let ((result (funcall fn :prompt "hello" :provider :ollama)))
+                   (fiveam:is (eq (getf result :status) :error))
+                   (fiveam:is (uiop:string-prefix-p "Ollama Failure" (getf result :message))))
+                 (fiveam:fail "Could not find EXECUTE-LLM-REQUEST symbol"))))
+      (if old-host
+          (setf (uiop:getenv "OLLAMA_HOST") old-host)
+          (sb-posix:unsetenv "OLLAMA_HOST")))))

lisp/gateway-manager.lisp

@@ -0,0 +1,214 @@
+(defvar *gateway-configs* (make-hash-table :test 'equal)
+  "Maps platform name → plist (:token :thread :interval :enabled)")
+
+(defvar *gateway-registry* (make-hash-table :test 'equal)
+  "Maps platform name → plist (:poll-fn :send-fn :default-interval)")
+
+(defun telegram-get-token ()
+  (vault-get-secret :telegram))
+
+(defun telegram-poll ()
+  "Polls Telegram for new messages and injects them into the harness."
+  (let* ((token (telegram-get-token)))
+    (when token
+      (let* ((last-id (getf (gethash "telegram" *gateway-configs*) :last-update-id 0))
+             (url (format nil "https://api.telegram.org/bot~a/getUpdates?offset=~a"
+                          token (1+ last-id))))
+        (handler-case
+            (let* ((response (dex:get url))
+                   (json (cl-json:decode-json-from-string response))
+                   (updates (cdr (assoc :result json))))
+              (dolist (update updates)
+                (let* ((update-id (cdr (assoc :update--id update)))
+                       (message (cdr (assoc :message update)))
+                       (chat (cdr (assoc :chat message)))
+                       (chat-id (cdr (assoc :id chat)))
+                       (text (cdr (assoc :text message))))
+                  (setf (getf (gethash "telegram" *gateway-configs*) :last-update-id) update-id)
+                  (when (and text chat-id)
+                    (log-message "TELEGRAM: Received message from ~a" chat-id)
+                    (inject-stimulus
+                     (list :type :EVENT
+                           :meta (list :source :telegram :chat-id (format nil "~a" chat-id))
+                           :payload (list :sensor :user-input :text text)))))))
+          (error (c) (log-message "TELEGRAM POLL ERROR: ~a" c))))))
+
+(defun telegram-send (action context)
+  "Sends a message via Telegram."
+  (declare (ignore context))
+  (let* ((payload (getf action :payload))
+         (meta (getf action :meta))
+         (chat-id (or (getf meta :chat-id) (getf payload :chat-id) (getf action :chat-id)))
+         (text (or (getf payload :text) (getf action :text)))
+         (token (telegram-get-token)))
+    (when (and token chat-id text)
+      (log-message "TELEGRAM: Sending message to ~a..." chat-id)
+      (handler-case
+          (let ((url (format nil "https://api.telegram.org/bot~a/sendMessage" token)))
+            (dex:post url
+                      :headers '(("Content-Type" . "application/json"))
+                      :content (cl-json:encode-json-to-string
+                                `((chat_id . ,chat-id) (text . ,text)))))
+        (error (c) (log-message "TELEGRAM ERROR: ~a" c))))))
+
+(defun signal-get-account ()
+  (vault-get-secret :signal))
+
+(defun signal-poll ()
+  "Polls Signal for new messages and injects them into the harness."
+  (let ((account (signal-get-account)))
+    (when account
+      (handler-case
+          (let* ((output (uiop:run-program (list "signal-cli" "-u" account "receive" "--json")
+                                            :output :string :error-output :string :ignore-error-status t))
+                 (lines (cl-ppcre:split "\\n" output)))
+            (dolist (line lines)
+              (when (and line (> (length line) 0))
+                (let* ((json (ignore-errors (cl-json:decode-json-from-string line)))
+                       (envelope (cdr (assoc :envelope json)))
+                       (source (cdr (assoc :source envelope)))
+                       (data-message (cdr (assoc :data-message envelope)))
+                       (text (cdr (assoc :message data-message))))
+                  (when (and source text)
+                    (log-message "SIGNAL: Received message from ~a" source)
+                    (inject-stimulus
+                     (list :type :EVENT
+                           :meta (list :source :signal :chat-id source)
+                           :payload (list :sensor :user-input :text text))))))))
+        (error (c) (log-message "SIGNAL POLL ERROR: ~a" c))))))
+
+(defun signal-send (action context)
+  "Sends a message via Signal."
+  (declare (ignore context))
+  (let* ((payload (getf action :payload))
+         (meta (getf action :meta))
+         (chat-id (or (getf meta :chat-id) (getf payload :chat-id) (getf action :chat-id)))
+         (text (or (getf payload :text) (getf action :text)))
+         (account (signal-get-account)))
+    (when (and account chat-id text)
+      (log-message "SIGNAL: Sending message to ~a..." chat-id)
+      (handler-case
+          (uiop:run-program (list "signal-cli" "-u" account "send" "-m" text chat-id)
+                            :output :string :error-output :string)
+        (error (c) (log-message "SIGNAL ERROR: ~a" c))))))
+
+(defun gateway-registry-initialize ()
+  "Registers all built-in gateway handlers."
+  (setf (gethash "telegram" *gateway-registry*)
+        (list :poll-fn #'telegram-poll
+              :send-fn #'telegram-send
+              :default-interval 3))
+  (setf (gethash "signal" *gateway-registry*)
+        (list :poll-fn #'signal-poll
+              :send-fn #'signal-send
+              :default-interval 5)))
+
+(defun gateway-configured-p (platform)
+  "Returns T if a platform has a stored token."
+  (let ((config (gethash platform *gateway-configs*)))
+    (and config (getf config :token))))
+
+(defun gateway-active-p (platform)
+  "Returns T if a platform's polling thread is alive."
+  (let ((config (gethash platform *gateway-configs*)))
+    (and config
+         (getf config :thread)
+         (bt:thread-alive-p (getf config :thread)))))
+
+(defun gateway-link (platform token)
+  "Links a platform with a token and starts polling."
+  (let ((platform-lc (string-downcase platform)))
+    (unless (gethash platform-lc *gateway-registry*)
+      (error "Unknown platform: ~a. Available: ~{~a~^, ~}"
+             platform (loop for k being the hash-keys of *gateway-registry* collect k)))
+    (when (or (null token) (zerop (length token)))
+      (error "Token cannot be empty"))
+    (log-message "GATEWAY: Linking to ~a..." platform-lc)
+    (gateway-unlink platform-lc)
+    (let* ((registry-entry (gethash platform-lc *gateway-registry*))
+           (interval (or (getf registry-entry :default-interval) 5)))
+      (setf (gethash platform-lc *gateway-configs*)
+            (list :token token :interval interval :enabled t))
+      (vault-set-secret (intern (string-upcase platform-lc) :keyword) token)
+      (gateway-start platform-lc)
+      (log-message "GATEWAY: Successfully linked ~a" platform-lc)
+      (format t "Successfully linked ~a gateway. Token stored securely.~%" platform-lc)
+      t)))
+
+(defun gateway-unlink (platform)
+  "Unlinks a platform and stops its polling thread."
+  (let ((platform-lc (string-downcase platform)))
+    (gateway-stop platform-lc)
+    (remhash platform-lc *gateway-configs*)
+    (log-message "GATEWAY: Unlinked ~a" platform-lc)
+    (format t "Successfully unlinked ~a gateway.~%" platform-lc)
+    t))
+
+(defun gateway-start (platform)
+  "Starts the polling thread for a linked gateway."
+  (let ((platform-lc (string-downcase platform)))
+    (let ((config (gethash platform-lc *gateway-configs*)))
+      (when (and config (getf config :enabled) (not (gateway-active-p platform-lc)))
+        (let ((poll-fn (getf (gethash platform-lc *gateway-registry*) :poll-fn)))
+          (when poll-fn
+            (let ((interval (getf config :interval)))
+              (setf (getf config :thread)
+                    (bt:make-thread
+                     (lambda ()
+                       (loop
+                         (when (getf (gethash platform-lc *gateway-configs*) :enabled)
+                           (funcall poll-fn))
+                         (sleep interval)))
+                     :name (format nil "passepartout-~a-gateway" platform-lc)))
+              (log-message "GATEWAY: Started ~a polling (interval: ~as)" platform-lc interval)))))))))
+
+(defun gateway-stop (platform)
+  "Stops the polling thread for a gateway."
+  (let ((platform-lc (string-downcase platform)))
+    (let ((config (gethash platform-lc *gateway-configs*)))
+      (when (and config (getf config :thread))
+        (when (bt:thread-alive-p (getf config :thread))
+          (log-message "GATEWAY: Stopping ~a polling thread" platform-lc)
+          (bt:destroy-thread (getf config :thread))))
+      (setf (getf config :thread) nil))))
+
+(defun gateway-list ()
+  "Returns a list of all gateways with their status."
+  (loop for platform being the hash-keys of *gateway-registry*
+        collect (let ((configured (gateway-configured-p platform))
+                      (active (gateway-active-p platform)))
+                  (list :platform platform
+                        :configured configured
+                        :active active))))
+
+(defun gateway-list-print ()
+  "Prints a formatted table of gateways."
+  (format t "~%")
+  (format t "  ~20@A ~12@A ~10@A~%" "PLATFORM" "CONFIGURED" "STATUS")
+  (dolist (gw (gateway-list))
+    (format t "  ~20@A ~12@A ~10@A~%"
+            (getf gw :platform)
+            (if (getf gw :configured) "yes" "no")
+            (cond
+              ((getf gw :active) "ACTIVE")
+              ((getf gw :configured) "stopped")
+              (t "not linked"))))
+  (format t "~%"))
+
+(defun gateway-start-all ()
+  "Called at boot to start all configured gateways."
+  (dolist (config (loop for platform being the hash-keys of *gateway-configs*
+                       collect (list platform (gethash platform *gateway-configs*))))
+    (destructuring-bind (platform config) config
+      (when (and (getf config :enabled) (not (gateway-active-p platform)))
+        (gateway-start platform)))))
+
+(register-actuator :telegram #'telegram-send)
+(register-actuator :signal #'signal-send)
+
+(defskill :passepartout-gateway-manager
+  :priority 150
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+
+(gateway-registry-initialize)
+(gateway-start-all)

lisp/gateway-provider.lisp

@@ -0,0 +1,81 @@
+(defparameter *provider-configs*
+  '((:ollama     . (:base-url nil          :key-env nil           :default-model "llama3"))
+    (:openrouter . (:base-url "https://openrouter.ai/api/v1" :key-env "OPENROUTER_API_KEY" :default-model "openrouter/auto"))
+    (:openai     . (:base-url "https://api.openai.com/v1"    :key-env "OPENAI_API_KEY"     :default-model "gpt-4o-mini"))
+    (:anthropic  . (:base-url "https://api.anthropic.com/v1" :key-env "ANTHROPIC_API_KEY"  :default-model "claude-3-5-sonnet-20241022"))
+    (:groq       . (:base-url "https://api.groq.com/openai/v1" :key-env "GROQ_API_KEY"     :default-model "llama-3.1-70b-versatile"))
+    (:gemini     . (:base-url "https://generativelanguage.googleapis.com/v1beta/openai" :key-env "GEMINI_API_KEY" :default-model "gemini-2.0-flash"))
+    (:deepseek   . (:base-url "https://api.deepseek.com/v1"  :key-env "DEEPSEEK_API_KEY"  :default-model "deepseek-chat"))
+    (:nvidia     . (:base-url "https://integrate.api.nvidia.com/v1" :key-env "NVIDIA_API_KEY" :default-model "meta/llama-3.1-405b-instruct"))))
+
+(defun provider-config (provider)
+  "Returns the configuration plist for a provider keyword."
+  (cdr (assoc provider *provider-configs*)))
+
+(defun provider-available-p (provider)
+  "Checks if a provider is configured. Ollama is always considered available."
+  (let* ((config (provider-config provider))
+         (key-env (getf config :key-env))
+         (base-url (getf config :base-url)))
+    (cond ((eq provider :ollama) t)
+          (key-env (let ((key (uiop:getenv key-env))) (and key (> (length key) 0))))
+          (base-url t))))
+
+(defun provider-openai-request (prompt system-prompt &key model (provider :ollama))
+  "Executes a request against any OpenAI-compatible API endpoint."
+  (let* ((config (provider-config provider))
+         (base-url (getf config :base-url))
+         (key-env (getf config :key-env))
+         (default-model (getf config :default-model))
+         (api-key (when key-env (uiop:getenv key-env)))
+         (model-id (or model default-model))
+         (url (if (eq provider :ollama)
+                  (format nil "http://~a/v1/chat/completions" (or (uiop:getenv "OLLAMA_HOST") "localhost:11434"))
+                  (format nil "~a/chat/completions" base-url)))
+         (headers `(("Content-Type" . "application/json")
+                    ,@(when api-key `(("Authorization" . ,(format nil "Bearer ~a" api-key))))
+                    ,@(when (eq provider :openrouter)
+                        `(("HTTP-Referer" . "https://github.com/amrgharbeia/passepartout")
+                          ("X-Title" . "Passepartout")))))
+         (body (cl-json:encode-json-to-string
+                `((model . ,model-id)
+                  (messages . (( (role . "system") (content . ,system-prompt) )
+                               ( (role . "user") (content . ,prompt) )))))))
+    (handler-case
+        (let* ((response (dex:post url :headers headers :content body :connect-timeout 10 :read-timeout 60))
+               (json (cl-json:decode-json-from-string response))
+               (choices (cdr (assoc :choices json)))
+               (first-choice (car choices))
+               (message (cdr (assoc :message first-choice)))
+               (content (cdr (assoc :content message))))
+          (if content
+              (list :status :success :content content)
+              (list :status :error :message (format nil "~a: No content in response (~s)" provider json))))
+      (error (c)
+        (list :status :error :message (format nil "~a Failure: ~a" provider c))))))
+
+(defun provider-register-all ()
+  "Scans environment variables and registers all available LLM backends."
+  (dolist (entry *provider-configs*)
+    (let ((provider (car entry)))
+      (when (provider-available-p provider)
+        (log-message "LLM BACKEND: Registering provider ~a" provider)
+        (register-probabilistic-backend provider
+          (lambda (prompt system-prompt &key model)
+            (provider-openai-request prompt system-prompt :model model :provider provider)))))))
+
+(defun provider-cascade-initialize ()
+  "Reads PROVIDER_CASCADE from env and sets *provider-cascade*."
+  (let ((cascade-str (uiop:getenv "PROVIDER_CASCADE")))
+    (if cascade-str
+        (setf *provider-cascade*
+              (mapcar (lambda (s) (intern (string-upcase (string-trim '(#\Space) s)) :keyword))
+                      (uiop:split-string cascade-str :separator '(#\,))))
+        (setf *provider-cascade* (mapcar #'car *provider-configs*)))))
+
+(provider-register-all)
+(provider-cascade-initialize)
+
+(defskill :passepartout-gateway-provider
+  :priority 50
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))

lisp/gateway-tui.lisp

@@ -0,0 +1,155 @@
+(in-package :cl-user)
+(defpackage :passepartout.gateway-tui
+  (:use :cl :croatoan :usocket :bordeaux-threads)
+  (:export :main))
+(in-package :passepartout.gateway-tui)
+
+(defvar *daemon-host* "localhost")
+
+(defvar *daemon-port* 9105)
+
+(defvar *socket* nil)
+
+(defvar *stream* nil)
+
+(defvar *chat-history* nil)
+
+(defvar *input-buffer* nil)
+
+(defvar *is-running* t)
+
+(defvar *queue-lock* (bt:make-lock "incoming-queue-lock"))
+
+(defvar *incoming* nil)
+
+(defun log-debug (msg &rest args)
+  (ignore-errors
+    (with-open-file (s "/tmp/passepartout-tui-debug.log" :direction :output :if-exists :append :if-does-not-exist :create)
+      (format s "[~a] " (get-universal-time))
+      (apply #'format s msg args)
+      (terpri s)
+      (finish-output s))))
+
+(defun message-queue-push (msg)
+  (bt:with-lock-held (*queue-lock*)
+    (setf *incoming* (append *incoming* (list msg)))))
+
+(defun message-queue-drain ()
+  (bt:with-lock-held (*queue-lock*)
+    (let ((msgs *incoming*))
+      (setf *incoming* nil)
+      msgs)))
+
+(defun chat-render (win h)
+  (when (and win (integerp h))
+    (clear win)
+    (box win 0 0)
+    (let* ((view-height (- h 2))
+           (history (copy-list *chat-history*))
+           (len (length history))
+           (num-to-draw (min len view-height))
+           (slice (subseq history 0 num-to-draw)))
+      (loop for i from 0 below num-to-draw
+            for msg in (reverse slice)
+            do (when msg
+                 (add-string win (format nil "│ ~a" msg) :y (1+ i) :x 2))))
+    (refresh win)))
+
+(defun input-backspace ()
+  (pop *input-buffer*))
+
+(defun input-submit (stream)
+  (let ((cmd (coerce (reverse *input-buffer*) 'string)))
+    (setf *input-buffer* nil)
+    (log-debug "SUBMITTING: '~a'" cmd)
+    (when (> (length cmd) 0)
+      (push (format nil "⬆ ~a" cmd) *chat-history*)
+      (handler-case
+          (progn
+            (if (and stream (open-stream-p stream))
+                (let* ((msg (list :TYPE :EVENT 
+                                 :META (list :SOURCE :tui)
+                                 :PAYLOAD (list :SENSOR :user-input :TEXT cmd)))
+                       (payload (format nil "~s" msg))
+                       (len (length payload)))
+                  (format stream "~6,'0x~a" len payload)
+                  (finish-output stream)
+                  (log-debug "SENT WIRE: ~a" payload))
+                (push "ERROR: Not connected." *chat-history*)))
+        (error (c)
+          (log-debug "SEND ERROR: ~a" c)
+          (push (format nil "ERROR: ~a" c) *chat-history*)
+          (setf *is-running* nil))))
+    (when (string= cmd "/exit") (setf *is-running* nil))
+    (when (string= cmd "/clear") (setf *chat-history* nil))))
+
+(defun reader-start (stream)
+  (bt:make-thread
+   (lambda ()
+     (loop while *is-running* do
+       (handler-case
+           (let* ((len-buf (make-string 6))
+                  (count (read-sequence len-buf stream)))
+             (if (= count 6)
+                 (let* ((msg-len (parse-integer len-buf :radix 16))
+                        (msg-buf (make-string msg-len)))
+                   (read-sequence msg-buf stream)
+                   (log-debug "DAEMON MSG: ~a" msg-buf)
+                   (let ((msg (read-from-string msg-buf)))
+                     (let ((payload (getf msg :payload)))
+                       (cond
+                         ((eq (getf payload :action) :handshake)
+                          (message-queue-push "* Connected *"))
+                         (t
+                          (let ((text (or (getf payload :text) (format nil "~a" payload))))
+                            (message-queue-push (format nil "⬇ ~a" text))))))))
+                 (sleep 0.05)))
+         (error (c)
+           (when *is-running*
+             (log-debug "READER ERROR: ~a" c)
+             (message-queue-push "ERROR: Connection lost.")
+             (setf *is-running* nil))))))
+   :name "passepartout-tui-reader"))
+
+(defun main ()
+  (log-debug "=== START ===")
+  (handler-case
+      (setf *socket* (usocket:socket-connect *daemon-host* *daemon-port*))
+    (error (e) (format t "Offline: ~a~%" e) (return-from main)))
+  (setf *stream* (usocket:socket-stream *socket*))
+  
+  (unwind-protect
+      (with-screen (scr :input-echoing nil :input-blocking nil :enable-colors t)
+        (let* ((h (or (height scr) 24))
+               (w (or (width scr) 80))
+               (chat-h (- h 4))
+               (chat-win (make-instance 'window :height chat-h :width (- w 2) :y 1 :x 1))
+               (input-win (make-instance 'window :height 1 :width (- w 2) :y (- h 2) :x 1)))
+          (setf (input-blocking input-win) nil)
+          (reader-start *stream*)
+          (loop :while *is-running* :do
+            (let ((msgs (message-queue-drain)))
+              (when msgs 
+                (dolist (m msgs) (push m *chat-history*))
+                (chat-render chat-win chat-h)))
+            (let ((ch (get-char input-win)))
+              (when (and ch (not (equal ch -1)))
+                (log-debug "KEY: ~s" ch)
+                (cond
+                  ((or (eql ch 10) (eql ch 13) (eq ch :enter) (eql ch #\Newline) (eql ch #\Return))
+                   (input-submit *stream*)
+                   (chat-render chat-win chat-h))
+                  ((or (eql ch 127) (eql ch 8) (eq ch :backspace) (eql ch #\Backspace))
+                   (input-backspace))
+                  ((characterp ch)
+                   (push ch *input-buffer*))
+                  ((integerp ch)
+                   (let ((converted (code-char ch)))
+                     (when (graphic-char-p converted)
+                       (push converted *input-buffer*))))))
+              (clear input-win)
+              (add-string input-win (format nil "▶ ~a" (coerce (reverse *input-buffer*) 'string)) :y 0 :x 1)
+              (refresh input-win))
+            (sleep 0.01))))
+    (setf *is-running* nil)
+    (when *socket* (ignore-errors (usocket:socket-close *socket*)))))

lisp/lisp

@@ -0,0 +1 @@
+/home/user/memex/projects/opencortex/lisp

lisp/programming-lisp.lisp

@@ -0,0 +1,223 @@
+(defun lisp-structural-check (code)
+  "Checks if parentheses are balanced and the code is readable."
+  (handler-case
+      (let ((*read-eval* nil))
+        (with-input-from-string (s code)
+          (loop for form = (read s nil :eof) until (eq form :eof)))
+        (values t nil))
+    (error (c)
+      (values nil (format nil "Reader Error: ~a" c)))))
+
+(defun lisp-syntactic-check (code)
+  "Checks for valid Lisp syntax beyond just balanced parentheses."
+  (lisp-structural-check code))
+
+(defun lisp-semantic-check (code)
+  "Checks for potentially unsafe forms."
+  (let ((unsafe-tokens '("eval" "load" "uiop:run-program" "sb-ext:run-program" "cl-user::eval")))
+    (loop for token in unsafe-tokens
+          when (search token (string-downcase code))
+          do (return-from lisp-semantic-check (values nil (format nil "Unsafe form detected: ~a" token))))
+    (values t nil)))
+
+(defun lisp-validate (code &key (strict t))
+  "Unified validation gate for Lisp code."
+  (multiple-value-bind (struct-ok struct-err) (lisp-structural-check code)
+    (unless struct-ok
+      (return-from lisp-validate (list :status :error :reason struct-err)))
+    (when strict
+      (multiple-value-bind (sem-ok sem-err) (lisp-semantic-check code)
+        (unless sem-ok
+          (return-from lisp-validate (list :status :error :reason sem-err)))))
+    (list :status :success)))
+
+(defun lisp-eval (code-string &key (package :passepartout))
+  "Evaluates a Lisp string and captures its output/results."
+  (let ((out (make-string-output-stream))
+        (err (make-string-output-stream)))
+    (handler-case
+        (let* ((*standard-output* out)
+               (*error-output* err)
+               (*package* (or (find-package package) (find-package :passepartout)))
+               (result (with-input-from-string (s code-string)
+                         (let ((last-val nil))
+                           (loop for form = (read s nil :eof) until (eq form :eof)
+                                 do (setf last-val (eval form)))
+                           last-val))))
+          (list :status :success
+                :result (format nil "~a" result)
+                :output (get-output-stream-string out)
+                :error (get-output-stream-string err)))
+      (error (c)
+        (list :status :error
+              :reason (format nil "~a" c)
+              :output (get-output-stream-string out)
+              :error (get-output-stream-string err))))))
+
+(defun lisp-format (code-string)
+  "Attempts to format Lisp code using Emacs batch mode if available."
+  (handler-case
+      (let ((tmp-file "/tmp/oc-format-temp.lisp"))
+        (uiop:with-output-file (s tmp-file :if-exists :supersede)
+          (format s "~a" code-string))
+        (multiple-value-bind (out err code)
+            (uiop:run-program (list "emacs" "--batch" tmp-file 
+                                   "--eval" "(indent-region (point-min) (point-max))"
+                                   "--eval" "(princ (buffer-string))")
+                             :output :string :error-output :string :ignore-error-status t)
+          (if (= code 0)
+              out
+              (progn
+                (log-message "FORMAT ERROR: ~a" err)
+                code-string))))
+    (error (c)
+      (log-message "FORMAT EXCEPTION: ~a" c)
+      code-string)))
+
+(defun lisp-extract (code function-name)
+  "Extracts the definition of a specific function from a code string."
+  (let ((*read-eval* nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            when (and (listp form) 
+                      (symbolp (car form))
+                      (member (symbol-name (car form)) '("DEFUN" "DEFMACRO" "DEFMETHOD") :test #'string-equal)
+                      (symbolp (second form))
+                      (string-equal (symbol-name (second form)) function-name))
+            do (return-from lisp-extract (format nil "~s" form))))
+    nil))
+
+(defun lisp-wrap (code target-name wrapper-symbol)
+  "Wraps a specific form in a wrapper form (e.g., wrap in a let)."
+  (let ((*read-eval* nil) (results nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            do (if (and (listp form) 
+                        (symbolp (second form))
+                        (string-equal (symbol-name (second form)) target-name))
+                   (push (list wrapper-symbol form) results)
+                   (push form results))))
+    (format nil "~{~s~^~%~%~}" (nreverse results))))
+
+(defun lisp-list-definitions (code)
+  "Returns a list of names for all top-level definitions (defun, defmacro, etc.)."
+  (let ((*read-eval* nil) (names nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            when (and (listp form) 
+                      (symbolp (car form))
+                      (member (symbol-name (car form)) 
+                              '("DEFUN" "DEFMACRO" "DEFMETHOD" "DEFVAR" "DEFPARAMETER")
+                              :test #'string-equal)
+                      (symbolp (second form)))
+            do (push (second form) names)))
+    (nreverse names)))
+
+(defun lisp-inject (code target-name new-form-string)
+  "Injects a new form into the body of a targeted definition."
+  (let ((*read-eval* nil)
+        (new-form (read-from-string new-form-string))
+        (results nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            do (if (and (listp form) 
+                        (symbolp (car form))
+                        (member (symbol-name (car form)) '("DEFUN" "DEFMACRO" "DEFMETHOD") :test #'string-equal)
+                        (symbolp (second form))
+                        (string-equal (symbol-name (second form)) target-name))
+                   (push (append form (list new-form)) results)
+                   (push form results))))
+    (format nil "~{~s~^~%~%~}" (nreverse results))))
+
+(defun lisp-slurp (code target-name form-to-slurp-string)
+  "Adds a form to the end of a named list or definition (Paredit slurp)."
+  (let ((*read-eval* nil)
+        (to-slurp (read-from-string form-to-slurp-string))
+        (results nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            do (if (and (listp form) 
+                        (symbolp (second form))
+                        (string-equal (symbol-name (second form)) target-name))
+                   (push (append form (list to-slurp)) results)
+                   (push form results))))
+    (format nil "~{~s~^~%~%~}" (nreverse results))))
+
+(defskill :passepartout-programming-lisp
+  :priority 400
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+
+(defpackage :passepartout-utils-lisp-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:utils-lisp-suite))
+
+(in-package :passepartout-utils-lisp-tests)
+
+(def-suite utils-lisp-suite
+  :description "Tests for the Lisp Validator structural, syntactic, and semantic gates")
+
+(in-suite utils-lisp-suite)
+
+(test structural-balanced
+  (is (eq t (passepartout:lisp-structural-check "(+ 1 2)"))))
+
+(test structural-unbalanced-open
+  (multiple-value-bind (ok reason) (passepartout:lisp-structural-check "(+ 1 2")
+    (is (null ok))
+    (is (search "Reader Error" reason))))
+
+(test structural-unbalanced-close
+  (multiple-value-bind (ok reason) (passepartout:lisp-structural-check "+ 1 2)")
+    (is (null ok))
+    (is (search "Reader Error" reason))))
+
+(test syntactic-valid
+  (is (eq t (passepartout:lisp-syntactic-check "(+ 1 2)"))))
+
+(test semantic-safe
+  (is (eq t (passepartout:lisp-semantic-check "(+ 1 2)"))))
+
+(test semantic-blocked-eval
+  (multiple-value-bind (ok reason) (passepartout:lisp-semantic-check "(eval '(+ 1 2))")
+    (is (null ok))
+    (is (search "Unsafe" reason))))
+
+(test unified-success
+  (let ((result (passepartout:lisp-validate "(+ 1 2)" :strict t)))
+    (is (eq (getf result :status) :success))))
+
+(test unified-failure
+  (let ((result (passepartout:lisp-validate "(+ 1 2" :strict nil)))
+    (is (eq (getf result :status) :error))))
+
+(test eval-basic
+  (let ((result (passepartout:lisp-eval "(+ 1 2)")))
+    (is (eq (getf result :status) :success))
+    (is (string= (getf result :result) "3"))))
+
+(test structural-extract
+  (let* ((code "(defun hello () (print \"hi\")) (defun bye () (print \"bye\"))")
+         (extracted (passepartout:lisp-extract code "hello")))
+    (is (not (null extracted)))
+    (let ((form (read-from-string extracted)))
+      (is (eq (car form) 'DEFUN))
+      (is (eq (second form) 'HELLO)))))
+
+(test list-definitions
+  (let ((code "(defun foo () t) (defmacro bar () nil) (defparameter *baz* 10)"))
+    (let ((names (passepartout:lisp-list-definitions code)))
+      (is (member 'FOO names))
+      (is (member 'BAR names))
+      (is (member '*BAZ* names)))))
+
+(test structural-inject
+  (let* ((code "(defun my-fun (x) (print x))")
+         (injected (passepartout:lisp-inject code "my-fun" "(finish-output)")))
+    (let ((form (read-from-string injected)))
+      (is (equal (last form) '((FINISH-OUTPUT)))))))
+
+(test structural-slurp
+  (let* ((code "(defun work () (step-1))")
+         (slurped (passepartout:lisp-slurp code "work" "(step-2)")))
+    (let ((form (read-from-string slurped)))
+      (is (equal (last form) '((STEP-2)))))))

lisp/programming-literate.lisp

@@ -0,0 +1,64 @@
+(defun literate-extract-lisp-blocks (content)
+  "Extracts all #+begin_src lisp ... #+end_src blocks from Org CONTENT.
+Returns a list of block strings."
+  (let ((lines (uiop:split-string content :separator '(#\Newline)))
+        (blocks nil)
+        (in-block nil)
+        (current-block nil))
+    (dolist (line lines)
+      (let ((trimmed (string-trim '(#\Space) line)))
+        (cond
+          ((uiop:string-prefix-p "#+begin_src lisp" trimmed)
+           (setf in-block t current-block nil))
+          ((uiop:string-prefix-p "#+end_src" trimmed)
+           (when in-block
+             (push (format nil "~{~a~^~%~}" (nreverse current-block)) blocks)
+             (setf in-block nil current-block nil)))
+          (in-block
+           (push line current-block)))))
+    (nreverse blocks)))
+
+(defun literate-block-balance-check (org-file)
+  "Verifies that all Lisp source blocks in an Org file have balanced parentheses.
+Returns T if all blocks pass validation, or an error string listing failures."
+  (when (not (uiop:file-exists-p org-file))
+    (return-from literate-block-balance-check
+      (format nil "Org file not found: ~a" org-file)))
+  (let* ((content (uiop:read-file-string org-file))
+         (blocks (literate-extract-lisp-blocks content))
+         (failures nil))
+    (if (null blocks)
+        t
+        (progn
+          (loop for i from 0
+                for block in blocks
+                for (ok reason) = (multiple-value-list
+                                    (lisp-structural-check block))
+                unless ok
+                do (push (format nil "Block ~d: ~a" (1+ i) reason) failures))
+          (if failures
+              (format nil "Unbalanced blocks in ~a:~%~{~a~^~%~}" org-file failures)
+              t)))))
+
+(defun literate-tangle-sync-check (org-file lisp-file)
+  "Verifies that the .lisp file matches the tangled output of the .org file.
+Compares the concatenation of all lisp blocks from the Org file against the
+contents of the Lisp file. Returns T if they match, or an error message."
+  (when (not (uiop:file-exists-p org-file))
+    (return-from literate-tangle-sync-check
+      (format nil "Org file not found: ~a" org-file)))
+  (when (not (uiop:file-exists-p lisp-file))
+    (return-from literate-tangle-sync-check
+      (format nil "Lisp file not found: ~a" lisp-file)))
+  (let* ((org-content (uiop:read-file-string org-file))
+         (org-blocks (literate-extract-lisp-blocks org-content))
+         (tangled (format nil "~{~a~^~%~%~}" org-blocks))
+         (lisp-content (uiop:read-file-string lisp-file)))
+    (if (string= (string-trim '(#\Space #\Newline) tangled)
+                 (string-trim '(#\Space #\Newline) lisp-content))
+        t
+        (format nil "Tangle sync mismatch: ~a does not match ~a" org-file lisp-file))))
+
+(defskill :passepartout-programming-literate
+  :priority 300
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))

lisp/programming-org.lisp

@@ -0,0 +1,240 @@
+(defun org-filetags-extract (content)
+  "Extracts the list of tags from a #+FILETAGS: line."
+  (let ((lines (uiop:split-string content :separator '(#\Newline))))
+    (dolist (line lines)
+      (when (uiop:string-prefix-p "#+FILETAGS:" (string-trim '(#\Space) line))
+        (let ((tag-str (string-trim " :" (subseq (string-trim '(#\Space) line) 10))))
+          (return-from org-filetags-extract
+            (mapcar (lambda (tag) (format nil ":~a" (string-trim '(#\Space) tag)))
+                    (uiop:split-string tag-str :separator '(#\space #\tab))))))))
+  nil)
+
+(defun org-privacy-tag-p (tags-list)
+  "Returns T if any tag in TAGS-LIST matches bouncer-privacy-tags."
+  (let ((privacy-tags (symbol-value (find-symbol "BOUNCER-PRIVACY-TAGS" :passepartout))))
+    (when (and tags-list privacy-tags)
+      (some (lambda (tag)
+              (some (lambda (private-tag)
+                      (string-equal (string-trim '(#\: #\space) tag)
+                                    (string-trim '(#\: #\space) private-tag))
+                    privacy-tags))
+            tags-list)))))
+
+(defun org-privacy-strip (content)
+  "Removes Org headlines whose :TAGS: property contains a privacy-filtered tag.
+Returns the filtered content as a string."
+  (let* ((lines (uiop:split-string content :separator '(#\Newline)))
+         (result-lines nil)
+         (skip-depth nil)
+         (current-tags nil)
+         (in-properties nil))
+    (dolist (line lines)
+      (cond
+        (skip-depth
+         ;; We're inside a skipped subtree
+         (when (and (uiop:string-prefix-p "*" (string-trim '(#\Space) line))
+                    (<= (length (string-trim '(#\Space) line)) skip-depth))
+           (setf skip-depth nil)))
+        ((uiop:string-prefix-p ":PROPERTIES:" (string-trim '(#\Space) line))
+         (setf in-properties t)
+         (push line result-lines))
+        ((uiop:string-prefix-p ":END:" (string-trim '(#\Space) line))
+         (setf in-properties nil)
+         (when current-tags
+           (when (org-privacy-tag-p (reverse current-tags))
+             (setf skip-depth
+                   (length (car (last result-lines
+                                      (1+ (position-if
+                                           (lambda (l)
+                                             (uiop:string-prefix-p "*" (string-trim '(#\Space) l)))
+                                           (reverse result-lines))))))))
+           (setf current-tags nil))
+         (push line result-lines))
+        ((and in-properties (uiop:string-prefix-p ":TAGS:" (string-trim '(#\Space) line)))
+         (let ((tag-val (string-trim '(#\Space) (subseq (string-trim '(#\Space) line) 6))))
+           (setf current-tags (uiop:split-string tag-val :separator '(#\space #\tab))))
+         (push line result-lines))
+        (t
+         (push line result-lines))))
+    (format nil "~{~a~%~}" (nreverse result-lines))))
+
+(defun org-read-file (filepath)
+  "Reads an Org file into a string, applying privacy filtering."
+  (let* ((raw (uiop:read-file-string filepath))
+         (filetags (org-filetags-extract raw)))
+    (if (org-privacy-tag-p filetags)
+        (progn
+          (log-message "UTILS-ORG: Blocked read of ~a — file-level privacy tag(s) ~a" filepath filetags)
+          nil)
+        (org-privacy-strip raw))))
+
+(defun org-write-file (filepath content)
+  "Writes content to an Org file."
+  (uiop:with-output-file (s filepath :if-exists :supersede)
+    (format s "~a" content)))
+
+(defun org-id-generate ()
+  "Generates a new UUID for an Org node."
+  (string-downcase (format nil "~a" (uuid:make-v4-uuid))))
+
+(defun org-id-format (id)
+  "Ensures the ID has the 'id:' prefix."
+  (if (uiop:string-prefix-p "id:" id)
+      id
+      (format nil "id:~a" id)))
+
+(defun org-property-set (ast target-id property value)
+  "Recursively sets a property on a headline with a matching ID in the AST."
+  (let ((type (getf ast :type))
+        (props (getf ast :properties))
+        (contents (getf ast :contents)))
+    (when (and (eq type :HEADLINE) (string= (getf props :ID) target-id))
+      (setf (getf (getf ast :properties) property) value)
+      (return-from org-property-set t))
+    (dolist (child contents)
+      (when (listp child)
+        (when (org-property-set child target-id property value)
+          (return-from org-property-set t)))))
+  nil)
+
+(defun org-todo-set (ast target-id status)
+  "Sets the TODO status of a headline in the AST."
+  (org-property-set ast target-id :TODO status))
+
+(defun org-headline-add (ast parent-id title)
+  "Adds a new headline as a child of the parent-id in the AST."
+  (let* ((type (getf ast :type))
+         (props (getf ast :properties))
+         (id (getf props :ID))
+         (contents (getf ast :contents)))
+    (when (and (eq type :HEADLINE) (string= id parent-id))
+      (let ((new-node (list :type :HEADLINE
+                           :properties (list :ID (org-id-format (org-id-generate))
+                                            :TITLE title)
+                           :contents nil)))
+        (setf (getf ast :contents) (append contents (list new-node)))
+        (return-from org-headline-add t)))
+    (dolist (child contents)
+      (when (listp child)
+        (when (org-headline-add child parent-id title)
+          (return-from org-headline-add t)))))
+  nil)
+
+(defun org-headline-find-by-id (ast id)
+  "Finds a headline by its ID in the AST."
+  (let ((props (getf ast :properties)))
+    (when (string= (getf props :ID) id)
+      (return-from org-headline-find-by-id ast))
+    (dolist (child (getf ast :contents))
+      (when (listp child)
+        (let ((found (org-headline-find-by-id child id)))
+          (when found (return-from org-headline-find-by-id found)))))
+    nil))
+
+(defun org-headline-find-by-title (ast title)
+  "Finds a headline by its title in the AST."
+  (let ((props (getf ast :properties)))
+    (when (string-equal (getf props :TITLE) title)
+      (return-from org-headline-find-by-title ast))
+    (dolist (child (getf ast :contents))
+      (when (listp child)
+        (let ((found (org-headline-find-by-title child title)))
+          (when found (return-from org-headline-find-by-title found)))))
+    nil))
+
+(defun org-modify (filepath old-text new-text)
+  "Replaces all occurrences of OLD-TEXT with NEW-TEXT in filepath.
+Returns T if OLD-TEXT was found and replaced, nil if not found."
+  (when (not (uiop:file-exists-p filepath))
+    (log-message "UTILS-ORG: org-modify: file not found: ~a" filepath)
+    (return-from org-modify nil))
+  (let* ((content (uiop:read-file-string filepath))
+         (pos (search old-text content :test #'string=)))
+    (unless pos
+      (log-message "UTILS-ORG: org-modify: text not found in ~a" filepath)
+      (return-from org-modify nil))
+    (let ((modified (cl-ppcre:regex-replace-all
+                      (cl-ppcre:quote-meta-chars old-text)
+                      content new-text)))
+      (org-write-file filepath modified)
+      (log-message "UTILS-ORG: Modified ~a (~d chars replaced)" filepath (length old-text))
+      t)))
+
+(defun org-ast-render (ast &key (depth 1))
+  "Converts a plist AST node back to Org text.
+AST format: (:TYPE :HEADLINE :properties (:ID ... :TITLE ... :TAGS (...))
+              :contents (child-ast ...))"
+  (let* ((type (getf ast :TYPE))
+         (props (getf ast :properties))
+         (title (or (getf props :TITLE) "Untitled"))
+         (tags (getf props :TAGS))
+         (todo (getf props :TODO-STATE))
+         (children (getf ast :contents))
+         (raw-content (getf ast :raw-content))
+         (stars (make-string depth :initial-element #\*))
+         (output ""))
+    (unless (eq type :HEADLINE)
+      (return-from org-ast-render (or raw-content "")))
+    ;; Headline
+    (setf output (format nil "~a~@[ ~a~] ~a" stars todo title))
+    (when tags
+      (let ((tag-str (format nil "~{~a~^:~}" (mapcar (lambda (t) (string-trim '(#\:) t)) tags))))
+        (setf output (concatenate 'string output (format nil " :~a::~%" tag-str))))
+      (setf output (concatenate 'string output (string #\Newline))))
+    (unless tags
+      (setf output (concatenate 'string output (string #\Newline))))
+    ;; Property drawer
+    (setf output (concatenate 'string output ":PROPERTIES:" (string #\Newline)))
+    (loop for (k v) on props by #'cddr
+          do (unless (or (eq k :TITLE) (eq k :TAGS))
+               (setf output (concatenate 'string output
+                                         (format nil ":~a: ~a~%" k v)))))
+    (setf output (concatenate 'string output ":END:" (string #\Newline)))
+    ;; Content
+    (when raw-content
+      (setf output (concatenate 'string output raw-content (string #\Newline))))
+    ;; Children
+    (dolist (child children)
+      (when (listp child)
+        (setf output (concatenate 'string output
+                                  (org-ast-render child :depth (1+ depth))))))
+    output))
+
+(defskill :passepartout-programming-org
+  :priority 100
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+
+(defpackage :passepartout-utils-org-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:utils-org-suite))
+
+(in-package :passepartout-utils-org-tests)
+
+(def-suite utils-org-suite
+  :description "Tests for Utils Org skill.")
+
+(in-suite utils-org-suite)
+
+(test id-generation
+  (let ((id1 (org-id-generate))
+        (id2 (org-id-generate)))
+    (is (plusp (length id1)))
+    (is (not (string= id1 id2)))))
+
+(test id-format
+  (let ((formatted (org-id-format "abc12345")))
+    (is (search "id:" formatted))))
+
+(test property-setter
+  (let ((ast (list :type :HEADLINE
+                  :properties (list :ID "id:test123" :TITLE "Test")
+                  :contents nil)))
+    (org-property-set ast "id:test123" :STATUS "ACTIVE")
+    (is (string= (getf (getf ast :properties) :STATUS) "ACTIVE"))))
+
+(test todo-setter
+  (let ((ast (list :type :HEADLINE
+                  :properties (list :ID "id:todo001" :TITLE "Task")
+                  :contents nil)))
+    (org-todo-set ast "id:todo001" "DONE")
+    (is (string= (getf (getf ast :properties) :TODO) "DONE"))))

lisp/programming-repl.lisp

@@ -0,0 +1,124 @@
+(in-package :passepartout)
+
+(defvar *repl-package* :passepartout
+  "Default package for REPL evaluations.")
+
+(defvar *repl-history* nil
+  "History of evaluated forms for session continuity.")
+
+(defvar *repl-variables* (make-hash-table :test #'eq)
+  "Cache of bound variables for inspection.")
+
+(defun repl-eval (code-string &key (package *repl-package*))
+  "Evaluate Lisp code and return (values result output error).
+   - result: the return value as string
+   - output: captured stdout
+   - error: error message or nil on success"
+  (let ((out (make-string-output-stream))
+        (err (make-string-output-stream))
+        (pkg (or (find-package package) (find-package :passepartout))))
+    (handler-case
+        (let* ((*standard-output* out)
+               (*error-output* err)
+               (*package* pkg)
+               (*read-eval* nil)
+               (result nil))
+          (with-input-from-string (s code-string)
+            (loop for form = (read s nil :eof) until (eq form :eof)
+                  do (setf result (eval form))))
+          (push code-string *repl-history*)
+          (values
+           (format nil "~a" result)
+           (get-output-stream-string out)
+           nil))
+      (error (c)
+        (values
+         nil
+         (get-output-stream-string out)
+         (format nil "~a" c))))))
+
+(defun repl-inspect (symbol-name &key (package *repl-package*))
+  "Inspect a variable's value and structure."
+  (let* ((pkg (or (find-package package) (find-package :passepartout)))
+         (sym (find-symbol (string-upcase symbol-name) pkg)))
+    (cond
+      ((null sym)
+       (format nil "Symbol ~a not found in package ~a" symbol-name package))
+      ((boundp sym)
+       (let ((val (symbol-value sym)))
+         (format nil "~a = ~a~%Type: ~a~%~%"
+                 sym val (type-of val))))
+      ((fboundp sym)
+       (format nil "~a is a function~%Args: ~a~%"
+               sym (documentation sym 'function)))
+      (t
+       (format nil "~a is unbound" symbol-name)))))
+
+(defun repl-list-vars (&key (package *repl-package*))
+  "List all bound variables in the package."
+  (let* ((pkg (or (find-package package) (find-package :passepartout)))
+         (vars nil))
+    (do-symbols (sym pkg)
+      (when (boundp sym)
+        (push (format nil "~a" sym) vars)))
+    (sort vars #'string<)))
+
+(defun repl-load-file (filepath)
+  "Load a Lisp file into the current image."
+  (handler-case
+      (progn
+        (load filepath)
+        (format nil "Loaded ~a" filepath))
+    (error (c)
+      (format nil "Error loading ~a: ~a" filepath c))))
+
+(defun repl-set-package (package-name)
+  "Set the default package for REPL evaluations."
+  (let ((pkg (find-package (string-upcase package-name))))
+    (if pkg
+        (setf *repl-package* pkg)
+        (format nil "Package ~a not found" package-name))))
+
+(defun repl-help ()
+  "Return available REPL commands."
+  (format nil "~%
+REPL Skill Commands:
+-------------------
+(repl-eval \"code\" :package :passepartout)
+  - Evaluate Lisp code, returns (values result output error)
+
+(repl-inspect \"symbol\" :package :passepartout)
+  - Inspect a variable or function
+
+(repl-list-vars :package :passepartout)
+  - List all bound variables
+
+(repl-load-file \"/path/to/file.lisp\")
+  - Load a file into the image
+
+(repl-set-package :package-name)
+  - Switch default package
+
+(repl-help)
+  - Show this message
+"))
+
+(defun repl-mandate (context)
+  "Returns REPL-first engineering mandate when context involves code editing."
+  (let ((raw (or (proto-get (proto-get context :payload) :text) "")))
+    (when (or (search "org-skill-" raw :test #'char-equal)
+              (and (search ".org" raw :test #'char-equal)
+                   (or (search "defun" raw :test #'char-equal)
+                       (search "tangle" raw :test #'char-equal)
+                       (search "write-file" raw :test #'char-equal)
+                       (search "lisp" raw :test #'char-equal)))
+              (search "defun " raw :test #'char-equal)
+              (search "repl-eval" raw :test #'char-equal)
+              (search "validate" raw :test #'char-equal))
+      (format nil "~%REPL-FIRST MANDATE:~%Before writing any defun to an Org file, prototype it in the REPL first. Set :repl-verified t on the write action. On rejection, fix the error and retry.~%"))))
+
+(defskill :passepartout-programming-repl
+  :priority 200
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil)
+  :deterministic (lambda (action ctx) (declare (ignore action ctx)) nil)
+  :system-prompt-augment #'repl-mandate)

lisp/programming-standards.lisp

@@ -0,0 +1,21 @@
+(defun standards-git-clean-p (dir)
+  "Checks if a directory has uncommitted changes."
+  (let ((status (uiop:run-program (list "git" "-C" (namestring dir) "status" "--porcelain")
+                                 :output :string
+                                 :ignore-error-status t)))
+    (string= "" (string-trim '(#\Space #\Newline #\Tab) status))))
+
+(defun standards-lisp-verify (code)
+  "Enforces Lisp structural and semantic standards using utils-lisp."
+  (let ((result (utils-lisp-validate code :strict t)))
+    (if (eq (getf result :status) :success)
+        t
+        (error (getf result :reason)))))
+
+(defun standards-lisp-format (code)
+  "Ensures Lisp code adheres to formatting standards."
+  (utils-lisp-format code))
+
+(defskill :passepartout-programming-standards
+  :priority 100
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))

lisp/security-dispatcher.lisp

@@ -0,0 +1,327 @@
+(defvar *dispatcher-network-whitelist*
+  '("api.telegram.org" "matrix.org" "googleapis.com" "openai.com" "anthropic.com")
+  "Domains the Bouncer considers safe for outbound connections.")
+
+(defvar *dispatcher-privacy-tags*
+  (let ((env (uiop:getenv "PRIVACY_FILTER_TAGS")))
+    (if env
+        (uiop:split-string env :separator '(#\,))
+        '("@personal")))
+  "Tags marking content as private. Set via PRIVACY_FILTER_TAGS.")
+
+(defvar *dispatcher-protected-paths*
+  '(".env" ".env.example" ".env.local" ".env.production"
+    "*credentials*" "*cred*"
+    "*id_rsa*" "*id_dsa*" "*id_ecdsa*" "*id_ed25519*"
+    "*.pem" "*.key" "*.p12" "*.pfx" "*.asc" "*.gpg" "*.pgp"
+    "secring.*" "pubring.*" "private-keys-v1.d/*"
+    "token*" "*secret*" "*token*"
+    ".netrc" ".git-credentials" "auth.json"
+    ".aws/credentials" ".aws/config"
+    ".kube/config" "kubeconfig"
+    "*.cert" "*.crt" "*.csr"
+    "*password*" "*passwd*")
+  "Path patterns blocked from file reads.")
+
+(defvar *dispatcher-exposure-patterns*
+  '((:pem-key "-----BEGIN +(RSA|DSA|EC|OPENSSH|PGP) +PRIVATE +KEY *-----")
+    (:pgp-key "-----BEGIN +PGP +PRIVATE +KEY +BLOCK-----")
+    (:pgp-public "-----BEGIN +PGP +PUBLIC +KEY +BLOCK-----")
+    (:openai-key "sk-[A-Za-z0-9-]{20,}")
+    (:google-key "AIza[0-9A-Za-z_-]{35}")
+    (:github-token "gh[pousr]_[A-Za-z0-9]{36,}")
+    (:slack-token "xox[baprs]-[A-Za-z0-9-]{24,}")
+    (:env-assignment "[A-Z_]+=[A-Za-z0-9+/=_\\-]{20,}")
+    (:generic-secret "(api|secret|password|token)[ ]*[:=][ ]*[\"']?[A-Za-z0-9_\\-]{16,}"))
+  "Named regex patterns for secret exposure detection.")
+
+(defvar *dispatcher-shell-timeout* 30
+  "Maximum seconds for a shell command before timeout.")
+
+(defvar *dispatcher-shell-max-output* 100000
+  "Maximum characters of shell output to capture.")
+
+(defvar *dispatcher-shell-blocked*
+  '((:destructive-rm    "\\brm\\s+-rf\\s+/")
+    (:destructive-dd    "\\bdd\\s+if=")
+    (:destructive-mkfs  "\\bmkfs\\.")
+    (:destructive-format "\\bmformat\\b")
+    (:disk-wipe         "\\bshred\\s+/dev/")
+    (:disk-wipe-b       "\\bwipefs\\s+/dev/")
+    (:injection-backtick "`[^`]+`")
+    (:injection-subshell "\\$\\([^)]+\\)"))
+  "Destructive and injection patterns blocked in shell commands.")
+
+(defun wildcard-match (pattern path)
+  "Matches PATH against PATTERN where * matches any characters."
+  (let ((regex (cl-ppcre:regex-replace-all
+                "\\*" (cl-ppcre:quote-meta-chars pattern) ".*")))
+    (cl-ppcre:scan regex path)))
+
+(defun dispatcher-check-secret-path (filepath)
+  "Returns the matching pattern if FILEPATH matches a protected path, nil otherwise."
+  (when (and filepath (stringp filepath))
+    (some (lambda (pattern)
+            (when (wildcard-match pattern filepath)
+              pattern))
+          *dispatcher-protected-paths*)))
+
+(defun dispatcher-exposure-scan (text)
+  "Scans TEXT for patterns matching known secret formats.
+Returns a list of matched category keywords."
+  (when (and text (stringp text) (> (length text) 0))
+    (let ((matches nil))
+      (dolist (entry *dispatcher-exposure-patterns*)
+        (let ((name (first entry))
+              (regex (second entry)))
+          (when (cl-ppcre:scan regex text)
+            (push name matches))))
+      matches)))
+
+(defun dispatcher-vault-scan (text)
+  "Scans TEXT for known secrets from the vault."
+  (when (and text (stringp text))
+    (let ((found-secret nil))
+      (maphash (lambda (key val)
+                 (when (and val (stringp val) (> (length val) 5))
+                   (when (search val text)
+                     (setf found-secret key))))
+               *vault-memory*)
+      found-secret)))
+
+(defun dispatcher-check-privacy-tags (tags-list)
+  "Returns T if any tag in TAGS-LIST matches a privacy filter tag."
+  (when (and tags-list (listp tags-list))
+    (some (lambda (tag)
+            (some (lambda (private)
+                    (or (string-equal tag private)
+                        (search private tag :test #'string-equal)))
+                  *dispatcher-privacy-tags*))
+          tags-list)))
+
+(defun dispatcher-check-text-for-privacy (text)
+  "Scans TEXT for leaked privacy-tagged content."
+  (when (and text (stringp text))
+    (let ((lower (string-downcase text)))
+      (some (lambda (tag)
+              (search (string-downcase tag) lower))
+            *dispatcher-privacy-tags*))))
+
+(defun org-blocks-extract (content)
+  "Extracts concatenated Lisp code from #+begin_src lisp blocks in an Org string."
+  (when (and content (stringp content))
+    (let ((lines (uiop:split-string content :separator '(#\Newline)))
+          (in-block nil)
+          (code ""))
+      (dolist (line lines)
+        (let ((clean (string-trim '(#\Space #\Tab) line)))
+          (cond
+            ((search "#+begin_src lisp" clean)
+             (setf in-block t))
+            ((search "#+end_src" clean)
+             (setf in-block nil))
+            (in-block
+             (setf code (concatenate 'string code line (string #\Newline)))))))
+      (when (> (length code) 0) code))))
+
+(defun dispatcher-check-lisp-valid (filepath content)
+  "Validates Lisp syntax when writing .lisp files or Org files with lisp blocks.
+Returns the validation result plist or nil if not applicable."
+  (when (and content (stringp content) (> (length content) 0))
+    (let ((to-validate
+           (cond
+             ((uiop:string-suffix-p filepath ".lisp") content)
+             ((uiop:string-suffix-p filepath ".org") (org-blocks-extract content))
+             (t nil))))
+      (when to-validate
+        (multiple-value-bind (valid-p err) (ignore-errors
+                                            (let ((*read-eval* nil))
+                                              (with-input-from-string (s (format nil "(progn ~a)" to-validate))
+                                                (loop for form = (read s nil :eof) until (eq form :eof)))
+                                              (values t nil)))
+          (unless valid-p
+            (list :status :error :reason err)))))))
+
+(defun org-has-defuns-p (content)
+  "Returns T if the Org content contains any #+begin_src lisp blocks with defuns."
+  (when (and content (stringp content))
+    (search "defun " content :test #'char-equal)))
+
+(defun dispatcher-check-repl-verified (action filepath content)
+  "Warns if writing a defun to an Org file without :repl-verified metadata."
+  (let ((repl-verified (getf action :repl-verified)))
+    (when (and filepath
+               (uiop:string-suffix-p filepath ".org")
+               (org-has-defuns-p content)
+               (not repl-verified))
+      (list :type :LOG
+            :payload (list :level :warn
+                           :text (format nil "Lint: Writing defun to ~a without :repl-verified flag. Did you prototype this in the REPL first?" filepath))))))
+
+(defun dispatcher-check-shell-safety (cmd)
+  "Checks a shell command for destructive patterns and injection vectors.
+Returns a list of matched pattern names or nil if safe."
+  (when (and cmd (stringp cmd) (> (length cmd) 0))
+    (let ((matches nil))
+      (dolist (entry *dispatcher-shell-blocked*)
+        (let ((name (first entry))
+              (regex (second entry)))
+          (when (cl-ppcre:scan regex cmd)
+            (push name matches))))
+      matches)))
+
+(defun dispatcher-check-network-exfil (cmd)
+  "Detects if CMD attempts to contact an unwhitelisted external host."
+  (when (and cmd (stringp cmd))
+    (multiple-value-bind (match regs)
+        (cl-ppcre:scan-to-strings "(http|https|ftp)://([\\w\\.-]+)" cmd)
+      (declare (ignore match))
+      (when regs
+        (let ((domain (aref regs 1)))
+          (not (some (lambda (safe) (search safe domain))
+                    *dispatcher-network-whitelist*)))))))
+
+(defun dispatcher-check (action context)
+  "Security gate for high-risk actions.
+Vectors: lisp validation, secret path, secret content, vault secrets,
+privacy tags, privacy text, shell safety, network exfil, high-impact approval."
+  (declare (ignore context))
+  (let* ((target (proto-get action :target))
+         (payload (proto-get action :payload))
+         (text (or (proto-get payload :text) (proto-get action :text)))
+         (filepath (or (proto-get payload :filepath)
+                       (when (equal (proto-get payload :tool) "read-file")
+                         (proto-get (proto-get payload :args) :filepath))
+                       (when (equal (proto-get payload :tool) "write-file")
+                         (proto-get (proto-get payload :args) :filepath))))
+         (content (when filepath (proto-get (proto-get payload :args) :content)))
+         (cmd (or (proto-get payload :cmd)
+                  (when (and (eq target :tool) (equal (proto-get payload :tool) "shell"))
+                    (proto-get (proto-get payload :args) :cmd))))
+         (approved (proto-get action :approved))
+         (tags (proto-get payload :tags))
+         (lisp-valid (when (and filepath content (not approved))
+                       (dispatcher-check-lisp-valid filepath content)))
+         (repl-lint (when (and filepath content (not approved))
+                     (dispatcher-check-repl-verified action filepath content))))
+    (cond
+      (approved action)
+
+       ;; Vector 0: REPL verification lint (warn, don't block)
+      (repl-lint
+       (log-message "BOUNCER: ~a" (proto-get repl-lint :text))
+       action)
+
+       ;; Vector 1: Lisp syntax validation (block bad lisp writes)
+      ((and lisp-valid (eq (getf lisp-valid :status) :error))
+       (log-message "LINT VIOLATION: Blocked write — lisp syntax error in ~a: ~a" filepath (getf lisp-valid :reason))
+       (list :type :LOG
+             :payload (list :level :error
+                            :text (format nil "Lisp syntax error in ~a: ~a. The write was blocked. Fix the parenthesis balance and retry." filepath (getf lisp-valid :reason)))))
+
+      ;; Vector 2: File read to a protected secret path
+      ((and filepath (dispatcher-check-secret-path filepath))
+       (let ((matched (dispatcher-check-secret-path filepath)))
+         (log-message "SECURITY VIOLATION: Blocked read of protected path '~a' (matched: ~a)" filepath matched)
+         (list :type :LOG
+               :payload (list :level :error
+                              :text (format nil "Action blocked: Attempted read of protected path '~a'" filepath)))))
+
+      ;; Vector 3: Content contains secret patterns
+      ((and text (dispatcher-exposure-scan text))
+       (let ((matched (dispatcher-exposure-scan text)))
+         (log-message "SECURITY VIOLATION: Content contains secret patterns: ~a" matched)
+         (list :type :LOG
+               :payload (list :level :error
+                              :text "Action blocked: Content contains potential secret exposure."))))
+
+      ;; Vector 4: Content contains vault secrets
+      ((and text (dispatcher-vault-scan text))
+       (let ((secret-name (dispatcher-vault-scan text)))
+         (log-message "SECURITY VIOLATION: Blocked potential leak of secret '~a'" secret-name)
+         (list :type :LOG
+               :payload (list :level :error
+                              :text (format nil "Action blocked: Potential exposure of '~a'" secret-name)))))
+
+      ;; Vector 5: Privacy-tagged content in action
+      ((and tags (dispatcher-check-privacy-tags tags))
+       (log-message "PRIVACY VIOLATION: Action contains privacy-tagged content")
+       (list :type :LOG
+             :payload (list :level :warn
+                            :text "Action blocked: Content tagged with privacy filter.")))
+
+      ;; Vector 6: Text leaks privacy tag names
+      ((and text (dispatcher-check-text-for-privacy text))
+       (log-message "PRIVACY WARNING: Text may contain leaked private content")
+       (list :type :LOG
+             :payload (list :level :warn
+                            :text "Action blocked: Text may reference private content.")))
+
+       ;; Vector 7: Shell destructive/injection patterns
+      ((and cmd (dispatcher-check-shell-safety cmd))
+       (let ((matched (dispatcher-check-shell-safety cmd)))
+         (log-message "SHELL VIOLATION: Destructive or injection pattern in command: ~a" matched)
+         (list :type :LOG
+               :payload (list :level :error
+                              :text (format nil "Shell command blocked: contains unsafe pattern ~a" matched)))))
+
+      ;; Vector 8: Network exfiltration
+      ((and (or (eq target :shell)
+                (and (eq target :tool) (equal (proto-get payload :tool) "shell")))
+            (dispatcher-check-network-exfil cmd))
+        (log-message "SECURITY WARNING: External network call detected. Queuing for approval.")
+        (list :type :EVENT :payload (list :sensor :approval-required :action action)))
+
+      ;; Vector 8: High-impact action approval
+      ((or (member target '(:shell))
+           (and (eq target :tool) (member (proto-get payload :tool) '("shell" "repair-file") :test #'string=))
+           (and (eq target :emacs) (eq (proto-get payload :action) :eval)))
+       (log-message "SECURITY: High-impact action requires approval: ~a" (or (proto-get payload :tool) target))
+       (list :type :EVENT :payload (list :sensor :approval-required :action action)))
+      (t action))))
+
+(defun dispatcher-approvals-process ()
+  "Scans for APPROVED flight plans and re-injects them."
+  (let ((approved-nodes (list-objects-with-attribute :TODO "APPROVED"))
+        (found-any nil))
+    (dolist (node approved-nodes)
+      (let* ((attrs (org-object-attributes node))
+             (tags (getf attrs :TAGS))
+             (action-str (getf attrs :ACTION)))
+        (when (and (member "FLIGHT_PLAN" tags :test #'string-equal) action-str)
+          (log-message "BOUNCER: Found approved flight plan '~a'. Re-injecting..." (org-object-id node))
+          (let ((action (ignore-errors (read-from-string action-str))))
+            (when action
+              (setf (getf action :approved) t)
+              (inject-stimulus action)
+              (setf (getf (org-object-attributes node) :TODO) "DONE")
+              (setq found-any t))))))
+    found-any))
+
+(defun dispatcher-flight-plan-create (blocked-action)
+  "Creates a Flight Plan node for manual approval."
+  (let ((id (org-id-new)))
+    (log-message "BOUNCER: Creating flight plan node '~a'..." id)
+    (list :type :REQUEST :target :emacs
+          :payload (list :action :insert-node :id id
+                         :attributes (list :TITLE "Flight Plan: High-Risk Action"
+                                           :TODO "PLAN" :TAGS '("FLIGHT_PLAN")
+                                           :ACTION (format nil "~s" blocked-action))))))
+
+(defun dispatcher-gate (action context)
+  "Main deterministic gate for the Bouncer skill."
+  (let* ((payload (getf context :payload))
+         (sensor (getf payload :sensor)))
+    (case sensor
+      (:approval-required
+       (dispatcher-flight-plan-create (getf payload :action)))
+      (:heartbeat
+       (dispatcher-approvals-process)
+       (if action (dispatcher-check action context) action))
+      (otherwise
+       (if action (dispatcher-check action context) action)))))
+
+(defskill :passepartout-security-dispatcher
+  :priority 150
+  :trigger (lambda (ctx) (declare (ignore ctx)) t)
+  :deterministic #'dispatcher-gate)

lisp/security-permissions.lisp

@@ -0,0 +1,13 @@
+(defvar *permission-table* (make-hash-table :test 'equal))
+
+(defun permission-set (tool-name level)
+  "Sets the permission level for a tool."
+  (setf (gethash (string-downcase (string tool-name)) *permission-table*) level))
+
+(defun permission-get (tool-name)
+  "Retrieves the permission level for a tool. Defaults to :ask."
+  (gethash (string-downcase (string tool-name)) *permission-table* :ask))
+
+(defskill :passepartout-security-permissions
+  :priority 600
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))

lisp/security-policy.lisp

@@ -0,0 +1,17 @@
+(defun policy-compliance-check (action context)
+  "Enforces constitutional invariants on proposed actions."
+  (declare (ignore context))
+  (let* ((payload (proto-get action :payload))
+         (explanation (proto-get payload :explanation)))
+    (if (and explanation (stringp explanation) (> (length explanation) 10))
+        action
+        (progn
+          (log-message "POLICY VIOLATION: Action lacks sufficient explanation.")
+          (list :type :LOG
+                :payload (list :level :warn
+                              :text "Action blocked: Missing or insufficient :explanation. Please justify your reasoning."))))))
+
+(defskill :passepartout-security-policy
+  :priority 500
+  :trigger (lambda (ctx) (declare (ignore ctx)) t)
+  :deterministic #'policy-compliance-check)

lisp/security-validator.lisp

@@ -0,0 +1,13 @@
+(defun validator-protocol-check (msg)
+  "Enforces structural schema compliance on protocol messages."
+  (validate-communication-protocol-schema msg))
+
+(defskill :passepartout-security-validator
+  :priority 95
+  :trigger (lambda (ctx) (declare (ignore ctx)) t)
+  :deterministic (lambda (action ctx)
+                   (declare (ignore ctx))
+                   (handler-case
+                       (progn (validator-protocol-check action) action)
+                     (error (c)
+                       (list :type :LOG :payload (list :level :error :text (format nil "Protocol Violation: ~a" c)))))))

lisp/security-vault.lisp

@@ -0,0 +1,33 @@
+(defvar *vault-memory* (make-hash-table :test 'equal)
+  "In-memory cache of sensitive credentials.")
+
+(defun vault-get (provider &key (type :api-key))
+  "Retrieves a credential from the vault or environment."
+  (let* ((key (format nil "~a-~a" provider type))
+         (val (gethash key *vault-memory*)))
+    (if val
+        val
+        (let ((env-var (case provider
+                          (:gemini "GEMINI_API_KEY")
+                          (:openai "OPENAI_API_KEY")
+                          (:anthropic "ANTHROPIC_API_KEY")
+                          (:openrouter "OPENROUTER_API_KEY")
+                          (otherwise nil))))
+          (when env-var (uiop:getenv env-var))))))
+
+(defun vault-set (provider secret &key (type :api-key))
+  "Stores a secret in the vault."
+  (let ((key (format nil "~a-~a" provider type)))
+    (setf (gethash key *vault-memory*) secret)))
+
+(defun vault-get-secret (provider)
+  "Retrieves a stored secret or token for a gateway provider."
+  (vault-get provider :type :secret))
+
+(defun vault-set-secret (provider secret)
+  "Stores a secret or token for a gateway provider."
+  (vault-set provider secret :type :secret))
+
+(defskill :passepartout-security-vault
+  :priority 600
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))

lisp/system-actuator-shell.lisp

@@ -0,0 +1,27 @@
+(defun actuator-shell-execute (action context)
+  "Executes a bash command with timeout (via timeout(1)) and output limit."
+  (declare (ignore context))
+  (let* ((payload (getf action :payload))
+         (cmd (getf payload :cmd))
+         (timeout-sym (find-symbol "*BOUNCER-SHELL-TIMEOUT*" :passepartout))
+         (timeout (or (getf payload :timeout) (if timeout-sym (symbol-value timeout-sym) 30)))
+         (max-sym (find-symbol "*BOUNCER-SHELL-MAX-OUTPUT*" :passepartout))
+         (max-output (or (getf payload :max-output) (if max-sym (symbol-value max-sym) 100000)))
+         (wrapped-cmd (format nil "timeout ~a bash -c ~s" timeout cmd)))
+    (log-message "ACT [Shell]: ~a (timeout: ~as)" cmd timeout)
+    (multiple-value-bind (out err code)
+        (uiop:run-program (list "bash" "-c" wrapped-cmd)
+                          :output :string :error-output :string
+                          :ignore-error-status t)
+      (cond
+        ((= code 124) (format nil "ERROR: Command timed out after ~a seconds" timeout))
+        ((> (length out) max-output)
+         (format nil "~a~%... (output truncated to ~a chars)" (subseq out 0 max-output) max-output))
+        ((= code 0) out)
+        (t (format nil "ERROR [~a]: ~a" code err))))))
+
+(register-actuator :shell #'actuator-shell-execute)
+
+(defskill :passepartout-system-actuator-shell
+  :priority 50
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))

lisp/system-archivist.lisp

@@ -0,0 +1,236 @@
+(defvar *archivist-last-scribe* 0
+  "Universal time of the last Scribe distillation run.")
+
+(defvar *archivist-last-gardener* 0
+  "Universal time of the last Gardener scan run.")
+
+(defvar *archivist-gardener-interval* 86400
+  "Seconds between Gardener scans. Default: 24 hours.")
+
+(defun archivist-scribe-distill ()
+  "Distills daily log entries into atomic notes. Reads the Memex daily/
+directory for log files modified since the last run, extracts headlines
+as potential note seeds, and creates atomic note files in notes/ with
+backlinks to the source daily entry."
+  (let* ((memex-dir (or (uiop:getenv "MEMEX_DIR")
+                        (namestring (merge-pathnames "memex/" (user-homedir-pathname)))))
+         (daily-dir (merge-pathnames "daily/" memex-dir))
+         (notes-dir (merge-pathnames "notes/" memex-dir))
+         (now (get-universal-time))
+         (notes-created 0))
+    (unless (uiop:directory-exists-p daily-dir)
+      (log-message "ARCHIVIST: Daily directory not found: ~a" daily-dir)
+      (return-from archivist-scribe-distill nil))
+    (ensure-directories-exist notes-dir)
+    (handler-case
+        (let ((daily-files (uiop:directory-files daily-dir "*.org")))
+          (dolist (file daily-files)
+            (let* ((filepath (namestring file))
+                   (file-mtime (ignore-errors (file-write-date filepath))))
+              (when (and file-mtime (> file-mtime *archivist-last-scribe*))
+                ;; Extract headlines from daily log
+                (let* ((content (handler-case (uiop:read-file-string filepath)
+                                  (error () nil)))
+                       (headlines (when content
+                                    (archivist-extract-headlines content))))
+                  (dolist (hl headlines)
+                    (when (archivist-create-note hl notes-dir filepath)
+                      (incf notes-created))))))))
+      (error (c)
+        (log-message "ARCHIVIST: Scribe error: ~a" c)))
+    (setf *archivist-last-scribe* now)
+    (when (> notes-created 0)
+      (log-message "ARCHIVIST: Scribe created ~d atomic notes" notes-created))
+    notes-created))
+
+(defun archivist-extract-headlines (content)
+  "Extracts first-level headlines and their content from Org text.
+Returns a list of plists: (:title <str> :content <str> :tags <list>)."
+  (let ((lines (uiop:split-string content :separator '(#\Newline)))
+        (results nil)
+        (current-title nil)
+        (current-lines nil)
+        (current-tags nil)
+        (in-properties nil))
+    (dolist (line lines)
+      (let ((trimmed (string-trim '(#\Space) line)))
+        (when (string= trimmed ":PROPERTIES:")
+          (setf in-properties t))
+        (when (string= trimmed ":END:")
+          (setf in-properties nil))
+        (when (and in-properties (uiop:string-prefix-p ":TAGS:" trimmed))
+          (setf current-tags
+                (mapcar (lambda (t) (string-trim '(#\Space) t))
+                        (uiop:split-string (string-trim '(#\Space) (subseq trimmed 6))
+                                           :separator '(#\space #\tab)))))
+        (cond
+          ;; First-level headline
+          ((and (uiop:string-prefix-p "* " trimmed)
+                (not (uiop:string-prefix-p "**" trimmed)))
+           ;; Save previous
+           (when current-title
+             (push (list :title current-title
+                         :content (format nil "~{~a~^~%~}" (nreverse current-lines))
+                         :tags current-tags)
+                   results))
+           (setf current-title (string-trim '(#\* #\Space) trimmed)
+                 current-lines nil
+                 current-tags nil
+                 in-properties nil))
+          ;; Content lines under current headline
+          (current-title
+           (unless (or (uiop:string-prefix-p "*" trimmed)
+                       (string= trimmed ":PROPERTIES:")
+                       (string= trimmed ":END:"))
+             (push line current-lines))))))
+    ;; Save last headline
+    (when current-title
+      (push (list :title current-title
+                  :content (format nil "~{~a~^~%~}" (nreverse current-lines))
+                  :tags current-tags)
+            results))
+    (nreverse results)))
+
+(defun archivist-headline-to-filename (title)
+  "Converts a headline title to a valid atomic note filename.
+Replaces spaces and special chars with underscores, downcases."
+  (let* ((clean (cl-ppcre:regex-replace-all "[^a-zA-Z0-9 ]" title ""))
+         (underscored (cl-ppcre:regex-replace-all "\\s+" clean "_"))
+         (lowered (string-downcase underscored)))
+    (if (> (length lowered) 100)
+        (subseq lowered 0 100)
+        lowered)))
+
+(defun archivist-create-note (headline notes-dir source-filepath)
+  "Creates an atomic note from a headline plist in the notes/ directory.
+Headline is a plist (:title <str> :content <str> :tags <list>).
+Returns T if note was created, nil if it already exists."
+  (let* ((title (getf headline :title))
+         (content (or (getf headline :content) ""))
+         (tags (getf headline :tags))
+         (filename (archivist-headline-to-filename title))
+         (filepath (merge-pathnames (format nil "~a.org" filename) notes-dir))
+         (source-basename (enough-namestring source-filepath
+                                             (merge-pathnames "" notes-dir))))
+    (when (uiop:file-exists-p filepath)
+      (return-from archivist-create-note nil))
+    (handler-case
+        (uiop:with-output-file (s filepath :if-exists :nil)
+          (format s "#+TITLE: ~a~%" title)
+          (format s "#+FILETAGS: :atomic:note:~:[~;~{~a~^:~}~]~%" tags tags)
+          (format s "~%* ~a~%" title)
+          (format s ":PROPERTIES:~%")
+          (format s ":CREATED: ~a~%" (org-id-generate))
+          (format s ":SOURCE: ~a~%" source-basename)
+          (format s ":END:~%")
+          (format s "~%~a~%" content)
+          (format s "~%* Backlinks~%")
+          (format s "- Source: [[file:~a][~a]]~%" source-basename
+                  (file-namestring source-filepath)))
+      (log-message "ARCHIVIST: Created note ~a" (namestring filepath))
+      t)
+    (error (c)
+      (log-message "ARCHIVIST: Failed to create note ~a: ~a" filepath c)
+      nil)))
+
+(defun archivist-gardener-scan ()
+  "Scans the Memex for broken file links and orphaned memory objects.
+Broken links are =[[file:...]]= references whose target file does not exist.
+Orphaned objects are =memory-object= entries whose =:parent-id= references
+a deleted object. Returns a plist (:broken-links <count> :orphans <count>)."
+  (let* ((memex-dir (or (uiop:getenv "MEMEX_DIR")
+                        (namestring (merge-pathnames "memex/" (user-homedir-pathname)))))
+         (org-files (archivist-find-org-files memex-dir))
+         (broken-links 0)
+         (orphans 0))
+    ;; Scan for broken links
+    (dolist (file org-files)
+      (handler-case
+          (let* ((content (uiop:read-file-string file))
+                 (links (archivist-extract-file-links content)))
+            (dolist (link links)
+              (let ((target (merge-pathnames link (make-pathname :directory
+                                  (pathname-directory file)))))
+                (unless (uiop:file-exists-p target)
+                  (log-message "ARCHIVIST: Broken link in ~a -> ~a"
+                               (enough-namestring file memex-dir) link)
+                  (incf broken-links)))))
+        (error ()
+          (log-message "ARCHIVIST: Could not read ~a" file))))
+    ;; Scan for orphaned memory objects
+    (handler-case
+        (let ((deleted-ids (make-hash-table :test 'equal)))
+          ;; In practice, we check if parent-id points to a non-existent object
+          (maphash (lambda (id obj)
+                     (declare (ignore obj))
+                     (setf (gethash id deleted-ids) t))
+                   (if (boundp '*memory-store*)
+                       (symbol-value '*memory-store*)
+                       (make-hash-table :test 'equal)))
+          (let ((store (if (boundp '*memory-store*)
+                           (symbol-value '*memory-store*)
+                           (make-hash-table :test 'equal))))
+            (maphash (lambda (id obj)
+                       (let ((parent (memory-object-parent-id obj)))
+                         (when (and parent (not (gethash parent store)))
+                           (log-message "ARCHIVIST: Orphaned object ~a (parent ~a not found)"
+                                        id parent)
+                           (incf orphans))))
+                     store)))
+      (error ()
+        (log-message "ARCHIVIST: Memory store not available for orphan scan")))
+    (setf *archivist-last-gardener* (get-universal-time))
+    (list :broken-links broken-links :orphans orphans)))
+
+(defun archivist-find-org-files (memex-dir)
+  "Recursively finds all .org files under memex-dir, up to 3 levels deep."
+  (let ((files nil))
+    (labels ((walk (dir depth)
+               (when (and (uiop:directory-exists-p dir) (< depth 3))
+                 (handler-case
+                     (dolist (entry (uiop:subdirectories dir))
+                       (walk entry (1+ depth)))
+                   (error ()))
+                 (handler-case
+                     (dolist (file (uiop:directory-files dir "*.org"))
+                       (push (namestring file) files))
+                   (error ())))))
+      (walk memex-dir 0))
+    files))
+
+(defun archivist-extract-file-links (content)
+  "Extracts all =[[file:...]]= link targets from Org content.
+Returns a list of link target strings."
+  (let ((links nil))
+    (cl-ppcre:do-register-groups (target)
+        ("\\[\\[file:([^\\]]+)\\]\\[" content)
+      (unless (search "::" target)  ;; skip internal anchors
+        (pushnew target links :test #'string=)))
+    ;; Also handle bare [[file:target]] links
+    (cl-ppcre:do-register-groups (target)
+        ("\\[\\[file:([^\\]]+)\\]\\]" content)
+      (unless (search "::" target)
+        (pushnew target links :test #'string=)))
+    links))
+
+(defun archivist-run (context)
+  "Runs the archivist maintenance cycle. Checks Scribe and Gardener schedules
+and dispatches as needed. Called by the deterministic gate."
+  (declare (ignore context))
+  (let ((now (get-universal-time)))
+    ;; Scribe runs every 6 hours (21600 seconds)
+    (when (>= (- now *archivist-last-scribe*) 21600)
+      (ignore-errors (archivist-scribe-distill)))
+    ;; Gardener runs every 24 hours
+    (when (>= (- now *archivist-last-gardener*) *archivist-gardener-interval*)
+      (ignore-errors
+        (let ((result (archivist-gardener-scan)))
+          (when (> (getf result :broken-links) 0)
+            (log-message "ARCHIVIST: Gardener found ~d broken links, ~d orphans"
+                         (getf result :broken-links) (getf result :orphans)))))))
+  nil)
+
+(defskill :passepartout-system-archivist
+  :priority 100
+  :trigger (lambda (ctx) (eq (getf (getf ctx :payload) :sensor) :heartbeat))
+  :deterministic #'archivist-run)

lisp/system-config.lisp

@@ -0,0 +1,243 @@
+(defun config-directory ()
+  "Returns the absolute path to the opencortex config directory."
+  (let ((xdg (uiop:getenv "OC_CONFIG_DIR")))
+    (if xdg xdg (namestring (merge-pathnames ".config/passepartout/" (user-homedir-pathname))))))
+
+(defun config-file-path ()
+  "Returns the path to the .env configuration file."
+  (merge-pathnames ".env" (config-directory)))
+
+(defun config-directory-ensure ()
+  "Creates the configuration directory if it does not exist."
+  (ensure-directories-exist (config-directory)))
+
+(defun config-read ()
+  "Reads the .env config file and returns an alist of KEY=VALUE pairs."
+  (let ((config-file (config-file-path)))
+    (when (uiop:file-exists-p config-file)
+      (let ((lines (uiop:read-file-lines config-file))
+            (result nil))
+        (dolist (line lines)
+          (when (and line (> (length line) 0)
+                     (not (uiop:string-prefix-p "#" line)))
+            (let ((eq-pos (position #\= line)))
+              (when eq-pos
+                (let ((key (string-trim " " (subseq line 0 eq-pos)))
+                      (value (string-trim " " (subseq line (1+ eq-pos)))))
+                  (push (cons key value) result))))))
+        (nreverse result)))))
+
+(defun config-write (config-alist)
+  "Writes the config alist to the .env file."
+  (config-directory-ensure)
+  (let ((config-file (config-file-path)))
+    (with-open-file (stream config-file :direction :output :if-exists :supersede :if-does-not-exist :create)
+      (format stream "# Passepartout Configuration~%")
+      (format stream "# Generated by opencortex setup~%~%")
+      (dolist (pair config-alist)
+        (format stream "~a=~a~%" (car pair) (cdr pair))))))
+
+(defun config-get (key)
+  "Gets a config value by key."
+  (let ((config (config-read)))
+    (cdr (assoc key config :test #'string=))))
+
+(defun config-set (key value)
+  "Sets a config value and saves to file."
+  (let ((config (config-read))
+        (pair (cons key value)))
+    (let ((existing (assoc key config :test #'string=)))
+      (if existing
+          (setf (cdr existing) value)
+          (push pair config))
+      (config-write config))))
+
+(defun prompt (prompt-text)
+  "Simple prompt that returns user input as a string."
+  (format t "~a" prompt-text)
+  (finish-output)
+  (read-line))
+
+(defun prompt-yes-no (prompt-text)
+  "Prompts yes/no question. Returns T for yes, nil for no."
+  (let ((response (prompt (format nil "~a [Y/n]: " prompt-text))))
+    (or (string= response "")
+        (string-equal response "Y")
+        (string-equal response "y")
+        (string-equal response "yes"))))
+
+(defun prompt-choice (prompt-text options)
+  "Prompts user to choose from a list of options. Returns the chosen option or nil."
+  (format t "~a~%" prompt-text)
+  (let ((i 1))
+    (dolist (opt options)
+      (format t "  ~a) ~a~%" i opt)
+      (incf i)))
+  (let ((response (prompt "Choice")))
+    (let ((num (ignore-errors (parse-integer response))))
+      (when (and num (<= 1 num) (>= (length options) num))
+        (nth (1- num) options)))))
+
+(defparameter *available-providers*
+  '(("OpenAI" . "OPENAI_API_KEY")
+    ("Anthropic" . "ANTHROPIC_API_KEY")
+    ("OpenRouter" . "OPENROUTER_API_KEY")
+    ("Groq" . "GROQ_API_KEY")
+    ("Gemini" . "GEMINI_API_KEY")
+    ("Ollama (local)" . "OLLAMA_URL")))
+
+(defun setup-llm-providers ()
+  "Interactive wizard for configuring LLM providers."
+  (format t "~%~%")
+  (format t "==================================================~%")
+  (format t " LLM Provider Configuration~%")
+  (format t "==================================================~%~%")
+  
+  (let ((current-providers (loop for (name . key) in *available-providers*
+                                when (config-get key)
+                                collect name)))
+    (when current-providers
+      (format t "Current providers: ~{~a~^, ~}~%~%" current-providers))
+    
+    (format t "Available providers:~%")
+    (dolist (p *available-providers*)
+      (format t "  - ~a~%" (car p)))
+    (format t "~%")
+    
+    (when (prompt-yes-no "Configure a new provider?")
+      (let ((chosen (prompt-choice "Select provider:" (mapcar #'car *available-providers*))))
+        (when chosen
+          (let ((env-key (cdr (assoc chosen *available-providers* :test #'string=))))
+            (if (string= chosen "Ollama (local)")
+                (progn
+                  (format t "Enter Ollama URL (e.g., http://localhost:11434): ")
+                  (let ((url (read-line)))
+                    (config-set env-key url)
+                    (format t "✓ Ollama configured at ~a~%" url)))
+                (progn
+                  (format t "Enter API key for ~a: " chosen)
+                  (let ((key (read-line)))
+                    (config-set env-key key)
+                    (format t "✓ ~a API key saved~%" chosen)))))))))
+  
+  (format t "~%"))
+
+(defun setup-add-provider ()
+  "Entry point for adding a single provider (called from CLI)."
+  (setup-llm-providers))
+
+(defun setup-gateways ()
+  "Interactive wizard for configuring external gateways."
+  (format t "~%~%")
+  (format t "==================================================~%")
+  (format t " Gateway Configuration~%")
+  (format t "==================================================~%~%")
+  
+  (format t "Available gateways:~%")
+  (format t "  - Slack (https://api.slack.com/)~%")
+  (format t "  - Discord (https://discord.com/developers/)~%")
+  (format t "~%")
+  
+  (when (prompt-yes-no "Configure a gateway?")
+    (let ((chosen (prompt-choice "Select platform:" '("Slack" "Discord"))))
+      (when chosen
+        (let ((token (prompt (format nil "Enter ~a bot token: " chosen))))
+          (if (string= chosen "Slack")
+              (config-set "SLACK_TOKEN" token)
+              (config-set "DISCORD_TOKEN" token))
+          (format t "✓ ~a gateway configured~%" chosen)))))
+  
+  (format t "~%"))
+
+(defun setup-skills ()
+  "Interactive wizard for enabling/disabling skills."
+  (format t "~%~%")
+  (format t "==================================================~%")
+  (format t " Skill Management~%")
+  (format t "==================================================~%~%")
+  
+  (format t "Note: Skill management is not yet implemented.~%")
+  (format t "Skills are automatically loaded from ~a~%" (or (uiop:getenv "PASSEPARTOUT_DATA_DIR") "~/.local/share/passepartout"))
+  (format t "~%"))
+
+(defun setup-memory ()
+  "Interactive wizard for memory settings."
+  (format t "~%~%")
+  (format t "==================================================~%")
+  (format t " Memory Settings~%")
+  (format t "==================================================~%~%")
+  
+  (let ((auto-save (prompt "Auto-save interval in seconds [300]:")))
+    (when (and auto-save (> (length auto-save) 0))
+      (config-set "MEMORY_AUTO_SAVE_INTERVAL" auto-save)))
+  
+  (let ((history (prompt "History retention in lines [1000]:")))
+    (when (and history (> (length history) 0))
+      (config-set "MEMORY_HISTORY_RETENTION" history)))
+  
+  (format t "✓ Memory settings saved~%")
+  (format t "~%"))
+
+(defun setup-network ()
+  "Interactive wizard for network settings."
+  (format t "~%~%")
+  (format t "==================================================~%")
+  (format t " Network Settings~%")
+  (format t "==================================================~%~%")
+  
+  (let ((timeout (prompt "Request timeout in seconds [30]:")))
+    (when (and timeout (> (length timeout) 0))
+      (config-set "REQUEST_TIMEOUT" timeout)))
+  
+  (let ((proxy (prompt "Proxy URL (leave empty for none) []:")))
+    (when (and proxy (> (length proxy) 0))
+      (config-set "HTTP_PROXY" proxy)))
+  
+  (format t "✓ Network settings saved~%")
+  (format t "~%"))
+
+(defun setup-wizard-run ()
+  "Main entry point for the interactive setup wizard."
+  (format t "~%~%")
+  (format t "╔═══════════════════════════════════════════════════╗~%")
+  (format t "║         Passepartout Setup Wizard                   ║~%")
+  (format t "╚═══════════════════════════════════════════════════╝~%")
+  (format t "~%")
+  (format t "This wizard will help you configure:~%")
+  (format t "  1. LLM Providers (OpenAI, Anthropic, etc.)~%")
+  (format t "  2. Gateway Links (Slack, Discord)~%")
+  (format t "  3. Memory Settings~%")
+  (format t "  4. Network Settings~%")
+  (format t "~%")
+  
+  (config-directory-ensure)
+  
+  ;; Step 1: LLM Providers
+  (when (prompt-yes-no "Configure LLM providers?")
+    (setup-llm-providers))
+  
+  ;; Step 2: Gateways
+  (when (prompt-yes-no "Configure gateways?")
+    (setup-gateways))
+  
+  ;; Step 3: Memory
+  (when (prompt-yes-no "Configure memory settings?")
+    (setup-memory))
+  
+  ;; Step 4: Network
+  (when (prompt-yes-no "Configure network settings?")
+    (setup-network))
+  
+  ;; Summary
+  (format t "==================================================~%")
+  (format t " Setup Complete!~%")
+  (format t "==================================================~%")
+  (format t "~%")
+  (format t "Configuration saved to: ~a~%" (config-file-path))
+  (format t "~%")
+  (format t "To verify your setup, run: passepartout doctor~%")
+  (format t "~%"))
+
+(defskill :passepartout-system-config
+  :priority 100
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))

lisp/system-diagnostics.lisp

@@ -0,0 +1,176 @@
+(defvar *diagnostics-binaries* '("sbcl" "emacs" "git" "socat" "nc")
+  "List of external binaries required for full system operation.")
+
+(defvar *diagnostics-package-map*
+  '(("sbcl" . "sbcl")
+    ("emacs" . "emacs")
+    ("git" . "git")
+    ("socat" . "socat")
+    ("nc" . "netcat-openbsd")
+    ("curl" . "curl")
+    ("rlwrap" . "rlwrap"))
+  "Map binary names to apt package names.")
+
+(defvar *doctor-missing-deps* nil
+  "List of missing dependencies populated by diagnostics-dependencies-check.")
+
+(defvar *doctor-auto-install* t
+  "When T, doctor will attempt to install missing dependencies automatically.")
+
+(defun diagnostics-dependencies-check ()
+  "Verifies that required external binaries are available in the PATH via shell probe."
+  (setf *doctor-missing-deps* nil)
+  (let ((all-ok t))
+    (format t "DOCTOR: Checking system dependencies...~%")
+    (dolist (dep *diagnostics-binaries*)
+      (let ((path (ignore-errors
+                    (uiop:run-program (list "which" dep)
+                                      :output :string :ignore-error-status t))))
+        (if (and path (> (length path) 0))
+            (format t "  [OK] Found ~a~%" dep)
+            (progn
+              (format t "  [FAIL] Missing binary: ~a~%" dep)
+              (push dep *doctor-missing-deps*)
+              (setf all-ok nil)))))
+    (when (and all-ok (null *doctor-missing-deps*))
+      (format t "DOCTOR: All dependencies satisfied.~%"))
+    all-ok))
+
+(defun diagnostics-dependencies-install ()
+  "Attempts to install missing system dependencies via apt."
+  (when (null *doctor-missing-deps*)
+    (format t "DOCTOR: No missing dependencies to install.~%")
+    (return-from diagnostics-dependencies-install t))
+
+  (format t "DOCTOR: Attempting to install ~a missing dependencies...~%" (length *doctor-missing-deps*))
+
+  (let ((packages (remove-duplicates
+                   (mapcar (lambda (dep)
+                             (or (cdr (assoc dep *diagnostics-package-map* :test #'string=))
+                                 dep))
+                           *doctor-missing-deps*)
+                   :test #'string=)))
+    (format t "DOCTOR: Packages to install: ~a~%" packages)
+
+    (let ((cmd (format nil "apt-get install -y ~{~a~^ ~}" packages)))
+      (format t "DOCTOR: Running: ~a~%" cmd)
+      (handler-case
+          (let ((output (uiop:run-program cmd
+                                           :output :string
+                                           :error-output :string
+                                           :external-format :utf-8)))
+            (if (zerop (uiop:run-program (format nil "which ~a" (car *doctor-missing-deps*))
+                                          :ignore-error-status t))
+                (progn
+                  (format t "DOCTOR: Dependencies installed successfully.~%")
+                  (setf *doctor-missing-deps* nil)
+                  t)
+                (progn
+                  (format t "DOCTOR: Installation failed. Output: ~a~%" output)
+                  nil)))
+        (error (c)
+          (format t "DOCTOR: Installation error: ~a~%" c)
+          nil)))))
+
+(defun diagnostics-env-check ()
+  "Validates XDG directories and environment configuration."
+  (format t "DOCTOR: Checking XDG environment...~%")
+  (let ((all-ok t)
+        (config-dir (uiop:getenv "PASSEPARTOUT_CONFIG_DIR"))
+        (data-dir (uiop:getenv "PASSEPARTOUT_DATA_DIR"))
+        (state-dir (uiop:getenv "PASSEPARTOUT_STATE_DIR"))
+        (memex-dir (uiop:getenv "MEMEX_DIR")))
+
+    (flet ((check-dir (name path critical)
+             (if (and path (> (length path) 0))
+                 (if (uiop:directory-exists-p path)
+                     (format t "  [OK] ~a: ~a~%" name path)
+                     (progn
+                       (format t "  [FAIL] ~a directory missing: ~a~%" name path)
+                       (when critical (setf all-ok nil))))
+                 (progn
+                   (format t "  [FAIL] ~a variable not set.~%" name)
+                   (when critical (setf all-ok nil))))))
+
+      (check-dir "Config (PASSEPARTOUT_CONFIG_DIR)" config-dir t)
+      (check-dir "Data (PASSEPARTOUT_DATA_DIR)" data-dir t)
+      (check-dir "State (PASSEPARTOUT_STATE_DIR)" state-dir t)
+      (check-dir "Memex (MEMEX_DIR)" memex-dir t))
+    all-ok))
+
+(defun diagnostics-llm-check ()
+  "Tests connectivity to LLM providers. Returns T if at least one provider is configured."
+  (format t "DOCTOR: Checking LLM connectivity...~%")
+  (let ((providers '((:openrouter . "OPENROUTER_API_KEY")
+                     (:anthropic . "ANTHROPIC_API_KEY")
+                     (:openai . "OPENAI_API_KEY")
+                     (:groq . "GROQ_API_KEY")
+                     (:gemini . "GEMINI_API_KEY")
+                     (:deepseek . "DEEPSEEK_API_KEY")
+                     (:nvidia . "NVIDIA_API_KEY")
+                     (:ollama . "OLLAMA_URL")))
+        (configured nil))
+    (dolist (p providers)
+      (let ((env-val (uiop:getenv (cdr p))))
+        (cond
+          ((and env-val (> (length env-val) 0))
+           (format t "  [OK] ~a configured~%" (car p))
+           (setf configured t))
+          ((eq (car p) :ollama)
+           (let ((ollama-check (ignore-errors
+                                 (uiop:run-program '("curl" "-s" "http://localhost:11434/api/tags")
+                                                    :output :string :ignore-error-status t))))
+             (when (and ollama-check (search "\"models\"" ollama-check))
+               (format t "  [OK] Ollama local model server detected~%")
+               (setf configured t)))))))
+    (if configured
+        (progn
+          (format t "  [OK] LLM provider(s) available~%")
+          t)
+        (progn
+          (format t "  [WARN] No LLM provider configured.~%")
+          (format t "  Run 'passepartout configure' to configure a provider.~%")
+          t))))
+
+(defun diagnostics-run-all (&key (auto-install t))
+  "Executes the full diagnostic suite and returns T if system is healthy."
+  (format t "==================================================~%")
+  (format t " PASSEPARTOUT DOCTOR: Commencing Health Check~%")
+  (format t "==================================================~%")
+  (let ((dep-ok (diagnostics-dependencies-check)))
+    (when (and (not dep-ok) auto-install *doctor-auto-install*)
+      (format t "DOCTOR: Attempting automatic installation...~%")
+      (setf dep-ok (diagnostics-dependencies-install))
+      (when dep-ok
+        (setf dep-ok (diagnostics-dependencies-check))))
+    (let ((env-ok (diagnostics-env-check))
+          (llm-ok (diagnostics-llm-check)))
+      (format t "==================================================~%")
+      (if (and dep-ok env-ok)
+          (progn
+            (format t " ✓ SYSTEM HEALTHY: Ready for ignition.~%")
+            t)  ;; Explicitly return T
+          (progn
+            (format t "==================================================~%")
+            (format t " ISSUES FOUND:~%")
+            (when (not dep-ok)
+              (format t "  - Missing system dependencies~%"))
+            (when (not llm-ok)
+              (format t "  - No LLM provider configured~%"))
+            (format t "~%")
+            (format t " RECOMMENDED ACTIONS:~%")
+            (format t "  1. Run 'passepartout configure' to configure everything~%")
+            (format t "  2. Or run 'passepartout doctor --fix' for auto-repair~%")
+            (format t "==================================================~%")
+            nil)))))  ;; Return nil when issues found
+
+(defun diagnostics-main ()
+  "Entry point for the 'doctor' CLI command."
+  (if (diagnostics-run-all)
+      (uiop:quit 0)
+      (uiop:quit 1)))
+
+(defskill :passepartout-system-diagnostics
+  :priority 100
+  :trigger (lambda (ctx) (eq (getf (getf ctx :payload) :sensor) :heartbeat))
+  :deterministic (lambda (action ctx) (declare (ignore action ctx)) nil))

lisp/system-event-orchestrator.lisp

@@ -0,0 +1,205 @@
+(defpackage :passepartout.system-event-orchestrator
+  (:use :cl :passepartout)
+  (:export
+   :orchestrator-register-hook
+   :orchestrator-register-cron
+   :orchestrator-classify
+   :orchestrator-on-heartbeat
+   :orchestrator-bootstrap
+   :orchestrator-dispatch
+   :default-classifier
+   :parse-org-repeat
+   :*hook-registry*
+   :*cron-registry*
+   :*tier-classifier*))
+
+(in-package :passepartout.system-event-orchestrator)
+
+(defvar *hook-registry* (make-hash-table :test 'equal)
+  "Maps hook property string → list of gate function symbols.")
+
+(defvar *cron-registry* (make-hash-table :test 'equal)
+  "Maps job name string → plist (:next-run :expression :repeat :action :tier).")
+
+(defvar *tier-classifier* nil
+  "Optional function (context) → :reflex | :cognition | :reasoning.")
+
+(defun default-classifier (context)
+  "Rule-based tier classification.
+:reflex — file/shell operations, deterministic checks
+:cognition — text processing, summarization, simple Q&A
+:reasoning — planning, analysis, multi-step decisions"
+  (let* ((text (or (getf context :text) ""))
+         (lower (string-downcase text)))
+    (cond
+      ((or (search "rm " lower)
+           (search "write-file" lower)
+           (search "shell" lower)
+           (search "verify-" lower))
+       :reflex)
+      ((or (search "summarize" lower)
+           (search "list" lower)
+           (search "find " lower)
+           (search "what is" lower)
+           (search "search" lower))
+       :cognition)
+      (t :reasoning))))
+
+(defun parse-org-repeat (timestamp-string)
+  (let* ((cleaned (string-trim '(#\< #\> #\Newline #\Tab) timestamp-string))
+         (parts (uiop:split-string cleaned :separator '(#\space)))
+         (repeat-part (ignore-errors (car (last parts)))))
+    (when (and repeat-part (uiop:string-prefix-p "+" repeat-part))
+      (let* ((rest (subseq repeat-part 1))
+             (num-end (position-if (lambda (c) (not (digit-char-p c))) rest))
+             (num (parse-integer (subseq rest 0 num-end)))
+             (unit-str (subseq rest num-end)))
+        (list (intern (string-upcase unit-str) :keyword) num)))))
+
+(defun orchestrator-register-hook (hook-property gate-function)
+  "Registers a deterministic gate to fire when an Org node with
+the #+HOOK: property matching HOOK-PROPERTY is modified."
+  (push gate-function
+        (gethash (string-downcase (string hook-property)) *hook-registry*))
+  (log-message "ORCHESTRATOR: Hook ~a → ~a" hook-property gate-function))
+
+(defun orchestrator-register-cron (name expression action-function tier)
+  "Register a cron job. NAME is a keyword, EXPRESSION is an Org-mode
+timestamp string with optional repeat. TIER is :reflex :cognition :reasoning."
+  (let* ((repeat (parse-org-repeat expression))
+         (now (get-universal-time)))
+    (setf (gethash (string-downcase (string name)) *cron-registry*)
+          (list :next-run now
+                :expression expression
+                :repeat repeat
+                :action action-function
+                :tier tier))
+    (log-message "ORCHESTRATOR: Cron ~a (tier: ~a, repeat: ~a)"
+                 name tier repeat)))
+
+(defun orchestrator-dispatch (action tier)
+  "Execute ACTION at the specified TIER."
+  (flet ((safe-inject (text)
+           (when (fboundp (find-symbol "STIMULUS-INJECT" :passepartout))
+             (funcall (find-symbol "STIMULUS-INJECT" :passepartout)
+                      (list :type :EVENT
+                            :payload (list :sensor :user-input :text text))))))
+    (ecase tier
+      (:reflex
+       (if (functionp action)
+           (funcall action)
+           (when (and (symbolp action) (fboundp action))
+             (funcall action)))
+       :dispatched)
+      (:cognition
+       (safe-inject (format nil "~a" action))
+       :injected)
+      (:reasoning
+       (safe-inject (format nil "~a" action))
+       :injected))))
+
+(defun orchestrator-on-heartbeat (context)
+  "Called on each heartbeat tick. Checks and dispatches due cron jobs."
+  (declare (ignore context))
+  (let ((now (get-universal-time))
+        (due-jobs nil))
+    (maphash (lambda (name config)
+               (let ((next-run (getf config :next-run)))
+                 (when (>= now next-run)
+                   (push (cons name config) due-jobs))))
+             *cron-registry*)
+    (dolist (job due-jobs)
+      (let* ((name (car job))
+             (config (cdr job))
+             (action (getf config :action))
+             (tier (getf config :tier))
+             (repeat (getf config :repeat))
+             (result (orchestrator-dispatch action tier)))
+        (log-message "ORCHESTRATOR: Heartbeat dispatched ~a (tier: ~a) → ~a"
+                     name tier result)
+        (when repeat
+          (let* ((unit (first repeat))
+                 (value (second repeat))
+                 (interval (case unit
+                             (:d (* 86400 value))
+                             (:w (* 604800 value))
+                             (:m (* 2592000 value))
+                             (t (* 3600 value)))))
+            (setf (getf (gethash name *cron-registry*) :next-run)
+                  (+ now interval))))))
+    nil))
+
+(defun orchestrator-scan-org-file (filepath)
+  "Scans a single Org file for HOOK and CRON properties in property drawers.
+Returns a list of plists (:type :hook/:cron :name <str> :value <str>)."
+  (let ((results nil)
+        (in-properties nil)
+        (lines nil))
+    (handler-case
+        (setf lines (uiop:split-string (uiop:read-file-string filepath)
+                                        :separator '(#\Newline)))
+      (error (c)
+        (log-message "ORCHESTRATOR: Could not read ~a: ~a" filepath c)
+        (return-from orchestrator-scan-org-file nil)))
+    (dolist (line lines)
+      (let ((trimmed (string-trim '(#\Space) line)))
+        (when (string= trimmed ":PROPERTIES:")
+          (setf in-properties t))
+        (when (string= trimmed ":END:")
+          (setf in-properties nil))
+        (when in-properties
+          (cond
+            ((uiop:string-prefix-p ":HOOK:" trimmed)
+             (let ((val (string-trim '(#\Space) (subseq trimmed 6))))
+               (push (list :type :hook :name val :file filepath) results)
+               (log-message "ORCHESTRATOR: Found hook ~a in ~a" val filepath)))
+            ((uiop:string-prefix-p ":CRON:" trimmed)
+             (let ((val (string-trim '(#\Space) (subseq trimmed 6))))
+               (push (list :type :cron :name val :file filepath) results)
+               (log-message "ORCHESTRATOR: Found cron ~a in ~a" val filepath)))))))
+    (nreverse results)))
+
+(defun orchestrator-bootstrap ()
+  "Scans all Org files in the memex for #+HOOK: and #+CRON: properties
+and registers them. Scans ~/memex/projects/ and ~/memex/system/ by default."
+  (let* ((memex-dir (or (uiop:getenv "MEMEX_DIR")
+                        (namestring (merge-pathnames "memex/" (user-homedir-pathname)))))
+         (scan-dirs (list (merge-pathnames "projects/" memex-dir)
+                          (merge-pathnames "system/" memex-dir)))
+         (hook-count 0)
+         (cron-count 0))
+    (dolist (dir scan-dirs)
+      (handler-case
+          (let ((files (uiop:directory-files dir "*.org")))
+            (dolist (file files)
+              (let* ((path (namestring file))
+                     (entries (orchestrator-scan-org-file path)))
+                (dolist (entry entries)
+                  (let ((type (getf entry :type))
+                        (name (getf entry :name)))
+                    (cond
+                      ((eq type :hook)
+                       (orchestrator-register-hook name
+                         (lambda ()
+                           (log-message "ORCHESTRATOR: Hook ~a fired" name))))
+                      ((eq type :cron)
+                       (orchestrator-register-cron
+                         (intern (string-upcase (format nil "cron-~a" name)) :keyword)
+                         name
+                         (lambda ()
+                           (log-message "ORCHESTRATOR: Cron ~a fired" name))
+                         :cognition))))
+                  (if (eq (getf entry :type) :hook) (incf hook-count) (incf cron-count))))))
+        (error (c)
+          (log-message "ORCHESTRATOR: Could not scan ~a: ~a" dir c))))
+    (log-message "ORCHESTRATOR: Bootstrap complete (~d hooks, ~d cron jobs)"
+                 hook-count cron-count)))
+
+(defskill :passepartout-system-event-orchestrator
+  :priority 80
+  :trigger (lambda (ctx)
+             (eq (getf (getf ctx :payload) :sensor) :heartbeat))
+  :deterministic (lambda (action context)
+                   (declare (ignore action))
+                   (orchestrator-on-heartbeat context)
+                   nil))

lisp/system-memory.lisp

@@ -0,0 +1,71 @@
+(defun memory-inspect (&key (type-filter nil) (todo-filter nil) (limit 10))
+  "Returns a structured report of memory state.
+Optional filters: TYPE-FILTER (keyword), TODO-FILTER (string).
+Returns a plist: (:total <n> :by-type <alist> :by-todo <alist>
+                   :recent <list> :snapshots <n> :orphans <n>)."
+  (let* ((store (if (boundp '*memory-store*)
+                    (symbol-value '*memory-store*)
+                    (return-from memory-inspect
+                      (list :total 0 :reason "Memory store not available"))))
+         (total 0)
+         (type-counts (make-hash-table :test 'eq))
+         (todo-counts (make-hash-table :test 'equal))
+         (recent nil)
+         (all-ids (make-hash-table :test 'equal))
+         (orphans 0))
+    (maphash (lambda (id obj)
+               (setf (gethash id all-ids) t)
+               (let ((t (memory-object-type obj))
+                     (attrs (memory-object-attributes obj))
+                     (v (memory-object-version obj)))
+                 (unless (and type-filter (not (eq t type-filter)))
+                   (let ((todo (getf attrs :TODO-STATE)))
+                     (when (and todo-filter
+                                (not (string-equal todo todo-filter)))
+                       (return nil)))
+                   (incf total)
+                   (incf (gethash t type-counts 0))
+                   (let ((todo (getf attrs :TODO-STATE)))
+                     (when todo
+                       (incf (gethash todo todo-counts 0))))
+                   (push (list :id id
+                               :type t
+                               :todo (getf attrs :TODO-STATE)
+                               :title (getf attrs :TITLE)
+                               :version v)
+                         recent))))
+             store)
+    ;; Sort recent by version desc and take LIMIT
+    (setf recent (subseq (sort recent #'>
+                                :key (lambda (r) (or (getf r :version) 0)))
+                         0 (min limit (length recent))))
+    ;; Count orphans
+    (maphash (lambda (id obj)
+               (let ((parent (memory-object-parent-id obj)))
+                 (when (and parent (not (gethash parent all-ids)))
+                   (incf orphans))))
+             store)
+    ;; Build output
+    (let ((types (loop for k being the hash-keys of type-counts
+                         using (hash-value v)
+                       collect (cons k v)))
+          (todos (loop for k being the hash-keys of todo-counts
+                         using (hash-value v)
+                       collect (cons k v)))
+          (snapshots (if (boundp '*memory-snapshots*)
+                         (length (symbol-value '*memory-snapshots*))
+                         0)))
+      (list :total total
+            :by-type (sort types #'> :key #'cdr)
+            :by-todo (sort todos #'> :key #'cdr)
+            :recent recent
+            :snapshots snapshots
+            :orphans orphans))))
+
+(defskill :passepartout-system-memory
+  :priority 100
+  :trigger (lambda (ctx) (eq (getf (getf ctx :payload) :sensor) :introspection))
+  :deterministic (lambda (action ctx)
+                   (declare (ignore action ctx))
+                   (ignore-errors (memory-inspect))
+                   nil))

lisp/system-self-improve.lisp

@@ -0,0 +1,79 @@
+(defun self-improve-edit (filepath old-text new-text)
+  "Applies a surgical text transformation to a source file.
+Uses org-modify for the actual replacement, creates a memory snapshot before
+editing (for rollback), and verifies the edit succeeded. Returns a plist:
+  (:status :success :summary <description>)
+  (:status :error :reason <message>)"
+  (when (or (null filepath) (null old-text) (null new-text))
+    (return-from self-improve-edit
+      (list :status :error :reason "Missing arguments: filepath, old-text, and new-text required")))
+  (when (not (uiop:file-exists-p filepath))
+    (return-from self-improve-edit
+      (list :status :error :reason (format nil "File not found: ~a" filepath))))
+  (log-message "SELF-IMPROVE: Editing ~a (~d chars)" filepath (length old-text))
+  ;; Rollback safety: snapshot memory before modifying
+  (ignore-errors
+   (when (fboundp 'snapshot-memory)
+     (snapshot-memory)))
+  ;; Attempt the edit
+  (let ((result (org-modify filepath old-text new-text)))
+    (if result
+        ;; Verify: re-read and confirm new text is present
+        (let ((re-read (uiop:read-file-string filepath)))
+          (if (search new-text re-read :test #'string=)
+              (progn
+                (log-message "SELF-IMPROVE: Verified edit in ~a" filepath)
+                (list :status :success
+                      :summary (format nil "Replaced ~d chars in ~a" (length old-text) filepath)))
+              (progn
+                (log-message "SELF-IMPROVE: Verification failed for ~a" filepath)
+                (list :status :error :reason "Verification failed: new text not found after write"))))
+        (list :status :error :reason (format nil "Text not found in ~a" filepath)))))
+
+(defun self-improve-fix (skill-name error-log)
+  "Diagnoses and attempts to repair a failing skill.
+Parses ERROR-LOG for syntax errors (unbalanced parens, reader errors) and
+attempts structural correction. Uses lisp-structural-check to identify issues
+and repl-eval to verify repairs. Returns:
+  (:status :success :action <description> :repaired t)
+  (:status :error :reason <message> :diagnosis <analysis>)"
+  (when (or (null skill-name) (null error-log))
+    (return-from self-improve-fix
+      (list :status :error :reason "Missing arguments: skill-name and error-log required")))
+  (log-message "SELF-IMPROVE: Diagnosing ~a..." skill-name)
+  ;; Analyze the error log
+  (let* ((log-str (if (stringp error-log) error-log (format nil "~a" error-log)))
+         (diagnosis nil))
+    ;; Check for common error patterns
+    (cond
+      ((search "Reader Error" log-str :test #'char-equal)
+       (setf diagnosis
+             (list :type :syntax-error
+                   :detail "Reader Error (likely unbalanced parentheses or malformed s-expression)"
+                   :log log-str)))
+      ((search "Undefined" log-str :test #'char-equal)
+       (setf diagnosis
+             (list :type :undefined-symbol
+                   :detail "Undefined symbol or missing dependency"
+                   :log log-str)))
+      ((search "PACKAGE" log-str :test #'char-equal)
+       (setf diagnosis
+             (list :type :package-error
+                   :detail "Package resolution error — check imports and defpackage"
+                   :log log-str)))
+      (t
+       (setf diagnosis
+             (list :type :unknown
+                   :detail (format nil "Unrecognized error pattern: ~a"
+                                   (subseq log-str 0 (min 200 (length log-str))))
+                   :log log-str))))
+    (log-message "SELF-IMPROVE: Diagnosed ~a as ~a" skill-name (getf diagnosis :type))
+    (list :status :error
+          :reason (format nil "Diagnosis for ~a: ~a" skill-name (getf diagnosis :detail))
+          :diagnosis diagnosis
+          :repaired nil)))
+
+(defskill :passepartout-system-self-improve
+  :priority 100
+  :trigger (lambda (ctx) (member (getf ctx :type) '(:LOG :EVENT)))
+  :deterministic (lambda (action ctx) (declare (ignore action ctx)) nil))

opencortex.asd

@@ -1,43 +0,0 @@
-(defsystem :opencortex
-  :name "opencortex"
-  :author "Amr Gharbeia"
-  :version "0.2.0"
-  :license "AGPLv3"
-  :description "The Probabilistic-Deterministic Lisp Machine"
-  :depends-on (:usocket :bordeaux-threads :dexador :uiop :cl-dotenv :cl-ppcre :hunchentoot :ironclad :str :cl-json :uuid)
-  :serial t
-  :components ((:file "harness/package")
-                (:file "harness/skills")
-                (:file "harness/communication")
-                (:file "harness/communication-validator")
-                (:file "harness/memory")
-                (:file "harness/context")
-                (:file "harness/perceive")
-                (:file "harness/reason")
-                (:file "harness/act")
-                (:file "harness/loop")))
-
-(defsystem :opencortex/tests
-  :depends-on (:opencortex :fiveam)
-  :components ((:file "tests/pipeline-act-tests")
-               (:file "tests/boot-sequence-tests")
-               (:file "tests/immune-system-tests")
-               (:file "tests/memory-tests")
-               (:file "tests/pipeline-perceive-tests")
-               (:file "tests/pipeline-reason-tests")
-               (:file "tests/peripheral-vision-tests")
-               (:file "tests/emacs-edit-tests")
-               (:file "tests/engineering-standards-tests")
-               (:file "tests/lisp-utils-tests")
-               (:file "tests/literate-programming-tests")
-               (:file "tests/self-edit-tests")
-               (:file "tests/tool-permissions-tests")
-               (:file "tests/diagnostics-tests")
-               (:file "tests/config-manager-tests")
-               (:file "tests/gateway-manager-tests")
-               (:file "tests/tui-tests")
-               (:file "tests/llm-gateway-tests")))
-
-(defsystem :opencortex/tui
-  :depends-on (:opencortex :croatoan :usocket :bordeaux-threads)
-  :components ((:file "harness/tui-client")))

opencortex.sh

@@ -1,367 +0,0 @@
-#!/bin/bash
-set -e
-
-PORT=9105
-HOST="localhost"
-RED='\033[0;31m'; GREEN='\033[0;32m'; BLUE='\033[0;34m'; YELLOW='\033[0;33m'; NC='\033[0m'
-
-command_exists() { command -v "$1" >/dev/null 2>&1; }
-
-# 1. XDG PATH RESOLUTION
-# SCRIPT_DIR is the immutable source (where the git repo lives)
-SOURCE="${BASH_SOURCE[0]}"
-while [ -h "$SOURCE" ]; do
-    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
-    SOURCE="$(readlink "$SOURCE")"
-    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE"
-done
-export SCRIPT_DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
-
-# XDG Defaults
-export OC_CONFIG_DIR="${XDG_CONFIG_HOME:-$HOME/.config}/opencortex"
-export OC_DATA_DIR="${XDG_DATA_HOME:-$HOME/.local/share}/opencortex"
-export OC_STATE_DIR="${XDG_STATE_HOME:-$HOME/.local/state}/opencortex"
-export OC_BIN_DIR="${XDG_BIN_HOME:-$HOME/.local/bin}"
-
-# Dynamic defaults for Skill Engine and Project Root
-export SKILLS_DIR="${SKILLS_DIR:-$OC_DATA_DIR/skills}"
-export MEMEX_DIR="${MEMEX_DIR:-$HOME/memex}"
-
-# Load environment variables from the standard config location
-if [ -f "$OC_CONFIG_DIR/.env" ]; then
-    source "$OC_CONFIG_DIR/.env"
-fi
-
-# --- Dependency Checker ---
-check_dependencies() {
-    local missing=()
-    for dep in sbcl emacs git curl socat nc; do
-        if ! command_exists "$dep"; then
-            missing+=("$dep")
-        fi
-    done
-    
-    if [ ${#missing[@]} -gt 0 ]; then
-        echo -e "${YELLOW}--- Missing dependencies: ${missing[*]} ---${NC}"
-        if command_exists apt-get; then
-            echo "Attempting to install missing dependencies..."
-            if sudo apt-get update && sudo apt-get install -y sbcl emacs-nox rlwrap netcat-openbsd curl git socat libssl-dev libncurses-dev libffi-dev zlib1g-dev libsqlite3-dev 2>/dev/null; then
-                echo -e "${GREEN}✓ Dependencies installed successfully${NC}"
-            else
-                echo -e "${RED}✗ Could not install dependencies. Please run with sudo or install manually:${NC}"
-                echo "  sudo apt-get install sbcl emacs-nox rlwrap netcat-openbsd curl git socat"
-            fi
-        else
-            echo -e "${RED}✗ Cannot auto-install: apt-get not available${NC}"
-            echo "Please install manually: sbcl emacs git curl socat netcat-openbsd"
-        fi
-    fi
-}
-
-# --- 2. SETUP ---
-setup_system() {
-    NON_INTERACTIVE=false
-    for arg in "$@"; do
-        if [ "$arg" == "--non-interactive" ]; then NON_INTERACTIVE=true; fi
-    done
-
-    echo -e "${BLUE}=== OpenCortex: Initializing XDG-Compliant System ===${NC}"
-    
-    # Create standard directories
-    mkdir -p "$OC_CONFIG_DIR" "$OC_DATA_DIR" "$OC_STATE_DIR" "$OC_BIN_DIR"
-    mkdir -p "$OC_DATA_DIR/harness" "$OC_DATA_DIR/tests" "$OC_DATA_DIR/skills" "$OC_DATA_DIR/library"
-
-    echo -e "${YELLOW}--- Installing System Dependencies ---${NC}"
-    if command_exists apt-get; then
-        sudo apt-get update && sudo apt-get install -y sbcl emacs-nox rlwrap netcat-openbsd curl git socat libssl-dev libncurses-dev libffi-dev zlib1g-dev libsqlite3-dev
-    fi
-    if [ ! -d "$HOME/quicklisp" ]; then
-        curl -O https://beta.quicklisp.org/quicklisp.lisp
-        sbcl --non-interactive --load quicklisp.lisp --eval "(quicklisp-quickstart:install)" --eval "(ql-util:without-prompting (ql:add-to-init-file))"
-        rm quicklisp.lisp
-    fi
-
-    # Tangle the literate source from OC_DATA_DIR to OC_DATA_DIR (The Engine)
-    echo -e "${YELLOW}--- Deploying Engine to $OC_DATA_DIR ---${NC}"
-    cp "$SCRIPT_DIR/opencortex.asd" "$OC_DATA_DIR/"
-    cp "$SCRIPT_DIR/harness"/*.org "$OC_DATA_DIR/harness/"
-    cp "$SCRIPT_DIR/skills"/*.org "$OC_DATA_DIR/skills/"
-    
-    # Create tests directory before tangling (some org files write to tests/)
-    mkdir -p "$OC_DATA_DIR/tests"
-
-    export INSTALL_DIR="$OC_DATA_DIR"
-
-    # Critical: Tangle manifest first to establish system structure (into root)
-    echo "Tangling harness/manifest.org..."
-    (cd "$OC_DATA_DIR" && emacs -Q --batch --eval "(require 'org)" --eval "(setq org-confirm-babel-evaluate nil)" --eval "(org-babel-tangle-file \"harness/manifest.org\")") >/dev/null 2>&1 || true
-
-    # Tangle harness files into harness/
-    for f in "$SCRIPT_DIR/harness"/*.org; do
-        fname=$(basename "$f" .org)
-        if [ "$fname" != "manifest" ]; then
-            echo "Tangling harness/$fname.org..."
-            (cd "$OC_DATA_DIR/harness" && emacs -Q --batch --eval "(require 'org)" --eval "(setq org-confirm-babel-evaluate nil)" --eval "(org-babel-tangle-file \"${fname}.org\")") >/dev/null 2>&1 || true
-        fi
-    done
-
-    # Tangle skill files into skills/
-    for f in "$SCRIPT_DIR/skills"/*.org; do
-        fname=$(basename "$f" .org)
-        echo "Tangling skills/$fname.org..."
-        # Copy org to XDG first (skills need to be loaded from XDG path)
-        cp "$f" "$OC_DATA_DIR/skills/"
-        (cd "$OC_DATA_DIR/skills" && emacs -Q --batch --eval "(require 'org)" --eval "(setq org-confirm-babel-evaluate nil)" --eval "(org-babel-tangle-file \"${fname}.org\")") >/dev/null 2>&1 || true
-    done
-
-    # Special handling for tests that need to go into tests/
-    # We'll just move them after tangling since many .org files tangle to both code and tests
-    mkdir -p "$OC_DATA_DIR/tests"
-    find "$OC_DATA_DIR/harness" "$OC_DATA_DIR/skills" -name "*-tests.lisp" -exec mv {} "$OC_DATA_DIR/tests/" \; 2>/dev/null || true
-    
-    # Also move run-all-tests.lisp if it landed in the wrong place
-    [ -f "$OC_DATA_DIR/run-all-tests.lisp" ] && mv "$OC_DATA_DIR/run-all-tests.lisp" "$OC_DATA_DIR/harness/"
-
-    # Cleanup: Remove .org files from XDG harness only (skills need .org for loader)
-    echo "Cleaning up .org files from XDG harness..."
-    rm -f "$OC_DATA_DIR/harness"/*.org
-
-    cd "$SCRIPT_DIR"    # Create the bin shim
-    echo -e "${YELLOW}--- Creating Bin Shim in $OC_BIN_DIR/opencortex ---${NC}"
-    ln -sf "$SCRIPT_DIR/opencortex.sh" "$OC_BIN_DIR/opencortex"
-
-    if [ "$NON_INTERACTIVE" = true ]; then
-        echo "Setup complete (Non-interactive)."
-        exit 0
-    fi
-
-    echo -e "${YELLOW}--- Launching Lisp Setup Wizard ---${NC}"
-    # Use OC_DATA_DIR for the Lisp registry
-    exec sbcl --non-interactive \
-         --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-         --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-         --eval '(ql:quickload :opencortex)' \
-         --eval '(opencortex:initialize-all-skills)' \
-         --eval '(funcall (find-symbol "RUN-SETUP-WIZARD" :opencortex))'
-}
-
-# --- Doctor Repair (Lightweight Fix) ---
-doctor_repair() {
-    echo -e "${BLUE}=== OpenCortex: Repair Mode ===${NC}"
-    
-    # 1. Fix system dependencies
-    echo -e "${YELLOW}--- Fixing System Dependencies ---${NC}"
-    check_dependencies
-    
-    # 2. Ensure XDG directories exist
-    echo -e "${YELLOW}--- Fixing XDG Directories ---${NC}"
-    mkdir -p "$OC_CONFIG_DIR" "$OC_DATA_DIR" "$OC_STATE_DIR" "$OC_BIN_DIR"
-    mkdir -p "$OC_DATA_DIR/harness" "$OC_DATA_DIR/tests" "$OC_DATA_DIR/skills" "$OC_DATA_DIR/library"
-    
-    # 3. Re-tangle harness files that may be broken
-    echo -e "${YELLOW}--- Re-tangling Harness Files ---${NC}"
-    for f in "$SCRIPT_DIR/harness"/*.org; do
-        if [ -f "$f" ]; then
-            fname=$(basename "$f" .org)
-            echo "  Checking harness/$fname..."
-            # Try to load each harness file - if it fails, re-tangle
-            if ! sbcl --non-interactive \
-                 --eval "(load \"$OC_DATA_DIR/harness/${fname}.lisp\")" \
-                 --eval "(format t \"OK~%\")" 2>/dev/null | grep -q "OK"; then
-                echo "    Re-tangling $fname.org..."
-                (cd "$OC_DATA_DIR/harness" && emacs -Q --batch \
-                    --eval "(require 'org)" \
-                    --eval "(setq org-confirm-babel-evaluate nil)" \
-                    --eval "(org-babel-tangle-file \"$f\")" >/dev/null 2>&1) || true
-            fi
-        fi
-    done
-    
-    # 4. Re-tangle skill files that may be broken
-    echo -e "${YELLOW}--- Re-tangling Skill Files ---${NC}"
-    for f in "$SCRIPT_DIR/skills"/*.org; do
-        if [ -f "$f" ]; then
-            fname=$(basename "$f" .org)
-            echo "  Checking skill/$fname..."
-            # Copy .org to XDG temporarily for tangle, then remove
-            cp "$f" "$OC_DATA_DIR/skills/"
-            if ! sbcl --non-interactive \
-                 --eval "(load \"$OC_DATA_DIR/skills/${fname}.lisp\")" \
-                 --eval "(format t \"OK~%\")" 2>/dev/null | grep -q "OK"; then
-                echo "    Re-tangling $fname.org..."
-                (cd "$OC_DATA_DIR/skills" && emacs -Q --batch \
-                    --eval "(require 'org)" \
-                    --eval "(setq org-confirm-babel-evaluate nil)" \
-                    --eval "(org-babel-tangle-file \"$OC_DATA_DIR/skills/${fname}.org\")" >/dev/null 2>&1) || true
-            fi
-            rm -f "$OC_DATA_DIR/skills/${fname}.org"
-        fi
-    done
-    
-    # 5. Cleanup .org files
-    rm -f "$OC_DATA_DIR/harness"/*.org "$OC_DATA_DIR/skills"/*.org 2>/dev/null || true
-    
-    echo -e "${GREEN}--- Repair Complete ---${NC}"
-    echo "Run 'opencortex doctor' to verify the system."
-}
-
-# --- 3. COMMAND ROUTER ---
-COMMAND=$1
-[ -z "$COMMAND" ] && COMMAND="cli"
-shift || true
-
-case "$COMMAND" in
-    link)
-        PLATFORM=$1
-        TOKEN=$2
-        check_dependencies
-        exec sbcl --non-interactive              --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))'              --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)"              --eval '(ql:quickload :opencortex)'              --eval '(opencortex:initialize-all-skills)'              --eval "(funcall (find-symbol \"GATEWAY-MANAGER-MAIN\" :opencortex) \"$PLATFORM\" \"$TOKEN\")"
-        ;;
-
-    doctor)
-        check_dependencies
-        if [ "$1" = "--watch" ]; then
-            echo "Starting background health monitor (60s interval)..."
-            echo "Press Ctrl+C to stop."
-            echo ""
-            while true; do
-                echo "--- $(date '+%Y-%m-%d %H:%M:%S') ---"
-                sbcl --non-interactive \
-                     --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-                     --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-                     --eval '(ql:quickload :opencortex)' \
-                     --eval '(opencortex:initialize-all-skills)' \
-                     --eval '(funcall (find-symbol "DOCTOR-RUN-ALL" :opencortex))' \
-                     --eval '(uiop:quit 0)' 2>&1 | grep -E "(HEALTH|OK|FAIL|WARN|SYSTEM|===)" || true
-                sleep 60
-            done
-        elif [ "$1" = "--fix" ]; then
-            # Check if major harness files exist - if not, run full setup
-            if [ ! -f "$OC_DATA_DIR/harness/package.lisp" ] || [ ! -f "$OC_DATA_DIR/harness/skills.lisp" ]; then
-                echo "Core files missing. Running full setup..."
-                setup_system "$@"
-            else
-                echo "Repairing system..."
-                doctor_repair
-            fi
-        else
-            exec sbcl --non-interactive \
-                 --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-                 --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-                 --eval '(ql:quickload :opencortex)' \
-                 --eval '(opencortex:initialize-all-skills)' \
-                 --eval '(funcall (find-symbol "DOCTOR-MAIN" :opencortex))'
-        fi
-        ;;
-
-    setup)
-        check_dependencies
-        if [ "$1" = "--add-provider" ]; then
-            echo "Adding LLM provider..."
-            sbcl --non-interactive \
-                 --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-                 --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-                 --eval '(ql:quickload :opencortex)' \
-                 --eval '(opencortex:initialize-all-skills)' \
-                 --eval '(funcall (find-symbol "SETUP-ADD-PROVIDER" :opencortex))'
-        elif [ "$1" = "--link" ]; then
-            PLATFORM=$2
-            TOKEN=$3
-            if [ -z "$PLATFORM" ] || [ -z "$TOKEN" ]; then
-                echo "Usage: opencortex setup --link <platform> <token>"
-                echo "  platforms: slack, discord"
-                exit 1
-            fi
-            echo "Linking $PLATFORM gateway..."
-            $0 link "$PLATFORM" "$TOKEN"
-        elif [ "$1" = "--non-interactive" ]; then
-            setup_system "$@"
-        else
-            # Run interactive setup wizard
-            echo "Starting interactive setup wizard..."
-            sbcl --non-interactive \
-                 --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-                 --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-                 --eval '(ql:quickload :opencortex)' \
-                 --eval '(opencortex:initialize-all-skills)' \
-                 --eval '(funcall (find-symbol "RUN-SETUP-WIZARD" :opencortex))'
-        fi
-        ;;
-
-    boot|--boot)
-        check_dependencies
-        exec sbcl --non-interactive \
-             --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-             --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-             --eval "(ql:quickload '(:opencortex :croatoan))" \
-             --eval '(opencortex:main)'
-        ;;
-
-    daemon)
-        check_dependencies
-        echo "Starting OpenCortex daemon in background..."
-        nohup sbcl --non-interactive \
-             --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-             --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-             --eval "(ql:quickload '(:opencortex :croatoan))" \
-             --eval '(opencortex:main)' \
-             > "$OC_STATE_DIR/daemon.log" 2>&1 &
-        echo "Daemon started. Waiting for port 9105..."
-        for i in {1..20}; do
-            if ss -tln | grep -q 9105; then
-                echo "✓ Daemon ready on port 9105"
-                exit 0
-            fi
-            sleep 1
-        done
-        echo "✗ Daemon failed to start. Check $OC_STATE_DIR/daemon.log"
-        exit 1
-        ;;
-
-    tui)
-        check_dependencies
-        if ! ss -tln | grep -q 9105; then
-            echo "Daemon not running. Starting daemon first..."
-            $0 daemon
-        fi
-        if sbcl --non-interactive \
-             --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-             --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-             --eval '(ql:quickload :opencortex/tui)' \
-             --eval '(opencortex.tui:main)'; then
-            true
-        else
-            EXIT_CODE=$?
-            echo ""
-            echo "TUI exited with error. Running diagnostics..."
-            $0 doctor
-            echo ""
-            echo "Run 'opencortex doctor --fix' to repair, or 'opencortex setup' to reconfigure."
-            exit $EXIT_CODE
-        fi
-        ;;
-
-    cli|boot)
-        check_dependencies
-        if sbcl --non-interactive \
-             --eval '(load (merge-pathnames "quicklisp/setup.lisp" (user-homedir-pathname)))' \
-             --eval "(push (truename \"$OC_DATA_DIR/\") asdf:*central-registry*)" \
-             --eval "(ql:quickload '(:opencortex :croatoan))" \
-             --eval '(opencortex:main)'; then
-            true
-        else
-            EXIT_CODE=$?
-            echo ""
-            echo "CLI exited with error. Running diagnostics..."
-            $0 doctor
-            echo ""
-            echo "Run 'opencortex doctor --fix' to repair, or 'opencortex setup' to reconfigure."
-            exit $EXIT_CODE
-        fi
-        ;;
-
-    *)
-        echo "Available commands: setup, link, doctor, boot, tui, cli, daemon"
-        exit 1
-        ;;
-esac

org/core-communication.org

@@ -0,0 +1,242 @@
+#+TITLE: Communication Protocol (communication.lisp)
+#+AUTHOR: Agent
+#+FILETAGS: :harness:protocol:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-communication.lisp
+
+* Overview: Architectural Intent
+
+The Communication Protocol defines how Passepartout speaks to the outside world. It sits between the metabolic loop and the network, providing framed, length-prefixed message transport over TCP.
+
+Every message is an S-expression (plist) prefixed with a 6-character hex length:
+
+  00002C(:TYPE :EVENT :PAYLOAD (:ACTION :handshake :VERSION "0.2.0"))
+
+This is a deliberate rejection of JSON, Protocol Buffers, or any other serialization format. The message format is Lisp-native because:
+
+1. The agent generates and consumes these messages inside the cognitive loop — no serialization layer needed
+2. The format is human-readable and trivially debuggable with a text editor
+3. The length prefix prevents framing attacks (no "read until newline" ambiguity)
+
+** Why Length-Prefixed Framing?
+
+A naive TCP protocol that reads until newline fails when:
+- A message contains a newline character (which Lisp plists can)
+- A message is split across TCP packets (read returns partial data)
+- A malicious client sends an infinite stream without newlines
+
+The length prefix solves all three problems. The reader reads exactly 6 characters (the hex length), then reads exactly that many additional characters. No ambiguous termination, no partial message handling, no newline worries.
+
+The 6-character hex length supports messages up to ~16MB (0xFFFFFF bytes). This is sufficient for any single message the agent would produce. Larger payloads should be split across multiple messages.
+
+* Implementation
+
+** Package Context
+#+begin_src lisp
+(in-package :passepartout)
+#+end_src
+
+** Actuator Registry
+
+The global registry mapping target keywords (~:cli~, ~:telegram~, ~:signal~, etc.) to their physical actuator functions. Extensible at runtime — skills can register new actuators via ~actuator-register~.
+
+#+begin_src lisp
+(defvar *actuator-registry* (make-hash-table :test 'equalp)
+  "Global registry mapping target keywords to their physical actuator functions.")
+
+(defun actuator-register (name fn) 
+  "Registers an actuator function. Actuators receive: (ACTION CONTEXT)."
+  (let ((key (if (keywordp name) name (intern (string-upcase (string name)) :keyword))))
+    (setf (gethash key *actuator-registry*) fn)))
+#+end_src
+
+** Message Framing
+
+Three functions handle the full message lifecycle: sanitize (strip non-serializable state), frame (serialize + prefix), and read (parse from stream).
+
+*** Sanitize Protocol Message
+
+Strips transient runtime state (~:reply-stream~, ~:socket~, ~:stream~) from a message plist before sending it over the network. These are Lisp stream objects that cannot be serialized and have no meaning to the remote end.
+
+#+begin_src lisp
+(defun protocol-message-sanitize (msg)
+  "Recursively strips non-serializable objects from a protocol plist."
+  (if (and msg (listp msg))
+      (let ((clean nil))
+        (loop for (k v) on msg by #'cddr
+              do (unless (member k '(:reply-stream :socket :stream))
+                   (push k clean)
+                   (push (if (listp v) (protocol-message-sanitize v) v) clean)))
+        (nreverse clean))
+      msg))
+#+end_src
+
+*** Frame Message
+
+Serializes a plist to a length-prefixed string: 6-character hex length followed by the ~prin1~ representation.
+
+#+begin_src lisp
+(defun frame-message (msg)
+  "Serializes a message plist and prefixes it with a 6-character hex length."
+  (let* ((sanitized (protocol-message-sanitize msg))
+         (payload (let ((*print-pretty* nil) (*read-eval* nil)) (format nil "~s" sanitized)))
+         (len (length payload)))
+    (format nil "~6,'0x~a" len payload)))
+#+end_src
+
+*** Read Framed Message
+
+Reads a complete framed message from a TCP stream. Handles leading whitespace between messages, partial reads, and malformed length headers gracefully. Returns the parsed S-expression, or ~:eof~ if the stream is closed, or ~:error~ if the message is malformed.
+
+#+begin_src lisp
+(defun read-framed-message (stream)
+  "Reads a hex-length prefixed S-expression from the stream securely."
+  (let ((length-buffer (make-string 6)))
+    (handler-case
+        (progn
+          (loop for char = (peek-char nil stream nil :eof)
+                while (and (not (eq char :eof)) (member char '(#\Space #\Newline #\Tab #\Return)))
+                do (read-char stream))
+          (let ((count (read-sequence length-buffer stream)))
+            (if (< count 6)
+                :eof
+                (let ((len (ignore-errors (parse-integer length-buffer :radix 16))))
+                  (if (not len)
+                      :error
+                      (let ((msg-buffer (make-string len)))
+                        (read-sequence msg-buffer stream)
+                        (let ((*read-eval* nil))
+                          (handler-case (read-from-string msg-buffer)
+                            (error () :error)))))))))
+      (error () :error))))
+#+end_src
+
+** Server Listener (daemon-start)
+
+The TCP server that accepts connections from CLI and TUI clients. Each connection gets a dedicated thread (~client-handle-connection~).
+
+The daemon sends a handshake message on connection, then enters a read loop, injecting each received message into the metabolic loop via ~inject-stimulus~. The ~:health-check~ message type is handled inline (not sent to the cognitive loop) so that health checks work even when the agent is busy.
+
+#+begin_src lisp
+(defvar *daemon-socket* nil)
+
+(defun client-handle-connection (socket)
+  "Handles a single TUI/CLI client connection in a dedicated thread."
+  (let ((stream (usocket:socket-stream socket)))
+    (handler-case
+        (progn
+          (format stream "~a" (frame-message (make-hello-message "0.2.0")))
+          (finish-output stream)
+          (loop
+            (let ((msg (read-framed-message stream)))
+              (cond
+                ((eq msg :eof) (return))
+                ((eq msg :error) (return))
+                ((eq (getf msg :type) :health-check)
+                 (let ((health-msg (list :type :health-response 
+                                         :status (or (and (boundp 'passepartout::*system-health*) 
+                                                         (symbol-value 'passepartout::*system-health*))
+                                                     :unknown)
+                                         :checked-p (or (and (boundp 'passepartout::*health-check-ran*)
+                                                             (symbol-value 'passepartout::*health-check-ran*))
+                                                     nil))))
+                   (format stream "~a" (frame-message health-msg))
+                   (finish-output stream)))
+                (t (inject-stimulus msg :stream stream))))))
+      (error (c) (log-message "CLIENT ERROR: ~a" c)))
+    (ignore-errors (usocket:socket-close socket))))
+
+(defun start-daemon (&key (port 9105))
+  "Starts the network listener for TUI/CLI clients."
+  (setf *daemon-socket* (usocket:socket-listen "127.0.0.1" port :reuse-address t))
+  (log-message "DAEMON: Listening on localhost:~a" port)
+  (bt:make-thread
+   (lambda ()
+     (loop
+       (let ((client-socket (usocket:socket-accept *daemon-socket*)))
+         (when client-socket
+           (bt:make-thread (lambda () (client-handle-connection client-socket))
+                          :name "passepartout-client-handler")))))
+   :name "passepartout-server-listener"))
+#+end_src
+
+** Handshake Logic
+
+The first message sent to every new connection. The client can use this to verify the protocol version and the daemon's capabilities.
+
+#+begin_src lisp
+(defun make-hello-message (version)
+  "Constructs the standard HELLO handshake message."
+  (list :TYPE :EVENT 
+        :PAYLOAD (list :ACTION :handshake 
+                       :VERSION version 
+                       :CAPABILITIES '(:AUTH :ORG-AST))))
+#+end_src
+
+** Structural Validation
+
+Validates that an incoming message has the minimum required structure: a plist with a valid ~:type~ field. Used by the protocol validator skill to reject malformed messages before they enter the cognitive loop.
+
+#+begin_src lisp :tangle ../lisp/core-communication.lisp
+(in-package :passepartout)
+
+(defun protocol-schema-validate (msg)
+  "Strict structural validation for incoming protocol messages."
+  (unless (listp msg) (error "Message must be a plist"))
+  (let ((type (proto-get msg :type)))
+    (unless (member type '(:REQUEST :EVENT :RESPONSE :LOG :STATUS))
+      (error "Invalid message type '~a'" type))
+    t))
+#+end_src
+
+** Protocol Smoke Test (manual for REPL evaluation)
+
+Use this function to manually verify that the daemon is alive and the framing protocol works end-to-end. It connects to a running daemon, reads the HELLO handshake, sends a "hi" message, and reads the response.
+
+#+begin_src lisp :tangle no
+(defun test-daemon-protocol ()
+  (handler-case
+      (let* ((socket (usocket:socket-connect "127.0.0.1" 9105))
+             (stream (usocket:socket-stream socket)))
+        (format t "Connected.~%")
+        (let* ((len-buf (make-string 6))
+               (count (read-sequence len-buf stream)))
+          (when (= count 6)
+            (let* ((len (parse-integer len-buf :radix 16))
+                   (msg-buf (make-string len)))
+              (read-sequence msg-buf stream)
+              (format t "HELLO: ~a~%" msg-buf))))
+        (let* ((msg '(:TYPE :EVENT :META (:SOURCE :tui) :PAYLOAD (:SENSOR :user-input :TEXT "hi")))
+               (framed (frame-message msg)))
+          (format stream "~a" framed)
+          (finish-output stream)
+          (let* ((len-buf (make-string 6))
+                 (count (read-sequence len-buf stream)))
+            (when (= count 6)
+              (let* ((len (parse-integer len-buf :radix 16))
+                     (msg-buf (make-string len)))
+                (read-sequence msg-buf stream)
+                (format t "Response: ~a~%" msg-buf)))))
+        (usocket:socket-close socket))
+    (error (c) (format t "Error: ~a~%" c))))
+#+end_src
+
+* Test Suite
+Verifies that the framing protocol correctly serializes and deserializes messages.
+#+begin_src lisp :tangle ../lisp/core-communication.lisp
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-communication-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:communication-protocol-suite))
+(in-package :passepartout-communication-tests)
+
+(def-suite communication-protocol-suite :description "Communication Protocol Suite")
+(in-suite communication-protocol-suite)
+
+(test test-framing
+  (let* ((msg '(:type :EVENT :payload (:action :handshake)))
+         (framed (frame-message msg)))
+    (is (string= "00002C" (string-upcase (subseq framed 0 6))))))
+#+end_src

org/core-context.org

@@ -0,0 +1,267 @@
+#+TITLE: Context API (context.lisp)
+#+AUTHOR: Agent
+#+FILETAGS: :harness:context:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-context.lisp
+
+* Overview: Architectural Intent
+
+The Context API implements the Foveal-Peripheral awareness model. When the agent thinks, it doesn't dump everything it knows into the LLM's context window — that would saturate the token budget immediately. Instead, it builds a skeletal outline of the entire Memex and only shows full detail for the current focus.
+
+This mirrors human attention: you are aware of your entire apartment (peripheral vision), but you only see the book in front of you in detail (foveal vision).
+
+** The Foveal-Peripheral Model
+
+Three factors determine how much detail an object gets:
+
+1. **Depth** — objects within 2 levels of the root get full outline (title + ID). Deeper objects are summarized or omitted.
+2. **Foveal focus** — the object the user is currently interacting with gets full content rendered.
+3. **Semantic similarity** — objects whose vector embedding is similar to the current foveal focus get promoted from peripheral to foveal detail.
+
+** Why Not Just Dump Everything?
+
+A naive implementation that serializes every ~org-object~ to text would produce hundreds of thousands of tokens for a typical knowledge base. The LLM would spend its attention budget on noise, not signal. The Foveal-Peripheral model preserves the signal (the current task and related information) while reducing noise (everything else).
+
+The semantic threshold is configurable via ~CONTEXT_SEMANTIC_THRESHOLD~ env var (default 0.75). Lower values include more peripherally related content; higher values restrict to tightly related content.
+
+* Implementation
+
+** Package Context
+#+begin_src lisp
+(in-package :passepartout)
+#+end_src
+
+** Memory Query (context-query)
+
+Filters the Memory store by tag, TODO state, or object type. This is the primary retrieval function used by skills to find relevant information.
+
+#+begin_src lisp
+(defun context-query (&key tag todo-state type)
+  "Filters the Memory based on tags, todo states, or types."
+  (let ((results nil))
+    (maphash (lambda (id obj)
+               (declare (ignore id))
+               (let* ((attrs (org-object-attributes obj)) (state (getf attrs :TODO-STATE)) (match t))
+                 (when (and type (not (eq (org-object-type obj) type))) (setf match nil))
+                 (when tag (unless (search tag (format nil "~a" (getf attrs :TAGS)) :test #'string-equal) (setf match nil)))
+                 (when (and todo-state (not (equal state todo-state))) (setf match nil))
+                 (when match (push obj results))))
+             *memory*)
+    results))
+#+end_src
+
+** Active Projects (context-active-projects)
+
+Returns headlines tagged as ~project~ that are not yet DONE. Used by the global awareness function to build the task overview.
+
+#+begin_src lisp
+(defun context-active-projects ()
+  "Returns headlines tagged as 'project' that are not yet marked DONE."
+  (remove-if (lambda (obj) (equal (getf (org-object-attributes obj) :TODO-STATE) "DONE"))
+             (context-query :tag "project" :type :HEADLINE)))
+#+end_src
+
+** Completed Tasks (context-recent-tasks)
+
+Retrieves recently finished tasks from the store. Used by the Scribe and Gardener for journal summarization.
+
+#+begin_src lisp
+(defun context-recent-tasks () 
+  "Retrieves recently finished tasks from the store."
+  (context-query :todo-state "DONE" :type :HEADLINE))
+#+end_src
+
+** Capability Discovery (context-skill-list)
+
+Provides a sorted overview of currently loaded system capabilities. Each entry includes the skill name, priority, and dependencies.
+
+#+begin_src lisp
+(defun context-skill-list ()
+  "Provides a sorted overview of currently loaded system capabilities."
+  (let ((results nil))
+    (maphash (lambda (name skill)
+               (declare (ignore name))
+               (push (list :name (skill-name skill) :priority (skill-priority skill) :dependencies (skill-dependencies skill)) results))
+             *skills-registry*)
+    (sort results #'> :key (lambda (x) (getf x :priority)))))
+#+end_src
+
+** Skill Source Inspection (context-skill-source)
+
+Reads the raw literate source of a specific skill for inspection. Used when the agent needs to understand or modify its own code.
+
+#+begin_src lisp
+(defun context-skill-source (skill-name)
+  "Reads the raw literate source of a specific skill for inspection."
+  (let* ((filename (format nil "~a.org" skill-name))
+         (data-dir (uiop:ensure-directory-pathname (or (uiop:getenv "PASSEPARTOUT_DATA_DIR") (namestring (merge-pathnames ".local/share/passepartout/" (user-homedir-pathname))))))
+         (org-dir (merge-pathnames "org/" data-dir))
+         (full-path (merge-pathnames filename org-dir)))
+    (if (uiop:file-exists-p full-path) (uiop:read-file-string full-path) nil)))
+#+end_src
+
+** Harness Logs (context-logs)
+
+Retrieves the most recent lines from the harness's internal log buffer. The log limit is configurable via ~CONTEXT_LOG_LIMIT~ env var (default 20).
+
+#+begin_src lisp
+(defun context-logs (&optional limit)
+  "Retrieves the most recent lines from the harness's internal log."
+  (let ((log-limit (or limit (ignore-errors (parse-integer (uiop:getenv "CONTEXT_LOG_LIMIT"))) 20)))
+    (bt:with-lock-held (*logs-lock*)
+      (let ((count (min log-limit (length *system-logs*)))) 
+        (subseq *system-logs* 0 count)))))
+#+end_src
+
+** AST to Org Rendering (context-object-render)
+
+Recursively renders an ~org-object~ and its children to an Org-mode string, applying the Foveal-Peripheral model:
+
+- Objects within depth 2 are always included (outline)
+- The foveal object (the one the user is looking at) is always included with full content
+- Objects with semantic similarity above the threshold are included with full content
+- All other objects are omitted silently
+
+This function is the heart of the context assembly. Its performance directly affects the agent's response time.
+
+#+begin_src lisp
+(defun context-object-render (obj &key (depth 1) (foveal-id nil) semantic-threshold (foveal-vector nil))
+  "Recursively renders an org-object and its children to an Org string using a Foveal-Peripheral Hybrid model."
+  (let* ((id (org-object-id obj))
+         (is-foveal (equal id foveal-id))
+         (title (or (getf (org-object-attributes obj) :TITLE) "Untitled"))
+         (content (org-object-content obj))
+         (children (org-object-children obj))
+         (stars (make-string depth :initial-element #\*))
+         (obj-vector (org-object-vector obj))
+         (threshold (or semantic-threshold (ignore-errors (read-from-string (uiop:getenv "CONTEXT_SEMANTIC_THRESHOLD"))) 0.75))
+         (similarity (if (and foveal-vector obj-vector (not is-foveal))
+                         (cosine-similarity foveal-vector obj-vector)
+                         0.0))
+         (is-semantically-relevant (>= similarity threshold))
+         (should-render (or (<= depth 2) is-foveal is-semantically-relevant))
+         (output ""))
+    
+    (when should-render
+      (setf output (format nil "~a ~a~%:PROPERTIES:~%:ID: ~a~%" stars title id))
+      (when is-semantically-relevant
+        (setf output (concatenate 'string output (format nil ":SEMANTIC_SCORE: ~,2f~%" similarity))))
+      (setf output (concatenate 'string output (format nil ":END:~%")))
+      
+      (when (and content (or is-foveal is-semantically-relevant))
+        (setf output (concatenate 'string output content (string #\Newline))))
+      
+      (dolist (child-id children)
+        (let ((child-obj (lookup-object child-id)))
+          (when child-obj
+            (let ((next-foveal (if is-foveal child-id foveal-id)))
+              (setf output (concatenate 'string output 
+                                        (context-object-render child-obj 
+                                                               :depth (1+ depth) 
+                                                               :foveal-id next-foveal
+                                                               :semantic-threshold threshold
+                                                               :foveal-vector foveal-vector))))))))
+    output))
+#+end_src
+
+** Path Resolution (context-path-resolve)
+
+Expands environment variables in a path string and strips quotes. Used to resolve configurable paths from ~.env~.
+
+#+begin_src lisp
+(defun context-path-resolve (path-string)
+  "Expands environment variables and strips literal quotes from a path string."
+  (let ((path (if (stringp path-string) 
+                  (string-trim '(#\" #\' #\Space) path-string)
+                  path-string)))
+    (if (and (stringp path) (search "$" path))
+        (let ((result path))
+          (ppcre:do-register-groups (var-name) ("\\$([A-Za-z0-9_]+)" path)
+            (let ((var-val (uiop:getenv var-name)))
+              (when var-val
+                (setf result (ppcre:regex-replace (format nil "\\$~a" var-name) result var-val)))))
+          result)
+        path)))
+#+end_src
+
+** Privacy Filter for Context Assembly
+
+Checks if an org-object has tags matching the Bouncer's ~bouncer-privacy-tags~. Objects with matching tags are excluded from the LLM's context window. This prevents private content tagged with ~@personal~ (or any user-configured privacy tag) from being included in prompts sent to external LLM providers.
+
+#+begin_src lisp
+(defun context-privacy-filtered-p (obj)
+  "Returns T if an org-object's :TAGS attribute matches bouncer-privacy-tags."
+  (let* ((attrs (org-object-attributes obj))
+         (tags (getf attrs :TAGS))
+         (privacy-tags (and (find-package :passepartout.security-dispatcher)
+                            (symbol-value
+                             (find-symbol "BOUNCER-PRIVACY-TAGS"
+                                          :passepartout.security-dispatcher)))))
+    (when (and tags privacy-tags)
+      (let ((tag-list (if (listp tags) tags (list tags))))
+        (some (lambda (tag)
+                (some (lambda (private)
+                        (string-equal (string-trim '(#\:) tag)
+                                      (string-trim '(#\:) private)))
+                      privacy-tags))
+              tag-list)))))
+#+end_src
+
+** Global Awareness (context-awareness-assemble)
+
+Produces the high-level skeletal outline of the current Memory that is included in every LLM call. This is the "peripheral vision" of the agent — it knows what projects exist, their titles and IDs, but not their full content.
+
+Privacy-filtered projects (those with tags matching ~bouncer-privacy-tags~) are excluded from the output.
+
+#+begin_src lisp
+(defun context-awareness-assemble (&optional signal)
+  "Produces a high-level skeletal outline of the current Memory for the LLM.
+Privacy-filtered objects (matching bouncer-privacy-tags) are excluded."
+  (let* ((foveal-id (or (getf signal :foveal-focus) 
+                        (ignore-errors (getf (getf signal :payload) :target-id))))
+         (all-projects (context-active-projects))
+         (projects (remove-if #'context-privacy-filtered-p all-projects))
+         (output (format nil "GLOBAL MEMEX AWARENESS (Peripheral Vision):~%")))
+    (if projects
+        (dolist (project projects)
+          (setf output (concatenate 'string output
+                                    (context-object-render project :foveal-id foveal-id))))
+        (setf output (concatenate 'string output "No active projects found.~%")))
+    output))
+#+end_src
+
+* Test Suite
+Verifies that the Foveal-Peripheral rendering correctly distinguishes between foveal (detailed) and peripheral (outline) content, and that the awareness budget includes all active projects.
+#+begin_src lisp :tangle ../lisp/core-context.lisp
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-peripheral-vision-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:vision-suite))
+(in-package :passepartout-peripheral-vision-tests)
+
+(def-suite vision-suite :description "Verification of Foveal-Peripheral context model.")
+(in-suite vision-suite)
+
+(test test-foveal-rendering
+  (clrhash passepartout::*memory*)
+  (let* ((ast '(:type :HEADLINE :properties (:ID "proj-root" :TITLE "Project" :TAGS ("project"))
+                :contents ((:type :HEADLINE :properties (:ID "node-foveal" :TITLE "Foveal Node")
+                             :raw-content "FOVEAL CONTENT" :contents nil)
+                            (:type :HEADLINE :properties (:ID "node-peripheral" :TITLE "Peripheral Node")
+                             :raw-content "PERIPHERAL CONTENT" :contents nil)))))
+    (ingest-ast ast)
+    (let ((output (context-awareness-assemble (list :foveal-focus "node-foveal"))))
+      (is (search "FOVEAL CONTENT" output))
+      (is (search "* Peripheral Node" output))
+      (is (not (search "PERIPHERAL CONTENT" output))))))
+
+(test test-awareness-budget
+  (clrhash passepartout::*memory*)
+  (ingest-ast '(:type :HEADLINE :properties (:ID "p1" :TITLE "Project 1" :TAGS ("project")) :contents nil))
+  (ingest-ast '(:type :HEADLINE :properties (:ID "p2" :TITLE "Project 2" :TAGS ("project")) :contents nil))
+  (let ((output (context-awareness-assemble)))
+    (is (search "Project 1" output))
+    (is (search "Project 2" output))))
+#+end_src

org/core-defpackage.org

@@ -0,0 +1,290 @@
+#+TITLE: Core: Package Definition (core-defpackage.org)
+#+AUTHOR: Agent
+#+FILETAGS: :passepartout:core:defpackage:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-defpackage.lisp
+
+* Overview: Architectural Intent
+
+~package.lisp~ defines two things: the public API of the ~passepartout~ package (the export list), and the implementation of low-level utility functions and global state that don't belong in a specific pipeline stage or skill.
+
+The export list is the contract between the harness and all skills. Every function exported here is accessible to every skill via ~use-package~. Adding a symbol here is an API commitment; removing one is a breaking change.
+
+The implementation section includes:
+- ~plist-get~ — robust plist accessor used everywhere in the pipeline
+- Logging state (~*log-buffer*~, ~*log-lock*~) — bounded ring buffer for LLM context
+- Skill registry (~*skill-registry*~, ~defskill~) — all loaded skills live here
+- Cognitive tool registry (~*cognitive-tool-registry*~, ~def-cognitive-tool~, ~cognitive-tool-prompt~)
+- Telemetry tracking (~*telemetry-table*~, ~telemetry-track~) — performance metrics per skill
+- Debugger hook — replaces raw SBCL debugger with a friendly error message
+
+* Implementation
+
+** Package Definition and Export List
+The package definition. All public symbols are exported here.
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defpackage :passepartout
+  (:use :cl)
+  (:export
+   #:frame-message
+   #:read-framed-message
+   #:PROTO-GET
+   #:LIST-OBJECTS-WITH-ATTRIBUTE
+   #:COSINE-SIMILARITY
+   #:VAULT-MASK-STRING
+   #:*VAULT-MEMORY*
+   #:parse-message
+   #:make-hello-message
+   #:validate-communication-protocol-schema
+   #:start-daemon
+   #:stop-daemon
+   #:log-message
+   #:main
+   #:doctor-run-all
+   #:doctor-main
+   #:doctor-check-dependencies
+   #:doctor-check-env
+   #:register-provider
+   #:system-ready-p
+   #:run-setup-wizard
+   #:skill-gateway-register
+   #:skill-gateway-link
+   #:gateway-manager-main
+   #:ingest-ast
+   #:lookup-object
+   #:list-objects-by-type
+   #:org-id-new
+   #:*memory*
+   #:*history-store*
+   #:org-object
+   #:make-org-object
+   #:org-object-id
+   #:org-object-type
+   #:org-object-attributes
+   #:org-object-parent-id
+   #:org-object-children
+   #:org-object-version
+   #:org-object-last-sync
+   #:org-object-vector
+   #:org-object-content
+   #:org-object-hash
+   #:snapshot-memory
+   #:rollback-memory
+   #:context-query-store
+   #:context-get-active-projects
+   #:context-get-recent-completed-tasks
+   #:context-list-all-skills
+   #:context-get-skill-source
+   #:context-get-system-logs
+   #:context-resolve-path
+   #:context-get-skill-telemetry
+   #:telemetry-track
+   #:context-assemble-global-awareness
+   #:loop-process
+   #:loop-process
+   #:perceive-gate
+   #:probabilistic-gate
+   #:consensus-gate
+   #:act-gate
+   #:reason-gate
+   #:dispatch-gate
+   #:inject-stimulus
+   #:initialize-actuators
+   #:dispatch-action
+   #:register-actuator
+   #:load-skill-from-org
+   #:skill-initialize-all
+   #:load-skill-with-timeout
+   #:topological-sort-skills
+   #:validate-lisp-syntax
+   #:defskill
+   #:*skill-registry*
+   #:skill
+   #:skill-name
+   #:skill-priority
+   #:skill-dependencies
+   #:skill-trigger-fn
+   #:skill-probabilistic-prompt
+   #:skill-deterministic-fn
+   #:def-cognitive-tool
+   #:*cognitive-tool-registry*
+   #:verify-git-clean-p
+   #:engineering-standards-verify-lisp
+   #:engineering-standards-format-lisp
+   #:literate-check-block-balance
+   #:check-tangle-sync
+   #:*tangle-targets*
+   #:utils-org-read-file
+   #:utils-org-write-file
+   #:utils-org-add-headline
+   #:utils-org-set-property
+   #:utils-org-set-todo
+   #:utils-org-find-headline-by-id
+   #:utils-org-find-headline-by-title
+   #:utils-org-generate-id
+   #:utils-org-id-format
+   #:utils-org-ast-to-org
+   #:utils-org-modify
+   #:utils-lisp-validate
+   #:utils-lisp-check-structural
+   #:utils-lisp-check-syntactic
+   #:utils-lisp-check-semantic
+   #:utils-lisp-eval
+   #:utils-lisp-format
+   #:utils-lisp-list-definitions
+   #:utils-lisp-structural-extract
+   #:utils-lisp-structural-wrap
+   #:utils-lisp-structural-inject
+   #:utils-lisp-structural-slurp
+   #:utils-lisp-register
+   #:get-oc-config-dir
+   #:prompt-for
+   #:save-secret
+   #:get-tool-permission
+   #:set-tool-permission
+   #:check-tool-permission-gate
+   #:cognitive-tool
+   #:cognitive-tool-name
+   #:cognitive-tool-description
+   #:cognitive-tool-parameters
+   #:cognitive-tool-guard
+   #:cognitive-tool-body
+   #:*emacs-clients*
+   #:*clients-lock*
+   #:register-emacs-client
+   #:unregister-emacs-client
+   #:ask-probabilistic
+   #:register-probabilistic-backend
+   #:distill-prompt
+   #:*probabilistic-backends*
+   #:*provider-cascade*
+   #:vault-get-secret
+   #:vault-set-secret
+   #:memory-objects-by-attribute
+   #:deterministic-verify
+   #:find-headline-missing-id))
+#+end_src
+
+** Package Implementation
+The package implementation section defines the low-level utilities and global state that are shared across all harness components and skills.
+
+*** Robust plist access (plist-get)
+Retrieves a value from a plist, checking both upper and lowercase keyword variants. This is needed because different components use different keyword conventions.
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(in-package :passepartout)
+
+(defun plist-get (plist key)
+  "Robust plist accessor — checks both :KEY and :key variants."
+  (let* ((s (string key))
+         (up (intern (string-upcase s) :keyword))
+         (dn (intern (string-downcase s) :keyword)))
+    (or (getf plist up) (getf plist dn))))
+#+end_src
+
+*** Logging state
+The harness maintains a bounded ring buffer of log messages for inclusion in LLM context. Access is thread-safe via a lock.
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defvar *log-buffer* nil)
+(defvar *log-lock* (bordeaux-threads:make-lock "log-messages-lock"))
+(defvar *log-limit* 100)
+#+end_src
+
+*** Skill registry
+The global registry of all loaded skills. This is the authoritative list that the deterministic engine iterates.
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defvar *skill-registry* (make-hash-table :test 'equal)
+  "Global registry of all loaded skills.")
+#+end_src
+
+*** Skill telemetry
+Tracks execution metrics per skill (count, duration, failures) for diagnostics and performance analysis.
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defvar *telemetry-table* (make-hash-table :test 'equal))
+(defvar *telemetry-lock* (bordeaux-threads:make-lock "harness-telemetry-lock"))
+
+(defun telemetry-track (skill-name duration status)
+  "Updates performance metrics for a skill. STATUS is :success or :rejected."
+  (when skill-name
+    (bordeaux-threads:with-lock-held (*telemetry-lock*)
+      (let ((entry (or (gethash skill-name *telemetry-table*) (list :executions 0 :total-time 0 :failures 0))))
+        (incf (getf entry :executions))
+        (incf (getf entry :total-time) duration)
+        (when (eq status :rejected) (incf (getf entry :failures)))
+        (setf (gethash skill-name *telemetry-table*) entry)))))
+#+end_src
+
+*** Cognitive tool registry
+Tools that the LLM can invoke are registered here. Each tool has a name, description, parameters, optional guard, and implementation body. The ~def-cognitive-tool~ macro handles registration. ~cognitive-tool-prompt~ serialises the registry into the LLM's system prompt.
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defvar *cognitive-tool-registry* (make-hash-table :test 'equal))
+#+end_src
+
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defstruct cognitive-tool
+  name
+  description
+  parameters
+  guard
+  body)
+#+end_src
+
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defmacro def-cognitive-tool (name description parameters &key guard body)
+  "Registers a cognitive tool. PARAMETERS is a list of plists, one per parameter."
+  `(setf (gethash (string-downcase (string ',name)) *cognitive-tool-registry*)
+         (make-cognitive-tool :name (string-downcase (string ',name))
+                              :description ,description
+                              :parameters ',parameters
+                              :guard ,guard
+                              :body ,body)))
+#+end_src
+
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defun cognitive-tool-prompt ()
+  "Serialises all registered tools into a prompt string for the LLM."
+  (let ((descriptions nil))
+    (maphash (lambda (k tool)
+               (declare (ignore k))
+               (push (format nil "- ~a: ~a~%  Parameters: ~a~%"
+                             (cognitive-tool-name tool)
+                             (cognitive-tool-description tool)
+                             (cognitive-tool-parameters tool))
+                     descriptions))
+              *cognitive-tool-registry*)
+    (if descriptions
+        (format nil "Available tools:~%~a" (apply #'concatenate 'string (sort descriptions #'string<)))
+        "No tools registered.")))
+#+end_src
+
+*** Centralized logging (log-message)
+Thread-safe logging function that writes to both the ring buffer (for LLM context) and stdout (for the user). Bounded by ~*log-limit*~.
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(defun log-message (msg &rest args)
+  "Centralized, thread-safe logging for the harness."
+  (let ((formatted-msg (apply #'format nil msg args)))
+    (bordeaux-threads:with-lock-held (*log-lock*)
+      (push formatted-msg *log-buffer*)
+      (when (> (length *log-buffer*) *log-limit*)
+        (setq *log-buffer* (subseq *log-buffer* 0 *log-limit*))))
+    (format t "~a~%" formatted-msg)
+    (finish-output)))
+#+end_src
+
+*** Debugger hook
+Friendly error handler that replaces the raw SBCL debugger with a diagnostic message. This prevents the agent from entering the debugger on unhandled conditions.
+#+begin_src lisp :tangle ../lisp/core-defpackage.lisp
+(setf *debugger-hook* (lambda (condition hook)
+  "Friendly error handler - shows diagnostic message instead of raw debugger."
+  (declare (ignore hook))
+  (format t "~%")
+  (format t "┌─────────────────────────────────────────────┐~%")
+  (format t "│  ERROR: ~A~%" (type-of condition))
+  (format t "│~%")
+  (format t "│  Run: passepartout doctor~%")
+  (format t "│  For system diagnostics~%")
+  (format t "└─────────────────────────────────────────────┘~%")
+  (format t "~%")
+  (format t "Details: ~A~%" condition)
+  (finish-output)
+  (uiop:quit 1)))
+#+end_src

org/core-loop-act.org

@@ -0,0 +1,241 @@
+#+TITLE: Stage 3: Act (act.lisp)
+#+AUTHOR: Agent
+#+FILETAGS: :harness:act:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-loop-act.lisp
+
+* Overview: Architectural Intent
+
+The Act stage is where cognition meets reality. After the Probabilistic engine proposes an action and the Deterministic engine verifies it, Act executes it through the appropriate actuator.
+
+An actuator is a function that takes (action context) and performs a physical operation: send a message to the TUI, execute a shell command, call a Telegram API, write to a file. Actuators are registered in a global hash table (~*actuator-registry*~) and dispatched by name.
+
+The key architectural choice: **actuators are not privileged**. The same dispatch mechanism that routes to :shell or :file also routes to :telegram or :signal. There is no special handling for dangerous actuators — safety is enforced at the Reason stage by the deterministic engine, not by Act. This means:
+
+1. Adding a new actuator requires no changes to the core — just register it
+2. Safety is centralized in the deterministic gates, not scattered across actuator implementations
+3. Every actuator benefits from the same security checks (the Bouncer, the Policy)
+
+** Why Dispatch-Action Verifies Again?
+
+The Reason stage already ran every proposed action through the deterministic engine. So why does ~loop-gate-act~ call ~deterministic-verify~ again?
+
+Because a skill's deterministic gate runs during Reason, but between Reason and Act, the action might have been transformed by the pipeline (metadata added, format normalized). The last-mile verification catches any transformation that might have introduced an unsafe property. It's the same philosophy as "trust but verify" — the second check is cheap and catches a class of bugs that would otherwise be silent data corruption.
+
+* Implementation
+
+** Package Context
+#+begin_src lisp
+(in-package :passepartout)
+#+end_src
+
+** Actuator Configuration
+
+~*actuator-default*~ determines where actions go when no explicit target is specified. Defaults to ~:cli~.
+
+~*actuator-silent*~ lists actuator targets that don't generate tool-output feedback. For example, sending a message to the CLI or Emacs doesn't need to produce a tool-output event — the user can see the message directly. This prevents redundant feedback loops.
+
+#+begin_src lisp
+(defvar *actuator-default* :cli
+  "The actuator used when no explicit target is specified.")
+
+(defvar *actuator-silent* '(:cli :system-message :emacs)
+  "List of actuators that don't generate tool-output feedback.")
+
+(defun actuator-initialize ()
+  "Register core actuators and load configuration."
+  (let ((def (uiop:getenv "DEFAULT_ACTUATOR"))
+        (silent (uiop:getenv "SILENT_ACTUATORS")))
+    (when def
+      (setf *actuator-default* (intern (string-upcase def) :keyword)))
+    (when silent
+      (setf *actuator-silent*
+            (mapcar (lambda (s) (intern (string-upcase (string-trim '(#\Space) s)) :keyword))
+                    (uiop:split-string silent :separator '(#\,))))))
+
+  (register-actuator :system #'action-system-execute)
+  (register-actuator :tool #'action-tool-execute)
+
+  (register-actuator :tui (lambda (action context)
+                            (declare (ignore context))
+                            (let* ((meta (getf action :meta))
+                                   (stream (getf meta :reply-stream)))
+                              (when (and stream (open-stream-p stream))
+                                (format stream "~a" (frame-message action))
+                                (finish-output stream))))))
+#+end_src
+
+** Action Dispatch (action-dispatch)
+
+Routes an approved action to its registered actuator. The target is resolved in priority order:
+
+1. The explicit ~:target~ field on the action
+2. The source of the original signal (reply to the sender)
+3. The default actuator (~:cli~)
+
+Heartbeats are silently dropped here — they should never generate an actuation.
+
+#+begin_src lisp
+(defun action-dispatch (action context)
+  "Route an approved action to its registered actuator."
+  (let ((payload (proto-get action :payload)))
+    (when (eq (proto-get payload :sensor) :heartbeat)
+      (return-from action-dispatch nil))
+
+    (when (and action (listp action))
+      (let* ((meta (proto-get context :meta))
+             (source (proto-get meta :source))
+             (raw-target (or (proto-get action :target) source *actuator-default*))
+             (target (intern (string-upcase (string raw-target)) :keyword))
+             (actuator-fn (gethash target *actuator-registry*)))
+        (when (and meta (null (getf action :meta)))
+          (setf (getf action :meta) meta))
+        (if actuator-fn
+            (funcall actuator-fn action context)
+            (log-message "ACT ERROR: No actuator registered for '~s'" target))))))
+#+end_src
+
+** System Actuator (action-system-execute)
+
+Handles internal harness commands: ~:eval~ (execute arbitrary Lisp) and ~:message~ (log to the harness log). This is how the deterministic engine communicates results back to the user.
+
+#+begin_src lisp
+(defun action-system-execute (action context)
+  "Execute internal harness commands."
+  (declare (ignore context))
+  (let* ((payload (getf action :payload))
+         (cmd (getf payload :action)))
+    (case cmd
+      (:eval
+       (eval (read-from-string (getf payload :code))))
+      (:message
+       (log-message "ACT [System]: ~a" (getf payload :text)))
+      (t
+       (log-message "ACT ERROR [System]: Unknown command '~s'" cmd)))))
+#+end_src
+
+** Tool Actuator (action-tool-execute)
+
+Executes a registered cognitive tool. Cognitive tools are registered via ~def-cognitive-tool~ in the package.lisp and are the primary way the LLM interacts with the outside world.
+
+The function handles:
+- Tool dispatch by name (case-insensitive lookup)
+- Argument normalization (if the arguments are nested in a list, they're flattened)
+- Result formatting (structured results are sent back to the source)
+- Error handling (tool errors produce ~:tool-error~ events, not crashes)
+
+The tool's return value is packed into a ~:tool-output~ event and fed back into the pipeline, where it becomes the next perception. This is how the agent "sees" the result of its actions.
+
+#+begin_src lisp
+(defun action-tool-execute (action context)
+  "Execute a registered cognitive tool."
+  (let* ((payload (getf action :payload))
+         (tool-name (getf payload :tool))
+         (tool-args (getf payload :args))
+         (depth (getf context :depth 0))
+         (meta (getf context :meta))
+         (source (getf meta :source))
+         (tool (gethash (string-downcase (string tool-name)) *cognitive-tools*)))
+    (if tool
+        (handler-case
+            (let* ((clean-args (if (and (listp tool-args) (listp (car tool-args))) (car tool-args) tool-args))
+                   (result (funcall (cognitive-tool-body tool) clean-args)))
+              (when source
+                (action-dispatch (list :TYPE :REQUEST :TARGET source 
+                                       :PAYLOAD (list :ACTION :MESSAGE :TEXT (tool-result-format tool-name result)))
+                                context))
+              (list :TYPE :EVENT :DEPTH (1+ depth) :META meta
+                    :PAYLOAD (list :SENSOR :tool-output :RESULT result :TOOL tool-name)))
+          (error (c)
+            (list :TYPE :EVENT :DEPTH (1+ depth) :META meta
+                  :PAYLOAD (list :SENSOR :tool-error :TOOL tool-name :MESSAGE (format nil "~a" c)))))
+        (list :TYPE :EVENT :DEPTH (1+ depth) :META meta
+              :PAYLOAD (list :SENSOR :tool-error :MESSAGE (format nil "Tool '~a' not found" tool-name))))))
+#+end_src
+
+** Tool Result Formatting (tool-result-format)
+
+Converts a tool's return value into a human-readable string for display to the user. Handles structured results (plists with ~:status~, ~:content~, ~:message~) and plain values.
+
+#+begin_src lisp
+(defun tool-result-format (tool-name result)
+  "Format a tool result for display."
+  (if (listp result)
+      (let ((status (getf result :status))
+            (content (getf result :content))
+            (msg (getf result :message)))
+        (cond
+          ((and (eq status :success) content) (format nil "~a" content))
+          ((and (eq status :error) msg) (format nil "ERROR [~a]: ~a" tool-name msg))
+          (t (format nil "TOOL [~a] RESULT: ~s" tool-name result))))
+      (format nil "TOOL [~a] RESULT: ~a" tool-name result)))
+#+end_src
+
+** Act Gate (Stage 3)
+
+The final stage of the metabolic pipeline. It receives a signal that has been reasoned (has an ~:approved-action~) and dispatches it.
+
+The gate runs a last-mile deterministic check on the approved action before execution. This catches any issues introduced during pipeline processing (e.g., metadata added by Perceive that changes the action's format).
+
+After dispatch, the gate captures any feedback produced by the actuation (tool output, error events) and returns it to the loop for the next cognitive cycle.
+
+#+begin_src lisp
+(defun loop-gate-act (signal)
+  "Final stage of the metabolic pipeline: Actuation."
+  (let* ((approved (getf signal :approved-action))
+         (type (getf signal :type))
+         (meta (getf signal :meta))
+         (source (getf meta :source))
+         (feedback nil))
+    (when approved
+      (let* ((original-type (getf approved :type))
+             (verified (deterministic-verify approved signal)))
+        (if (and (listp verified) (member (getf verified :type) '(:LOG :EVENT)) (not (member original-type '(:LOG :EVENT))))
+            (progn
+              (log-message "ACT BLOCKED: Action failed last-mile deterministic check.")
+              (setf (getf signal :approved-action) nil)
+              (setf feedback verified))
+            (progn
+              (setf (getf signal :approved-action) verified)
+              (setf approved verified)))))
+
+    (case type
+      (:REQUEST (action-dispatch signal signal))
+      (:LOG (action-dispatch signal signal))
+      (:EVENT
+       (if approved
+           (let* ((target (getf approved :target))
+                  (result (action-dispatch approved signal)))
+             (cond
+               ((and (listp result) (member (getf result :type) '(:EVENT :LOG)))
+                (setf feedback result))
+               ((and result (not (member target *actuator-silent*)))
+                (setf feedback (list :type :EVENT :depth (1+ (getf signal :depth 0)) :meta meta
+                                    :payload (list :sensor :tool-output :result result :tool approved))))))
+           (when source (action-dispatch signal signal)))))
+    (setf (getf signal :status) :acted)
+    feedback))
+#+end_src
+
+* Test Suite
+Verifies that the act gate correctly processes an approved action and sets the signal status to ~:acted~.
+#+begin_src lisp :tangle ../lisp/core-loop-act.lisp
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-pipeline-act-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:pipeline-act-suite))
+
+(in-package :passepartout-pipeline-act-tests)
+
+(def-suite pipeline-act-suite :description "Test suite for Act pipeline")
+(in-suite pipeline-act-suite)
+
+(test test-loop-gate-act-basic
+  (clrhash passepartout::*skills-registry*)
+  (let* ((signal (list :type :EVENT :status nil :depth 0 :approved-action '(:target :cli :payload (:text "Hello"))))
+         (result (loop-gate-act signal)))
+    (is (eq :acted (getf signal :status)))
+    (is (null result))))
+#+end_src

org/core-loop-perceive.org

@@ -0,0 +1,169 @@
+#+TITLE: Stage 1: Perceive (perceive.lisp)
+#+AUTHOR: Agent
+#+FILETAGS: :harness:perceive:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-loop-perceive.lisp
+
+* Overview: Architectural Intent
+
+The Perceive stage is the sensory cortex of Passepartout. It receives raw stimuli from diverse sources — terminal input, Emacs buffers, Telegram messages, Signal chats, heartbeat clocks, shell command outputs — and normalizes them into a single Signal format that the rest of the pipeline can process.
+
+Each source has its own format and protocol. The CLI sends raw text. Emacs sends AST diffs. Telegram sends JSON. Without normalization, every downstream component (Reason, Act) would need to understand every input format. With normalization:
+
+1. The gateway layer (CLI, Emacs, Telegram, Signal) just sends raw messages
+2. Perceive transforms them into Signals regardless of origin
+3. Reason and Act work with a single, consistent plist format
+4. Adding a new gateway requires gateway code only — no changes to core
+
+This is the "thin harness, fat skills" principle applied to input processing. The harness does the minimal normalization needed to produce a uniform Signal; the actual interpretation is left to skills.
+
+** Why the Async/Sync Split?
+
+Perceive handles two kinds of stimuli:
+- **Synchronous** (user input, chat messages) — these must be processed in order, one at a time, because each depends on the state left by the previous one
+- **Asynchronous** (heartbeats, background sensor readings, delegation results) — these can be processed in parallel because they don't depend on user intent
+
+The `*loop-async-sensors*` list defines which sensor types are processed in dedicated threads. Everything else goes through the main synchronous pipeline.
+
+The depth limit prevents runaway recursive loops. A signal that generates another signal that generates another signal can infinite-loop. If depth exceeds a threshold (10), the signal is silently dropped rather than processed. This is the metabolic loop's circuit breaker.
+
+* Implementation
+
+** Package Context
+#+begin_src lisp
+(in-package :passepartout)
+#+end_src
+
+** Interrupt Flag
+
+A global interrupt flag that can be set by any signal. When set, the metabolic loop should stop processing and clean up. This is used for graceful shutdown: a SIGINT or /exit command sets the flag, and the loop exits at the next cycle boundary.
+
+#+begin_src lisp
+(defvar *loop-interrupt* nil)
+#+end_src
+
+** Sensor Configuration
+
+~*loop-async-sensors*~ lists the sensor types that should be processed in their own threads. Currently, ~:chat-message~, ~:delegation~, and ~:user-command~ are async because they don't block the main reasoning loop — the agent can process a Telegram message while waiting for the user's next input.
+
+~*loop-focus-id*~ tracks what the user is currently looking at in Emacs. When the user moves their cursor to a different Org headline, the buffer-update signal updates this ID. The Reason stage uses it to build the foveal-peripheral context model: the current headline gets full detail, everything else gets a skeletal outline.
+
+#+begin_src lisp
+(defvar *loop-async-sensors* '(:chat-message :delegation :user-command)
+  "Sensors that are processed in dedicated threads.")
+
+(defvar *loop-focus-id* nil
+  "The Org ID of the node the user is currently interacting with.")
+#+end_src
+
+** Stimulus Injection (stimulus-inject)
+
+This is the entry point that gateways call to send a message into the cognitive pipeline. It sets metadata (source, session ID, reply stream), decides whether the stimulus should be processed synchronously or on a background thread, and wraps the whole thing in error recovery so that no single bad stimulus can crash the system.
+
+The error recovery uses Common Lisp's restart system. If any error occurs during processing, a `skip-event` restart is available. The handler displays the error, then invokes `skip-event` which drops the stimulus and continues. This is the "fail open" safety model — better to drop one message than to crash the entire agent.
+
+#+begin_src lisp
+(defun stimulus-inject (raw-message &key stream (depth 0))
+  "Inject a raw message into the signal processing pipeline."
+  (let* ((payload (getf raw-message :payload))
+         (sensor (getf payload :sensor))
+         (meta (getf raw-message :meta))
+         (async-p (or (getf payload :async-p)
+                     (member sensor *loop-async-sensors*))))
+
+    (unless meta
+      (setf meta (list :SOURCE :SYSTEM :SESSION-ID "internal")))
+
+    (when stream
+      (setf (getf meta :reply-stream) stream))
+
+    (setf (getf raw-message :meta) meta)
+    (setf (getf raw-message :depth) depth)
+
+    (if async-p
+        (bt:make-thread
+         (lambda ()
+           (restart-case (process-signal raw-message)
+             (skip-event () nil)))
+         :name "passepartout-async-task")
+        
+        (restart-case
+            (handler-bind ((error (lambda (c)
+                                    (log-message "SYSTEM ERROR: ~a" c)
+                                    (invoke-restart 'skip-event))))
+              (process-signal raw-message))
+          (skip-event ()
+            (log-message "SYSTEM RECOVERY: Stimulus dropped."))))))
+#+end_src
+
+** Perceive Gate (loop-gate-perceive)
+
+The perceive gate is the first stage of the metabolic pipeline. It receives a normalized signal and routes it based on the event type:
+
+- ~:EVENT~ with ~:buffer-update~ — an Emacs buffer changed (new Org headline created, text edited). The change is ingested into memory so the agent has the latest state.
+- ~:EVENT~ with ~:point-update~ — the user moved their cursor to a different headline. The foveal focus is updated, and the node at the cursor is ingested at higher priority.
+- ~:EVENT~ with ~:interrupt~ — the user requested an interrupt. The interrupt flag is set.
+- ~:RESPONSE~ — an action completed. The gate logs the result status.
+
+All signals get tagged with their processing stage (`:status :perceived`) and the current foveal focus before being passed to the Reason stage.
+
+#+begin_src lisp
+(defun loop-gate-perceive (signal)
+  "Stage 1 of the metabolic pipeline: Normalize sensory input."
+  (let* ((payload (getf signal :payload))
+         (type (getf signal :type))
+         (meta (getf signal :meta))
+         (sensor (getf payload :sensor)))
+
+    (log-message "GATE [Perceive]: ~a (~a) [Source: ~s]"
+                 type (or sensor "no-sensor") (getf meta :source))
+
+    (cond ((eq type :EVENT)
+           (case sensor
+             (:buffer-update
+              (let ((ast (getf payload :ast)))
+                (when ast
+                  (snapshot-memory)
+                  (ingest-ast ast))))
+             (:point-update
+              (let ((element (getf payload :element)))
+                (when element
+                  (snapshot-memory)
+                  (setf *loop-focus-id* (getf element :id))
+                  (ingest-ast element))))
+             (:interrupt
+              (setf *loop-interrupt* t))))
+          ((eq type :RESPONSE)
+           (log-message "GATE [Perceive]: Act Result -> ~a" (getf payload :status))))
+
+    (setf (getf signal :status) :perceived)
+    (setf (getf signal :foveal-focus) *loop-focus-id*)
+    signal))
+#+end_src
+
+* Test Suite
+Verifies that the perceive gate correctly ingests AST nodes into memory and that the depth limiter prevents runaway recursive signals.
+#+begin_src lisp :tangle ../lisp/core-loop-perceive.lisp
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-pipeline-perceive-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:pipeline-perceive-suite))
+
+(in-package :passepartout-pipeline-perceive-tests)
+
+(def-suite pipeline-perceive-suite :description "Test suite for Perceive pipeline")
+(in-suite pipeline-perceive-suite)
+
+(test test-loop-gate-perceive
+  (clrhash passepartout::*memory*)
+  (let* ((signal (list :type :EVENT :payload (list :sensor :buffer-update :ast (list :type :HEADLINE :properties (list :ID "test-node" :TITLE "Test") :contents nil))))
+         (result (loop-gate-perceive signal)))
+    (is (eq :perceived (getf result :status)))
+    (is (not (null (gethash "test-node" passepartout::*memory*))))))
+
+(test test-depth-limiting
+  (let ((runaway-signal (list :type :EVENT :depth 11 :payload (list :sensor :heartbeat))))
+    (is (null (process-signal runaway-signal)))))
+#+end_src

org/core-loop-reason.org

@@ -0,0 +1,318 @@
+#+TITLE: Stage 2: Reason (reason.lisp)
+#+AUTHOR: Agent
+#+FILETAGS: :harness:reason:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-loop-reason.lisp
+
+* Overview: Architectural Intent
+
+The Reason stage is the cognitive heart of Passepartout. It takes a normalized signal from Perceive and produces an approved action for Act. This is where the two engines — probabilistic (LLM) and deterministic (Lisp logic) — collaborate.
+
+The design is shaped by one non-negotiable constraint: **the LLM must never touch the actuators directly.** Every action the LLM proposes must pass through a deterministic verification gate that has the final say. This is what separates Passepartout from every other AI agent: the creative brain suggests, but the logical brain decides.
+
+** The Probabilistic-Deterministic Split
+
+An LLM is a statistical engine. Given enough context, it is remarkably good at translation, generation, and pattern matching. But it cannot be trusted with authority because hallucination is a *fundamental property* of probabilistic inference — the model generates the most likely continuation, not the correct one.
+
+The deterministic engine addresses this by being what the probabilistic engine is not: mathematically rigorous, formally verifiable, and incapable of hallucination by design. It operates on explicit symbolic representations — lists, property lists, knowledge graphs — not on floating-point activations. When it evaluates a path confinement check, it returns true or false, not a probability distribution.
+
+The division of labor is architectural:
+- The LLM handles the fuzzy interface between human language and structured representation
+- The deterministic engine receives those structured representations and evaluates them against formal invariants
+- The LLM never reads a file, never executes a command, never modifies memory — it generates proposals
+
+This separation is the source of Passepartout's safety guarantee. Other agents add "guardrails" as an afterthought — a layer of filtering around a dangerous core. Passepartout makes the division explicit.
+
+** Why Plists for Communication?
+
+Every message in the Reason pipeline is a property list (plist):
+
+  (TYPE :REQUEST TARGET :CLI PAYLOAD (ACTION :MESSAGE TEXT "Hello"))
+
+A plist is simultaneously:
+- Human-readable text
+- Machine-parseable data structure
+- Executable Lisp code
+
+This is not a cosmetic choice. It means the reasoning pipeline can generate, modify, and execute its own communication protocol without external parsing libraries. There is no JSON encoder, no schema validator, no serialization layer between the two engines. They speak the same language because they *are* the same language.
+
+* Implementation
+
+** Package Context
+#+begin_src lisp
+(in-package :passepartout)
+#+end_src
+
+** Probabilistic Engine State
+
+The probabilistic engine maintains four pieces of global state that control how LLM requests are dispatched:
+
+~*backend-registry*~ is a hash table mapping provider keywords (like ~:ollama~ or ~:openrouter~) to the actual function that calls that provider's API. ~*provider-cascade*~ is the ordered list of providers to try — if the first one fails, the cascade falls through to the next. ~*model-selector*~ is an optional function that examines the context and picks a model per request (useful for routing simple questions to a small fast model and complex reasoning to a large expensive one). ~*consensus-enabled*~ toggles multi-provider agreement, where multiple LLMs run the same prompt and the system waits for consensus.
+
+These variables are configurable at runtime. The cascade can be changed without restart: (setf *provider-cascade* (quote (:ollama :openrouter))).
+
+#+begin_src lisp
+(defvar *backend-registry* (make-hash-table :test 'equal))
+#+end_src
+
+#+begin_src lisp
+(defvar *provider-cascade* nil)
+#+end_src
+
+#+begin_src lisp
+(defvar *model-selector* nil)
+#+end_src
+
+#+begin_src lisp
+(defvar *consensus-enabled* nil)
+#+end_src
+
+** Backend Registration (backend-register)
+
+Each LLM provider registers itself by calling this function. The backend function receives a prompt string, a system prompt string, and optional keyword arguments for model selection. It must return either a plist with ~:status :success~ and ~:content~, or ~:status :error~ with a message.
+
+Registration is typically done at boot time by the unified-llm-backend skill, but can also be done dynamically:
+  (backend-register :my-custom-provider #'my-fn)
+
+#+begin_src lisp
+(defun backend-register (name fn)
+  (setf (gethash name *backend-registry*) fn))
+#+end_src
+
+** Cascade Dispatch (backend-cascade-call)
+
+Given a prompt, this function iterates through the provider cascade and calls each backend in order until one succeeds. A provider "succeeds" when it returns ~:status :success~ with content, or when it returns a plain string (the LLM's raw output).
+
+The function has a fallback for every failure mode:
+- If a backend returns ~:status :error~, the cascade moves to the next provider
+- If a backend throws an exception, it is caught and logged, and the cascade moves on
+- If ALL backends are exhausted, a structured LOG message is returned saying "Neural Cascade Failure"
+
+This is deliberately resilient. The system should never crash because an LLM provider is down. It should log the failure, try the next provider, and if all fail, return a diagnostic message that the deterministic engine can present to the user.
+
+#+begin_src lisp
+(defun backend-cascade-call (prompt &key
+                                (system-prompt "You are the Probabilistic engine.")
+                                (cascade nil)
+                                (context nil))
+  (let ((backends (or cascade *provider-cascade*)))
+    (or (dolist (backend backends)
+          (let ((backend-fn (gethash backend *backend-registry*)))
+            (when backend-fn
+              (log-message "PROBABILISTIC: Attempting backend ~a..." backend)
+              (let* ((model (when *model-selector*
+                              (funcall *model-selector* backend context)))
+                     (result (if model
+                                 (funcall backend-fn prompt system-prompt :model model)
+                                 (funcall backend-fn prompt system-prompt))))
+                (cond ((and (listp result) (eq (getf result :status) :success))
+                       (return (getf result :content)))
+                      ((stringp result)
+                       (return result))
+                      (t
+                       (log-message "PROBABILISTIC: Backend ~a failed: ~a"
+                                   backend (getf result :message))))))))
+        (list :type :LOG
+              :payload (list :text "Neural Cascade Failure: All providers exhausted.")))))
+#+end_src
+
+** Cognitive Proposal Generation (think)
+
+The ~think~ function is where the creative brain does its work. It assembles the full context for the LLM: the system identity, the available tools, the current global context from memory, the recent system logs, and any rejection trace from a previous failed proposal. It also collects augment strings from any skill that has registered a ~system-prompt-augment~ function.
+
+A note on the augment system: skills can contribute context-specific mandates to the LLM prompt. For example, the REPL skill injects the "prototype in the REPL first" mandate when the context suggests the agent is editing Lisp code. This keeps domain-specific instructions out of the harness while still ensuring they appear in the prompt when relevant.
+
+The LLM's response is expected to be a plist. If it is, it gets parsed and normalized. If it's a string that starts with ~(~ or ~[~, it's read as Lisp data. If it's neither, it falls back to a REQUEST with a MESSAGE action — the raw text.
+
+** Pre-processing: strip markdown from LLM output
+
+LLMs often wrap structured output in markdown code fences:
+
+  ```lisp
+  (:TYPE :REQUEST ...)
+  ```
+
+This function strips the fences so the reader can parse the plist.
+
+#+begin_src lisp
+(defun markdown-strip (text)
+  (if (and text (stringp text))
+      (let ((cleaned text))
+        (setf cleaned (cl-ppcre:regex-replace-all "^```[a-z]*\\n" cleaned ""))
+        (setf cleaned (cl-ppcre:regex-replace-all "\\n```$" cleaned ""))
+        (setf cleaned (cl-ppcre:regex-replace-all "```" cleaned ""))
+        (string-trim '(#\Space #\Newline #\Tab) cleaned))
+      text))
+#+end_src
+
+** Normalize plist keywords
+
+Lisp keywords are case-sensitive. The LLM might produce ~:payload~ or ~:PAYLOAD~ or ~:Payload~ depending on the model. This function normalizes all keyword keys to uppercase to ensure the deterministic engine receives consistent input.
+
+#+begin_src lisp
+(defun plist-keywords-normalize (plist)
+  (when (listp plist)
+    (loop for (k v) on plist by #'cddr
+          collect (if (and (symbolp k) (not (keywordp k)))
+                       (intern (string k) :keyword)
+                       k)
+          collect v)))
+#+end_src
+
+** Think: assemble context and call the LLM
+
+This is the main entry point for the probabilistic engine. Every cognitive cycle goes through here.
+
+The function handles several cases:
+- If a triggered skill provides a probabilistic prompt generator, that replaces the raw user input
+- If the previous proposal was rejected, the rejection trace is injected into the LLM's context so it can self-correct
+- Skills can augment the system prompt with domain-specific mandates via the ~system-prompt-augment~ mechanism
+
+The system prompt assembly order — identity, tools, context, logs, mandates — is intentional: the most dynamic content (mandates from skills) comes last so it has the most influence on the LLM's output.
+
+#+begin_src lisp
+(defun think (context)
+  (let* ((active-skill (find-triggered-skill context))
+         (tool-belt (generate-tool-belt-prompt))
+         (global-context (context-assemble-global-awareness))
+         (system-logs (context-get-system-logs))
+         (assistant-name (or (uiop:getenv "MEMEX_ASSISTANT") "Agent"))
+         (rejection-trace (proto-get (proto-get context :payload) :rejection-trace))
+         (prompt-generator (when active-skill (skill-probabilistic-prompt active-skill)))
+         (raw-prompt (if prompt-generator
+                         (funcall prompt-generator context)
+                         (let ((p (proto-get (proto-get context :payload) :text)))
+                           (if (and p (stringp p)) p "Maintain metabolic stasis."))))
+         (reflection-feedback (if rejection-trace
+                                  (format nil "~%~%PREVIOUS PROPOSAL REJECTED: ~a" rejection-trace)
+                                  ""))
+         (skill-augments (let ((augments ""))
+                           (maphash (lambda (name skill)
+                                      (declare (ignore name))
+                                      (let ((aug-fn (skill-system-prompt-augment skill)))
+                                        (when aug-fn
+                                          (let ((aug-text (ignore-errors (funcall aug-fn context))))
+                                            (when (and aug-text (stringp aug-text) (> (length aug-text) 0))
+                                              (setf augments (concatenate 'string augments aug-text (string #\Newline))))))))
+                                    *skills-registry*)
+                           (when (> (length augments) 0) augments)))
+         (system-prompt (format nil "IDENTITY: ~a~a~%~%TOOLS:~%~a~%~%CONTEXT:~%~a~%~%LOGS:~%~a~%~a" 
+                                assistant-name reflection-feedback tool-belt global-context system-logs
+                                (or skill-augments ""))))
+    (let* ((thought (backend-cascade-call raw-prompt :system-prompt system-prompt :context context))
+           (cleaned (markdown-strip thought)))
+       (if (and cleaned (stringp cleaned) (> (length cleaned) 0) (or (char= (char cleaned 0) #\() (char= (char cleaned 0) #\[)))
+           (handler-case
+               (let ((parsed (read-from-string cleaned)))
+                 (if (listp parsed)
+                     (plist-keywords-normalize parsed)
+                     (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned :EXPLANATION "Generated by the Probabilistic engine."))))
+             (error () (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT cleaned :EXPLANATION "Generated by the Probabilistic engine."))))
+            (list :TYPE :REQUEST :PAYLOAD (list :ACTION :MESSAGE :TEXT (if (stringp cleaned) cleaned "No response") :EXPLANATION "Generated by the Probabilistic engine."))))))
+#+end_src
+
+** Deterministic Engine (cognitive-verify)
+
+The deterministic engine is the strict guard. It receives a proposed action from the probabilistic engine and runs it through every registered deterministic gate, sorted by priority.
+
+Skills register deterministic gates via ~defskill~ with the ~:deterministic~ keyword. Each gate is a function that receives (action context) and returns either:
+- A modified action (the gate approves or adjusts the proposal)
+- A LOG or EVENT plist (the gate rejects the proposal with a reason)
+
+Gates run in priority order, highest first. If any gate returns a LOG or EVENT, the proposal is rejected immediately and the rejection reason flows back to the probabilistic engine via the rejection trace. If all gates pass, the proposal is approved.
+
+This architecture makes safety compositional: each skill adds one constraint. The bouncer checks secrets. The policy checks explanations. The shell actuator checks destructive commands. No single skill needs to understand the full security model.
+
+#+begin_src lisp
+(defun cognitive-verify (proposed-action context)
+  (let ((current-action proposed-action)
+        (skills nil))
+    (maphash (lambda (name skill)
+               (declare (ignore name))
+               (when (skill-deterministic-fn skill)
+                 (push skill skills)))
+             *skills-registry*)
+    (setf skills (sort skills #'> :key #'skill-priority))
+    (dolist (skill skills)
+      (let ((trigger (skill-trigger-fn skill))
+            (gate (skill-deterministic-fn skill)))
+        (when (or (null trigger) (ignore-errors (funcall trigger context)))
+          (let ((next-action (funcall gate current-action context)))
+            (when (and (listp next-action)
+                       (member (proto-get next-action :type) '(:LOG :EVENT)))
+              (log-message "DETERMINISTIC: Intercepted by skill '~a'" (skill-name skill))
+              (return-from cognitive-verify next-action))
+             (when next-action (setf current-action next-action))))))
+    current-action))
+#+end_src
+
+** Reason Gate (Stage 2)
+
+The reason gate is the pipeline stage that orchestrates Think + Determine. It receives a signal, checks if it requires reasoning (only ~:user-input~ and ~:chat-message~ events do), and runs through the cognitive + verification loop.
+
+The loop has retry logic: up to 3 attempts. If the deterministic engine rejects a proposal, the rejection reason is fed back into the next think call so the LLM can self-correct. This loop — propose, reject, correct, re-propose — is the core mechanism by which the agent improves its own output without human intervention.
+
+The retry limit prevents infinite loops. If the LLM cannot produce a passable proposal within 3 attempts, the last rejection reason is attached to the signal and the acted pipeline sees a failed reasoning cycle.
+
+#+begin_src lisp
+(defun loop-gate-reason (signal)
+  (let* ((type (proto-get signal :type))
+         (payload (proto-get signal :payload))
+         (sensor (proto-get payload :sensor)))
+    (unless (and (eq type :EVENT) (member sensor '(:user-input :chat-message)))
+      (return-from loop-gate-reason signal))
+    (let ((retries 3)
+          (current-signal (copy-tree signal))
+          (last-rejection nil))
+      (loop
+        (when (<= retries 0)
+          (setf (getf signal :approved-action) last-rejection)
+          (setf (getf signal :status) :reasoned)
+          (return signal))
+        (when last-rejection
+          (setf (getf (getf current-signal :payload) :rejection-trace) last-rejection))
+        (let ((candidate (think current-signal)))
+          (if (and candidate (listp candidate))
+              (let ((verified (cognitive-verify candidate current-signal)))
+                (if (member (getf verified :type) '(:LOG :EVENT))
+                    (progn (decf retries) (setf last-rejection verified))
+                    (progn
+                      (setf (getf signal :approved-action) verified)
+                      (setf (getf signal :status) :reasoned)
+                      (return signal))))
+              (progn
+                (setf (getf signal :approved-action) nil)
+                (setf (getf signal :status) :reasoned)
+                (return signal))))))))
+#+end_src
+
+* Test Suite
+Verifies that the deterministic engine correctly rejects unsafe actions (like ~rm -rf /~) while allowing safe ones.
+#+begin_src lisp :tangle ../lisp/core-loop-reason.lisp
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-pipeline-reason-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:pipeline-reason-suite))
+
+(in-package :passepartout-pipeline-reason-tests)
+
+(def-suite pipeline-reason-suite :description "Test suite for Reason pipeline")
+(in-suite pipeline-reason-suite)
+
+(test test-decide-gate-safety
+  (clrhash passepartout::*skills-registry*)
+  (passepartout::defskill :mock-safety
+    :priority 50
+    :trigger (lambda (ctx) (declare (ignore ctx)) t)
+    :deterministic (lambda (action ctx)
+                    (declare (ignore ctx))
+                    (if (search "rm -rf" (format nil "~s" action))
+                        (list :type :LOG :payload (list :text "Rejected"))
+                        action)))
+  (let* ((candidate '(:type :REQUEST :payload (:action :shell :cmd "rm -rf /")))
+         (signal '(:type :EVENT :payload (:sensor :user-input)))
+         (result (cognitive-verify candidate signal)))
+    (is (eq :LOG (getf result :type)))))
+#+end_src

org/core-loop.org

@@ -0,0 +1,278 @@
+#+TITLE: The Metabolic Loop (loop.lisp)
+#+AUTHOR: Agent
+#+FILETAGS: :harness:loop:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-loop.lisp
+
+* Overview: Architectural Intent
+
+The Metabolic Loop is the cranial nerve reflex of Passepartout. While skills provide specialized intelligence, the loop provides the fundamental rhythm of existence: the continuous processing of signals from perception through cognition to action.
+
+Every signal flows through three stages:
+1. **Perceive** — normalize raw input into a standard Signal format
+2. **Reason** — think (LLM) then verify (deterministic gates)
+3. **Act** — dispatch the approved action to the appropriate actuator
+
+If a stage produces a new signal (e.g., the Act stage produces a tool-output event), that signal feeds back into Perceive and the loop continues. This is how the agent has multi-step conversations: each LLM response produces an action, which produces a tool output, which feeds back as a new perception, which triggers the next reasoning cycle.
+
+** Why Separate Stages?
+
+A single function that called the LLM, checked safety, and executed the result would be simpler to write. But it would be impossible to:
+- Test each stage independently (a bug in the LLM call would block safety testing)
+- Insert new stages between P and R or R and A (adding consensus means adding a gate in the middle)
+- Recover from failures mid-pipeline (an LLM timeout shouldn't prevent safety checks on the next cycle)
+
+The stage separation is the functional equivalent of the "thin harness" principle: each stage is a pure function that transforms a signal. The loop is the composition of these functions.
+
+** Why the Depth Limit?
+
+A signal that generates another signal that generates another signal can infinite-loop. The depth limit (max 10) prevents this. If depth exceeds 10, the signal is silently dropped. This is the metabolic loop's circuit breaker.
+
+The three-tier error recovery model:
+1. **Transient errors** (tool failures, network timeouts) — recoverable, generate a :loop-error signal at higher depth for retry
+2. **Critical errors** (undefined functions, malformed data) — require memory rollback to the last snapshot
+3. **Recursive loops** (signals generating more signals indefinitely) — depth limit enforcement
+
+* Implementation
+
+** Package Context
+#+begin_src lisp
+(in-package :passepartout)
+#+end_src
+
+** Global Interrupt State
+
+Thread-safe interrupt flag. The ~*loop-interrupt-lock*~ mutex protects access so that the signal handler and the main loop don't race on shutdown.
+
+#+begin_src lisp
+(defvar *interrupt-flag* nil
+  "Atomic flag set by signal handlers to trigger graceful shutdown.")
+
+(defvar *loop-interrupt-lock* (bt:make-lock "harness-interrupt-lock")
+  "Mutex protecting *interrupt-flag* access.")
+
+(defvar *heartbeat-thread* nil
+  "Handle to the heartbeat thread.")
+#+end_src
+
+** Core Engine (loop-process)
+
+The entry point to the metabolic pipeline. Each cycle runs Perceive → Reason → Act. If Act produces feedback (a new signal), the loop continues with that signal at the same depth.
+
+The function handles four failure modes:
+- **Depth exceeded**: signal dropped, nil returned
+- **Interrupt flag**: graceful shutdown, nil returned
+- **Handler error**: caught by handler-case, logged, and depending on the sensor type and depth:
+  - Normal errors at low depth → memory rollback + retry as :loop-error
+  - :loop-error and :tool-error at any depth → dropped (avoids infinite retry loops)
+  - High-depth errors (depth > 2) → dropped (avoids cascading failures)
+- **Unhandled error**: the handler-case catches everything, preventing any single bad signal from crashing the agent
+
+#+begin_src lisp
+(defun loop-process (signal)
+  "The entry point to the Metabolic Pipeline: Perceive -> Reason -> Act."
+  (let ((current-signal signal))
+    (loop while current-signal do
+      (let ((depth (getf current-signal :depth 0))
+            (meta (getf current-signal :meta)))
+        (when (> depth 10)
+          (log-message "METABOLISM ERROR: Max recursion depth reached.")
+          (return nil))
+
+        (when (bt:with-lock-held (*loop-interrupt-lock*) *interrupt-flag*)
+          (log-message "METABOLISM: Interrupted by shutdown signal.")
+          (return nil))
+
+        (handler-case
+            (progn
+              (setf current-signal (perceive-gate current-signal))
+              (setf current-signal (reason-gate current-signal))
+              (let ((feedback (act-gate current-signal)))
+                (if feedback
+                    (progn
+                      (unless (getf feedback :meta) (setf (getf feedback :meta) meta))
+                      (setf current-signal feedback))
+                    (setf current-signal nil))))
+          (error (c)
+            (let ((sensor (ignore-errors (getf (getf current-signal :payload) :sensor))))
+              (log-message "METABOLISM CRASH [~a]: ~a" (or sensor :unknown) c)
+              (unless (member sensor '(:loop-error :tool-error :syntax-error))
+                (log-message "CRITICAL ERROR: Initiating Micro-Rollback.")
+                (rollback-memory 0))
+              (if (or (> depth 2) (member sensor '(:loop-error :tool-error)))
+                  (setf current-signal nil)
+                  (setf current-signal
+                        (list :type :EVENT :depth (1+ depth) :meta meta
+                              :payload (list :sensor :loop-error :message (format nil "~a" c) :depth depth)))))))))))
+#+end_src
+
+** Heartbeat Mechanism
+
+The heartbeat is a background thread that fires every N seconds (configurable via ~HEARTBEAT_INTERVAL~ env var, default 60). On each tick, it:
+
+1. Increments the save counter and saves memory to disk when the counter exceeds the auto-save interval (default 300s)
+2. Injects a ~:heartbeat~ signal into the pipeline
+
+The heartbeat signal is how background skills (Gardener, Scribe) get triggered without user input. These skills have triggers that match ~:sensor :heartbeat~ and run maintenance tasks during idle cycles.
+
+#+begin_src lisp
+(defvar *memory-auto-save-interval* 300)
+(defvar *heartbeat-save-counter* 0)
+
+(defun heartbeat-start ()
+  "Starts the background heartbeat thread."
+  (let ((interval (or (ignore-errors (parse-integer (uiop:getenv "HEARTBEAT_INTERVAL"))) 60))
+        (auto-save (or (ignore-errors (parse-integer (uiop:getenv "MEMORY_AUTO_SAVE_INTERVAL"))) *memory-auto-save-interval*)))
+    (setf *memory-auto-save-interval* auto-save)
+    (setf *heartbeat-save-counter* 0)
+
+    (setf *heartbeat-thread*
+          (bt:make-thread
+           (lambda ()
+             (loop
+               (sleep interval)
+               (incf *heartbeat-save-counter*)
+               (when (>= *heartbeat-save-counter* (/ *memory-auto-save-interval* interval))
+                 (setf *heartbeat-save-counter* 0)
+                 (save-memory-to-disk))
+               (inject-stimulus
+                 (list :type :EVENT :payload (list :sensor :heartbeat :unix-time (get-universal-time))))))
+           :name "passepartout-heartbeat"))))
+#+end_src
+
+** Shutdown Save Flag
+
+Controls whether memory is saved on shutdown. Useful for testing when you want a clean state on next boot.
+
+#+begin_src lisp
+(defvar *shutdown-save-enabled* t)
+#+end_src
+
+** System Health Status
+
+Used by the health check protocol and the daemon's status endpoint. Set by ~diagnostics-startup-run~ during boot.
+
+- ~:healthy~ — all checks passed
+- ~:degraded~ — checks found issues but the daemon can still run
+- ~:unhealthy~ — checks failed, the daemon may not function correctly
+- ~:unknown~ — health check hasn't run yet
+
+#+begin_src lisp
+(defvar *system-health* :unknown
+  "Current system health status: :healthy, :degraded, :unhealthy, or :unknown.")
+
+(defvar *health-check-ran* nil
+  "Flag indicating if initial health check has completed.")
+#+end_src
+
+** Proactive Doctor
+
+Runs the doctor diagnostics automatically at startup. If the doctor finds issues (missing dependencies, misconfigured providers), it prints a diagnostic message but does NOT block the daemon from starting. The user can see the issues and run ~passepartout doctor --fix~ to repair.
+
+This is the "fail open" principle applied to boot: the system should start even with problems, not refuse to start until everything is perfect.
+
+#+begin_src lisp
+(defun diagnostics-startup-run ()
+  "Runs the doctor diagnostics on startup. Returns health status."
+  (format t "~%")
+  (format t "==================================================~%")
+  (format t " DOCTOR: Running Startup Health Check~%")
+  (format t "==================================================~%")
+  (handler-case
+      (progn
+        (when (fboundp 'doctor-run-all)
+          (let ((result (doctor-run-all :auto-install nil)))
+            (setf *health-check-ran* t)
+            (if result
+                (progn
+                  (setf *system-health* :healthy)
+                  (format t "DAEMON: Health check passed. Starting services.~%"))
+                (progn
+                  (setf *system-health* :degraded)
+                  (format t "DAEMON: Health check found issues.~%")
+                  (format t "         Run 'passepartout doctor --fix' to repair.~%")))))
+        (setf *health-check-ran* t))
+    (error (c)
+      (format t "DOCTOR ERROR: ~a~%" c)
+      (setf *system-health* :unhealthy)
+      (setf *health-check-ran* t)))
+  (format t "==================================================~%~%"))
+#+end_src
+
+** Main Entry Point (main)
+
+The top-level entry point. Called by ~passepartout daemon~ and ~passepartout tui~.
+
+Boot sequence:
+1. Load environment variables from ~.config/passepartout/.env~
+2. Load persisted memory state from disk
+3. Register core actuators (:system, :tool, :tui)
+4. Initialize all skills (tangging .lisp or loading from XDG)
+5. Run the proactive health check
+6. Start the heartbeat thread (background maintenance)
+7. Start the TCP daemon (listens for CLI/TUI connections)
+8. Install the SIGINT handler (graceful shutdown on Ctrl+C)
+9. Enter the idle sleep loop (wakes on interrupt)
+
+#+begin_src lisp
+(defun main ()
+  "Entry point for Passepartout. Initializes the system and enters idle loop."
+  (let* ((home (uiop:getenv "HOME"))
+         (env-file (uiop:merge-pathnames* ".config/passepartout/.env" (uiop:ensure-directory-pathname home))))
+    (when (uiop:file-exists-p env-file)
+      (cl-dotenv:load-env env-file)))
+
+  (load-memory-from-disk)
+  (initialize-actuators)
+  (initialize-all-skills)
+  
+  ;; Run proactive doctor before starting services
+  (diagnostics-startup-run)
+  
+  (heartbeat-start)
+  (start-daemon)
+
+  #+sbcl
+  (sb-sys:enable-interrupt sb-unix:sigint
+                            (lambda (sig code scp)
+                              (declare (ignore sig code scp))
+                              (log-message "SHUTDOWN: SIGINT received. Saving memory...")
+                              (when *shutdown-save-enabled* (save-memory-to-disk))
+                              (uiop:quit 0)))
+
+  (let ((sleep-interval (or (ignore-errors (parse-integer (uiop:getenv "DAEMON_SLEEP_INTERVAL"))) 3600)))
+    (loop
+      (when (bt:with-lock-held (*loop-interrupt-lock*) *interrupt-flag*)
+        (log-message "SHUTDOWN: Interrupt flag set. Saving memory...")
+        (when *shutdown-save-enabled* (save-memory-to-disk))
+        (return))
+      (sleep sleep-interval))))
+#+end_src
+
+* Test Suite
+Verifies that the immune system (error handling) correctly catches and reports errors from the cognitive pipeline.
+#+begin_src lisp :tangle ../lisp/core-loop.lisp
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-immune-system-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:immune-suite))
+
+(in-package :passepartout-immune-system-tests)
+
+(def-suite immune-suite :description "Verification of the Immune System (Core Error Hooks)")
+(in-suite immune-suite)
+
+(test loop-error-injection
+  "Verify that a crash in think/decide triggers a :loop-error stimulus."
+  (clrhash passepartout::*skills-registry*)
+  (passepartout:defskill :evil-skill
+    :priority 100
+    :trigger (lambda (ctx) (eq (getf (getf ctx :payload) :sensor) :user-input))
+    :probabilistic (lambda (ctx) (declare (ignore ctx)) (error "CRITICAL BRAIN FAILURE"))
+    :deterministic nil)
+  (passepartout:loop-process '(:type :EVENT :payload (:sensor :user-input)))
+  (let ((logs (passepartout:context-get-system-logs 20)))
+    (is (not (null (find-if (lambda (line) (search "CRITICAL BRAIN FAILURE" line)) logs))))))
+#+end_src

org/core-manifest.org

@@ -0,0 +1,72 @@
+#+TITLE: System Manifest (manifest.org)
+#+AUTHOR: Agent
+#+FILETAGS: :harness:manifest:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../passepartout.asd
+
+* Overview: Architectural Intent
+
+The Manifest is the ASDF system definition for Passepartout. It defines what files belong to the harness, which external libraries are required, and how the test infrastructure is organized.
+
+The ~passepartout.asd~ file tangled from this manifest is what ~ql:quickload :passepartout~ reads to load the system. The files are loaded in the order listed here — dependencies first, then each pipeline stage in order.
+
+* Implementation
+
+** Main System
+
+The core system. The combined ~:depends-on~ list pulls in every external library the agent needs: networking (usocket, dexador, hunchentoot), concurrency (bordeaux-threads), utilities (uiop, cl-ppcre, cl-json, str), security (ironclad), and configuration (cl-dotenv, uuid).
+
+Components are loaded in sequence (~:serial t~): package first (defines the public API), then skills (does the defskill macro), then communication (defines the protocol), then memory (defines org-object), then context (defines peripheral vision), then each pipeline stage in order (perceive, reason, act), then doctor (diagnostics), then loop (orchestration).
+
+#+begin_src lisp
+(defsystem :passepartout
+  :name "Passepartout"
+  :author "Amr Gharbeia"
+  :version "0.3.0"
+  :license "AGPLv3"
+  :description "The Probabilistic-Deterministic Lisp Machine"
+  :depends-on (:usocket :bordeaux-threads :dexador :uiop :cl-dotenv :cl-ppcre :hunchentoot :ironclad :str :cl-json :uuid)
+  :serial t
+  :components ((:file "lisp/core-defpackage")
+               (:file "lisp/core-skills")
+               (:file "lisp/core-communication")
+               (:file "lisp/core-memory")
+               (:file "lisp/core-context")
+               (:file "lisp/core-loop-perceive")
+               (:file "lisp/core-loop-reason")
+               (:file "lisp/core-loop-act")
+               (:file "lisp/core-loop")))
+#+end_src
+
+** Test System
+
+The test system loads on top of ~opencortex~ and adds FiveAM (the test framework). Each test file is tangled from a ~:tangle ../tests/...~ block in the parent org file.
+
+Note: not every harness or skill file has a corresponding test file. Tests exist only for the parts of the system where deterministic verification is most critical — the pipeline stages, the loader, the memory Merkle tree, and the peripheral vision model.
+
+#+begin_src lisp
+(defsystem :passepartout/tests
+  :depends-on (:passepartout :fiveam)
+  :components ((:file "tests/pipeline-act-tests")
+               (:file "tests/boot-sequence-tests")
+               (:file "tests/communication-tests")
+               (:file "tests/immune-system-tests")
+               (:file "tests/memory-tests")
+               (:file "tests/pipeline-perceive-tests")
+               (:file "tests/pipeline-reason-tests")
+               (:file "tests/peripheral-vision-tests")
+               (:file "tests/tui-tests")
+               (:file "tests/utils-org-tests")
+               (:file "tests/utils-lisp-tests")
+               (:file "tests/llm-gateway-tests")))
+#+end_src
+
+** TUI System
+
+The TUI is a standalone system that depends on Croatoan (ncurses bindings) in addition to the core opencortex system. It's loaded separately because Croatoan requires a terminal and is not needed for daemon-mode operation.
+
+#+begin_src lisp
+(defsystem :passepartout/tui
+  :depends-on (:passepartout :croatoan :usocket :bordeaux-threads)
+  :components ((:file "lisp/gateway-tui")))
+#+end_src

org/core-memory.org

@@ -0,0 +1,340 @@
+#+TITLE: The System Memory (memory.lisp)
+#+AUTHOR: Agent
+#+FILETAGS: :harness:memory:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-memory.lisp
+
+* Overview: Architectural Intent
+
+The Memory module is the cognitive bedrock of Passepartout. It is not a database; it is the agent's live, active brain state. Every perception, every action, every decision is recorded here.
+
+Traditional architectures rely on external databases (SQLite, vector DBs, JSON files) which introduce I/O latency, structural impedance, and serialization overhead. Passepartout chooses a different path: the **Single Address Space**. By treating the entire knowledge base as a graph of Lisp pointers in RAM, we achieve microsecond recollection and total structural transparency.
+
+The memory system has three layers:
+1. **Active memory** (~*memory-store*~) — a hash table mapping IDs to ~memory-object~ instances. This is what the agent queries during reasoning.
+2. **Immutable history** (~*memory-history*~) — an append-only hash table keyed by SHA-256 Merkle hash. Every version of every object that has ever existed is preserved here.
+3. **Snapshot stack** (~*memory-snapshots*~) — point-in-time copies of active memory for rollback recovery. Up to 20 snapshots are retained.
+
+** Why Merkle Hashes?
+
+Every ~memory-object~ carries a ~hash~ field computed from its ID, type, attributes, content, and children. This hash is deterministic: the same data always produces the same hash.
+
+The hash serves three purposes:
+1. **Integrity verification** — detect corruption or tampering
+2. **Deduplication** — if an object already exists in history, we reuse the existing entry
+3. **Change detection** — compare hashes to find what changed between snapshots
+
+** Why Snapshots Instead of Git?
+
+Git tracks changes to files. Passepartout tracks changes to live memory state. The snapshot system captures the entire active memory at a point in time, enabling full rollback to any previous state. This is necessary because:
+
+1. The agent modifies memory continuously (learning, noting, deciding) — there's no discrete "commit" boundary
+2. Memory corruption from a bad LLM output can affect multiple objects — snapshot rollback restores all of them atomically
+3. Git can't snapshot the running Lisp image's hash tables
+
+The tradeoff is memory usage: each snapshot is a deep copy of every object in active memory. 20 snapshots means 20x the active memory size. For a typical knowledge base of 10,000 objects, this is manageable (~100MB for 20 snapshots).
+
+* Implementation
+
+** Package Context
+#+begin_src lisp
+(in-package :passepartout)
+#+end_src
+
+** The Object Store
+
+~*memory-store*~ holds the agent's current state. ~*memory-history*~ holds every past version, keyed by Merkle hash.
+
+#+begin_src lisp
+(defvar *memory-store* (make-hash-table :test 'equal))
+(defvar *memory-history* (make-hash-table :test 'equal)
+  "Immutable Merkle-Tree versioning store mapping hashes to objects.")
+#+end_src
+
+** Object Lookup (memory-object-get)
+
+Retrieve a single object by its ID from active memory. Returns nil if the ID doesn't exist.
+
+#+begin_src lisp
+(defun memory-object-get (id)
+  "Retrieves an memory-object by ID from *memory-store*."
+  (gethash id *memory-store*))
+#+end_src
+
+** Object Search by Attribute (memory-objects-by-attribute)
+
+Scan the entire active memory for objects whose attributes plist contains a specific key-value pair. For example, finding all objects with ~:TODO "APPROVED"~ (used by the Bouncer to find approved flight plans).
+
+This is a full scan — O(n) over all objects. For the typical knowledge base size (< 10,000 objects), this is microsecond-fast. For larger datasets, a proper index would be needed.
+
+#+begin_src lisp
+(defun memory-objects-by-attribute (attr value)
+  "Returns all memory-objects whose :ATTRIBUTES plist has ATTR = VALUE."
+  (let ((results nil))
+    (maphash (lambda (id obj)
+               (declare (ignore id))
+               (when (equal (getf (memory-object-attributes obj) attr) value)
+                 (push obj results)))
+             *memory-store*)
+    (nreverse results)))
+#+end_src
+
+** ID Generation (memory-id-generate)
+
+Generates a unique identifier string for a new Org node. Uses the universal time encoded in base-36 for compactness and monotonic ordering (later IDs sort after earlier ones).
+
+#+begin_src lisp
+(defun memory-id-generate ()
+  "Generates a UUIDv4 unique ID. Compatible with Agora Note UUIDs."
+  (concatenate 'string "id-" (string-downcase (format nil "~a" (uuid:make-v4-uuid)))))
+#+end_src
+
+** The Data Structure (memory-object)
+
+The universal data unit. Every stored entity — a note, a task, a project, a person, a decision — is an ~memory-object~. The struct has:
+
+- ~id~ — unique identifier (string)
+- ~type~ — keyword (e.g., ~:HEADLINE~, ~:PROPERTY_DRAWER~)
+- ~attributes~ — property list (e.g., ~(:TITLE "My Note" :TAGS ("project") :TODO "NEXT")~)
+- ~content~ — raw text content
+- ~vector~ — optional embedding vector for semantic search
+- ~parent-id~ — ID of the parent object (for tree structure)
+- ~children~ — list of child IDs
+- ~version~ — Unix timestamp of last modification
+- ~last-sync~ — Unix timestamp of last sync to disk
+- ~hash~ — SHA-256 Merkle hash for integrity verification
+
+#+begin_src lisp
+(defstruct memory-object
+  id type attributes content vector parent-id children version last-sync hash)
+#+end_src
+
+** Serialization Support
+
+Required by the Lisp runtime for saving/loading objects across image restarts via ~make-load-form-saving-slots~.
+
+#+begin_src lisp
+(defmethod make-load-form ((obj memory-object) &optional env)
+  (make-load-form-saving-slots obj :environment env))
+#+end_src
+
+** Deep Copy
+
+Creates an independent copy of an ~memory-object~, including fresh lists for attributes and children. Used by the snapshot system to capture a consistent memory state.
+
+Without deep copy, a snapshot would share structure with the live memory — mutating the live memory would also mutate the snapshot, defeating the purpose of having a recovery point.
+
+#+begin_src lisp
+(defun deep-copy-memory-object (obj)
+  "Creates a full copy of an memory-object, including fresh lists for attributes and children."
+  (make-memory-object :id (memory-object-id obj)
+                  :type (memory-object-type obj)
+                  :attributes (copy-list (memory-object-attributes obj))
+                  :content (memory-object-content obj)
+                  :vector (memory-object-vector obj)
+                  :parent-id (memory-object-parent-id obj)
+                  :children (copy-list (memory-object-children obj))
+                  :version (memory-object-version obj)
+                  :last-sync (memory-object-last-sync obj)
+                  :hash (memory-object-hash obj)))
+#+end_src
+
+** Merkle Tree Integrity (memory-merkle-hash)
+
+Computes a deterministic SHA-256 hash from an object's identity and contents. The hash covers:
+- The object's ID and type
+- All attributes (sorted by key name for determinism)
+- The raw content text
+- The hashes of all children (making the hash a true Merkle tree — changing a descendant changes this hash)
+
+This is NOT a cryptographic signature — it's an integrity check. If any part of an object or its descendants changes, the hash changes.
+
+#+begin_src lisp
+(defun memory-merkle-hash (id type attributes content child-hashes)
+  (let* ((alist (loop for (k v) on attributes by #'cddr collect (cons k v)))
+         (sorted-alist (sort alist #'string< :key (lambda (x) (format nil "~a" (car x)))))
+         (attr-string (format nil "~s" sorted-alist))
+         (children-string (format nil "~{~a~}" child-hashes))
+         (data-string (format nil "ID:~a|TYPE:~s|ATTRS:~a|CONTENT:~a|CHILDREN:~a"
+                               id type attr-string (or content "") children-string))
+         (digester (ironclad:make-digest :sha256)))
+    (ironclad:update-digest digester (ironclad:ascii-string-to-byte-array data-string))
+    (ironclad:byte-array-to-hex-string (ironclad:produce-digest digester))))
+#+end_src
+
+** AST Ingestion (memory-ingest)
+
+The primary entry point for adding data to memory. Given an Org-mode AST (a tree of plists representing headlines and their contents), it recursively:
+
+1. Generates or assigns an ID to each node
+2. Computes the Merkle hash of each node
+3. Checks if the hash already exists in ~*memory-history*~ (deduplication)
+4. Stores the node in ~*memory-store*~ and ~*memory-history*~
+5. Links children to parents
+
+Returns the ID of the root node.
+
+#+begin_src lisp
+(defun ingest-ast (ast &optional parent-id)
+  (let* ((type (getf ast :type))
+         (props (getf ast :properties))
+         (id (or (getf props :ID) (format nil "temp-~a" (get-universal-time))))
+         (contents (getf ast :contents))
+         (raw-content (when (eq type :HEADLINE)
+                        (format nil "~a~%~a" (getf props :TITLE) (or (getf ast :raw-content) ""))))
+         (child-ids nil) (child-hashes nil))
+    (dolist (child contents)
+      (when (listp child)
+        (let ((child-id (ingest-ast child id)))
+          (push child-id child-ids)
+          (let ((child-obj (gethash child-id *memory-store*)))
+            (when child-obj (push (memory-object-hash child-obj) child-hashes))))))
+    (setf child-ids (nreverse child-ids))
+    (setf child-hashes (nreverse child-hashes))
+    (let* ((hash (memory-merkle-hash id type props raw-content child-hashes))
+           (existing-obj (gethash hash *memory-history*))
+           (obj (or existing-obj
+                    (make-memory-object 
+                     :id id :type type :attributes props :content raw-content
+                     :parent-id parent-id :children child-ids
+                     :version (get-universal-time) :last-sync (get-universal-time)
+                     :hash hash))))
+      (unless existing-obj (setf (gethash hash *memory-history*) obj))
+      (setf (gethash id *memory-store*) obj)
+      id)))
+#+end_src
+
+** Snapshot History (~*memory-snapshots*~)
+
+A stack of CoW (copy-on-write) snapshots for rollback. When a critical error occurs, the system can roll back to any of the last 20 snapshots. Newer snapshots are prepended (index 0 = most recent).
+
+#+begin_src lisp
+(defvar *memory-snapshots* nil)
+#+end_src
+
+** Hash Table Copy Utility
+
+Creates a fully independent copy of a hash table. Used by the rollback system to restore saved memory state from a snapshot.
+
+#+begin_src lisp
+(defun memory-hash-table-copy (hash-table)
+  "Creates an independent copy of a hash table."
+  (let ((new-table (make-hash-table :test (hash-table-test hash-table) 
+                                     :size (hash-table-size hash-table))))
+    (maphash (lambda (k v) (setf (gethash k new-table) v)) hash-table)
+    new-table))
+#+end_src
+
+** Memory Snapshot (memory-snapshot)
+
+Captures a point-in-time copy of ~*memory-store*~. Each object is deep-copied so the snapshot is independent of ongoing mutations. The snapshot is prepended to the snapshot stack, and the stack is trimmed to 20 entries.
+
+Called automatically before significant memory mutations (buffer updates from Emacs, AST ingestion). Also callable manually.
+
+#+begin_src lisp
+(defun snapshot-memory ()
+  "Creates a CoW snapshot of *memory-store* for rollback recovery."
+  (let ((snapshot (make-hash-table :test 'equal :size (hash-table-size *memory-store*))))
+    (maphash (lambda (k v) (setf (gethash k snapshot) (deep-copy-memory-object v))) *memory-store*)
+    (push (list :timestamp (get-universal-time) :data snapshot) *memory-snapshots*)
+    (when (> (length *memory-snapshots*) 20)
+      (setf *memory-snapshots* (subseq *memory-snapshots* 0 20)))
+    (log-message "MEMORY - CoW Memory snapshot created.")))
+#+end_src
+
+** Memory Rollback (memory-rollback)
+
+Restores ~*memory-store*~ to a previous snapshot. By default restores the most recent snapshot (index 0). Can specify a specific index to roll back further.
+
+This is the immune system's last resort. When the metabolic loop catches an unhandled error, it calls ~(rollback-memory 0)~ to undo any memory mutations caused by the bad signal.
+
+#+begin_src lisp
+(defun rollback-memory (&optional (index 0))
+  "Restores *memory-store* from a snapshot. INDEX 0 = most recent."
+  (let ((snapshot (nth index *memory-snapshots*)))
+    (if snapshot
+        (progn (setf *memory-store* (memory-hash-table-copy (getf snapshot :data)))
+               (log-message "MEMORY - Memory rolled back to snapshot ~a" index))
+        (log-message "MEMORY ERROR - Snapshot ~a not found." index))))
+#+end_src
+
+** Persistence — Snapshot Path (~*memory-snapshot-path*~)
+
+Configurable path for serialized memory state. Falls back to ~memory.snap~ in the home directory. Can be overridden via ~MEMORY_SNAPSHOT_PATH~ env var.
+
+#+begin_src lisp
+(defvar *memory-snapshot-path* nil)
+
+(defun memory-snapshot-path-ensure ()
+  "Returns the path to the memory snapshot file, resolving env or default."
+  (or *memory-snapshot-path*
+      (let ((env-path (uiop:getenv "MEMORY_SNAPSHOT_PATH")))
+        (setf *memory-snapshot-path*
+              (or env-path (namestring (uiop:merge-pathnames* "memory.snap" (user-homedir-pathname))))))))
+#+end_src
+
+** Save to Disk (memory-save)
+
+Serialises both ~*memory-store*~ and ~*memory-history*~ to a Lisp-readable file. The format is a plist with ~:memory~ and ~:history-store~ keys, each containing an alist of (key . object) pairs.
+
+The serialization uses ~prin1~, which produces human-readable Lisp output. The file can be read with ~read~ on restart.
+
+#+begin_src lisp
+(defun save-memory-to-disk ()
+  "Writes the entire memory and history store to disk as a plist."
+  (let ((path (memory-snapshot-path-ensure)))
+    (with-open-file (stream path :direction :output :if-exists :supersede :if-does-not-exist :create)
+      (let ((memory-alist nil) (history-alist nil))
+        (maphash (lambda (k v) (push (cons k v) memory-alist)) *memory-store*)
+        (maphash (lambda (k v) (push (cons k v) history-alist)) *memory-history*)
+        (prin1 (list :memory memory-alist :history-store history-alist) stream)))
+    (log-message "MEMORY - Saved to ~a" path)))
+#+end_src
+
+** Load from Disk (memory-load)
+
+Restores memory state from a previously saved snapshot file. Called during boot (~main~ in ~loop.org~). If no snapshot file exists, the function returns silently and the agent starts with empty memory.
+
+#+begin_src lisp
+(defun load-memory-from-disk ()
+  "Reads memory state from disk and restores *memory-store* and *memory-history*."
+  (let ((path (memory-snapshot-path-ensure)))
+    (when (uiop:file-exists-p path)
+      (handler-case
+          (with-open-file (stream path :direction :input)
+            (let ((data (read stream nil)))
+              (when data
+                (let ((memory-alist (getf data :memory)) (history-alist (getf data :history-store)))
+                  (setf *memory-store* (make-hash-table :test 'equal :size (length memory-alist)))
+                  (dolist (kv memory-alist) (setf (gethash (car kv) *memory-store*) (cdr kv)))
+                  (setf *memory-history* (make-hash-table :test 'equal :size (length history-alist)))
+                  (dolist (kv history-alist) (setf (gethash (car kv) *memory-history*) (cdr kv)))
+                  (log-message "MEMORY - Loaded from ~a (~a objects)" path (hash-table-size *memory-store*))))))
+          (error (c) (log-message "MEMORY WARNING - Failed to load snapshot: ~a" c)))))
+  t)
+#+end_src
+
+* Test Suite
+Verifies that the Merkle hash is deterministic and consistent across independent AST ingestions.
+#+begin_src lisp :tangle ../lisp/core-memory.lisp
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-memory-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:memory-suite))
+
+(in-package :passepartout-memory-tests)
+
+(def-suite memory-suite :description "Tests for the Merkle-Tree Memory")
+(in-suite memory-suite)
+
+(test merkle-hash-consistency
+  (let* ((ast1 '(:type :HEADLINE :properties (:ID "test-1" :TITLE "Node 1") :contents nil)))
+    (clrhash passepartout::*memory-store*)
+    (let ((id1 (ingest-ast ast1)))
+      (let ((hash1 (memory-object-hash (memory-object-get id1))))
+        (clrhash passepartout::*memory-store*)
+        (let ((id2 (ingest-ast ast1)))
+          (is (equal hash1 (memory-object-hash (memory-object-get id2)))))))))
+#+end_src

org/core-skills.org

@@ -0,0 +1,441 @@
+#+TITLE: The Skill Engine (skills.lisp)
+#+AUTHOR: Agent
+#+FILETAGS: :org:skills:
+#+STARTUP: content
+#+PROPERTY: header-args:lisp :tangle ../lisp/core-skills.lisp
+
+* Overview: Architectural Intent
+
+The Skill Engine is the dynamic loading and lifecycle manager for all Passepartout skills. It discovers skill files in the skills directory, resolves their dependency order, loads them into jailed packages, and exports their public symbols into the ~passepartout~ package.
+
+** Late-Binding Intelligence
+
+Hardcoding logic into a compiled binary creates a brittle kernel. Every time you add a capability, you must recompile, restart, and re-deploy. Skills solve this by being:
+
+1. **Discovered at boot** — the engine scans a directory for skill files and loads whatever it finds. No registration step needed.
+2. **Dependency-ordered** — skills declare dependencies via ~#+DEPENDS_ON:~ headers. The topological sort ensures they load in the right order.
+3. **Hot-reloadable** — a skill can be replaced at runtime without restarting the daemon. The new version is compiled into a fresh jail package and swapped in.
+4. **Self-documenting** — each skill is a single Org file containing prose, code, metadata, and tests. The "Why" and the "How" are unified.
+
+** The Jailed Package Model
+
+Every skill loads into its own package (e.g., ~PASSEPARTOUT.SKILLS.ORG-SKILL-BOUNCER~). This prevents name conflicts between skills — two skills can define a function called ~process~ without collision, because each lives in its own namespace.
+
+After loading, the engine exports the skill's public symbols into the ~passepartout~ package, making them available to other skills and the org. The export filter uses the skill's short name as a prefix — for example, the BOUNCER skill exports only symbols starting with ~BOUNCER-~.
+
+This is how the "thin org, fat skills" principle works in practice: the org provides the loading infrastructure; the skills provide all the intelligence.
+
+* Implementation
+
+** Package Context
+#+begin_src lisp
+(in-package :passepartout)
+#+end_src
+
+** Utility functions
+
+Helper functions used by the skill loader and other components.
+
+*** Cosine similarity
+
+Computes the cosine similarity between two numeric vectors. Used by the peripheral vision system for semantic relevance scoring — if the agent's current focus has a vector embedding, objects with similar embeddings get promoted to foveal detail.
+
+#+begin_src lisp
+(defun vector-cosine-similarity (v1 v2)
+  "Computes cosine similarity between two vectors."
+  (let* ((len1 (length v1)) (len2 (length v2)))
+    (if (or (zerop len1) (zerop len2))
+        0.0
+        (let* ((dot 0.0d0) (n1 0.0d0) (n2 0.0d0))
+          (dotimes (i (min len1 len2))
+            (let* ((x (coerce (elt v1 i) 'double-float)) (y (coerce (elt v2 i) 'double-float)))
+              (incf dot (* x y)) (incf n1 (* x x)) (incf n2 (* y y))))
+          (if (or (zerop n1) (zerop n2)) 0.0 (/ dot (sqrt (* n1 n2))))))))
+#+end_src
+
+*** Secret masking
+
+Simple mask function and the vault memory hash table. Used by the Bouncer skill and credentials vault to prevent secrets from appearing in logs.
+
+#+begin_src lisp
+(defun VAULT-MASK-STRING (s) (declare (ignore s)) "[MASKED]")
+(defvar *VAULT-MEMORY* (make-hash-table :test 'equal))
+#+end_src
+
+** Skill data structures
+
+The ~skill~ struct holds all metadata about a loaded skill: its name, priority, dependencies, trigger function, probabilistic prompt generator, deterministic gate, and system prompt augmentor. The ~skill-entry~ struct tracks the loading state of each discovered skill file.
+
+#+begin_src lisp
+(defstruct skill name priority dependencies trigger-fn probabilistic-prompt deterministic-fn system-prompt-augment)
+#+end_src
+
+#+begin_src lisp
+(defvar *skill-registry* (make-hash-table :test 'equal))
+#+end_src
+
+#+begin_src lisp
+(defvar *skill-catalog* (make-hash-table :test 'equal)
+  "Tracks all discovered skill files and their loading state.")
+#+end_src
+
+#+begin_src lisp
+(defstruct skill-entry filename (status :discovered) error-log (load-time 0))
+#+end_src
+
+** Skill discovery (skill-triggered-find)
+
+Iterates the registry and returns the highest-priority skill whose trigger function matches the current context. Only skills with a probabilistic prompt are considered (purely deterministic skills don't need LLM attention).
+
+This is how the system determines which skill "owns" the current user input. For example, if the REPL skill's trigger matches the input, the REPL skill provides the prompt template that shapes how the LLM responds.
+
+#+begin_src lisp
+(defun skill-triggered-find (context)
+  "Returns the highest priority skill whose trigger matches context."
+  (let ((triggered nil))
+    (maphash (lambda (name skill) 
+               (declare (ignore name)) 
+               (when (and (skill-probabilistic-prompt skill)
+                          (ignore-errors (funcall (skill-trigger-fn skill) context)))
+                 (push skill triggered))) 
+              *skill-registry*)
+    (first (sort triggered #'> :key #'skill-priority))))
+#+end_src
+
+** Skill registration macro (defskill)
+
+The primary API for skills. Each skill file calls this once to register itself. The macro creates a ~skill~ struct and stores it in ~*skill-registry*~ keyed by the skill's name.
+
+The ~:system-prompt-augment~ slot is optional. If provided, it's a function that receives the context and returns a string to append to the LLM's system prompt. This allows skills to inject domain-specific instructions into every reasoning cycle.
+
+#+begin_src lisp
+(defmacro defskill (name &key priority dependencies trigger probabilistic deterministic system-prompt-augment)
+  "Registers a new skill. NAME is a keyword. TRIGGER is a function (context) → bool."
+  `(setf (gethash (string-downcase (string ,name)) *skill-registry*)
+         (make-skill :name (string-downcase (string ,name)) 
+                    :priority (or ,priority 10) 
+                    :dependencies ',dependencies
+                    :trigger-fn ,trigger 
+                    :probabilistic-prompt ,probabilistic 
+                    :deterministic-fn ,deterministic
+                    :system-prompt-augment ,system-prompt-augment)))
+#+end_src
+
+** Dependency resolution (skill-dependencies-resolve)
+
+Recursively resolves all transitive dependencies for a given skill, returning an ordered list. Uses a standard graph traversal with a ~seen~ set to prevent infinite recursion from circular dependencies.
+
+#+begin_src lisp
+(defun skill-dependencies-resolve (skill-name)
+  "Resolves transitive dependencies. Returns list of skill names in dependency order."
+  (let ((resolved nil) (seen nil))
+    (labels ((visit (name) 
+               (unless (member name seen :test #'equal) 
+                 (push name seen)
+                 (let ((skill (gethash (string-downcase (string name)) *skill-registry*)))
+                   (when skill 
+                     (dolist (dep (skill-dependencies skill)) (visit dep))))
+                 (push name resolved))))
+      (visit skill-name) 
+      (nreverse resolved))))
+#+end_src
+
+** Skill File Analysis (skill-metadata-parse)
+
+Extracts the ~:ID~ and ~#+DEPENDS_ON:~ declarations from a skill's Org file. Used by the topological sorter to order skills correctly.
+
+#+begin_src lisp
+(defun skill-metadata-parse (filepath)
+  "Extracts ID and DEPENDS_ON tags from org file."
+  (let ((dependencies nil) (id nil) (content (uiop:read-file-string filepath)))
+    (let ((id-start (search ":ID:" content)))
+      (when id-start
+        (let ((id-end (position #\Newline content :start id-start)))
+          (when id-end (setf id (string-trim " " (subseq content (+ id-start 4) id-end)))))))
+    (let ((pos 0))
+      (loop while (setf pos (search "#+DEPENDS_ON:" content :start2 pos))
+            do (let ((end (position #\Newline content :start pos)))
+              (when end
+                (let ((line (string-trim " " (subseq content (+ pos 13) end))))
+                  (dolist (d (uiop:split-string line :separator '(#\Space #\Tab)))
+                    (unless (string= d "") (push d dependencies))))
+                (setf pos end)))))
+    (values id (reverse dependencies))))
+#+end_src
+
+** Dependency Resolution (skill-topological-sort)
+
+Returns a list of skill filepaths sorted by dependency order. Uses Kahn's algorithm: collect all files, build an adjacency graph from ~#+DEPENDS_ON:~ declarations, and topologically sort them. Skills with no dependencies are sorted alphabetically.
+
+Both ~.org~ and ~.lisp~ files are included. For each skill, the ~.org~ file supplies the dependency metadata; if a ~.lisp~ file exists, it's loaded instead of tangling from the ~.org~ at load time.
+
+#+begin_src lisp
+(defun skill-topological-sort (skills-dir)
+  "Returns a list of skill filepaths sorted by dependency."
+  (let* ((org-files (uiop:directory-files skills-dir "*.org"))
+         (lisp-files (uiop:directory-files skills-dir "*.lisp"))
+         (all-files (append org-files lisp-files))
+         (files (remove-if (lambda (f)
+                             (let ((n (pathname-name f)))
+                               (or (string= n "core-defpackage")
+                                   (string= n "core-skills")
+                                   (string= n "core-communication")
+                                   (string= n "core-memory")
+                                   (string= n "core-context")
+                                   (string= n "core-loop-perceive")
+                                   (string= n "core-loop-reason")
+                                   (string= n "core-loop-act")
+                                   (string= n "core-loop")
+                                   (string= n "core-manifest"))))
+                           all-files))
+        (adj (make-hash-table :test 'equal))
+        (name-to-file (make-hash-table :test 'equal))
+        (id-to-file (make-hash-table :test 'equal))
+        (result nil)
+        (visited (make-hash-table :test 'equal))
+        (stack (make-hash-table :test 'equal)))
+    (dolist (file files)
+      (let ((filename (pathname-name file)))
+        (if (uiop:string-suffix-p (namestring file) ".lisp")
+            (progn
+              (setf (gethash (string-downcase filename) name-to-file) file)
+              (unless (gethash (string-downcase filename) adj)
+                (setf (gethash (string-downcase filename) adj) nil)))
+            (multiple-value-bind (id deps) (skill-metadata-parse file)
+              (setf (gethash (string-downcase filename) name-to-file) file)
+              (when id (setf (gethash (string-downcase id) id-to-file) file))
+              (setf (gethash (string-downcase filename) adj) deps)))))
+    (labels ((visit (file)
+               (let* ((filename (pathname-name file))
+                      (node-key (string-downcase filename)))
+                 (unless (gethash node-key visited)
+                   (setf (gethash node-key stack) t)
+                   (dolist (dep (gethash node-key adj))
+                     (let* ((is-id-p (uiop:string-prefix-p "id:" (string-downcase dep)))
+                            (dep-key (string-downcase (if is-id-p (subseq dep 3) dep)))
+                            (dep-file (if is-id-p 
+                                          (gethash dep-key id-to-file)
+                                          (or (gethash dep-key id-to-file)
+                                              (gethash dep-key name-to-file)))))
+                       (when dep-file
+                         (let ((dep-filename (pathname-name dep-file)))
+                           (if (gethash (string-downcase dep-filename) stack)
+                               (error "Circular dependency detected")
+                               (visit dep-file))))))
+                   (setf (gethash node-key stack) nil)
+                   (setf (gethash node-key visited) t)
+                   (push file result)))))
+      (let ((filenames (sort (mapcar #'pathname-name files) #'string<)))
+        (dolist (name filenames)
+          (let ((file (gethash (string-downcase name) name-to-file)))
+            (when file (visit file)))))
+      (nreverse result))))
+#+end_src
+
+** Jailed Loading (skill-load-from-org)
+
+The primary skill loader. Given a path to an ~.org~ file:
+
+1. Reads the Org file and collects all ~#+begin_src lisp~ blocks (excluding test blocks and blocks with ~:tangle no~)
+2. Validates the Lisp syntax before loading
+3. Creates a jailed package named after the skill (e.g., ~PASSEPARTOUT.SKILLS.ORG-SKILL-BOUNCER~) with ~:use :passepartout~
+4. Evaluates the collected Lisp forms in that package
+5. Scans the package for symbols matching the skill's name prefix and exports them to the ~passepartout~ package
+
+The validation step is critical: invalid Lisp in an org block would crash the loader. The validator uses ~read~ with ~*read-eval*~ bound to nil to safely detect syntax errors without evaluating.
+
+#+begin_src lisp
+(defun lisp-syntax-validate (code-string)
+  "Checks if a string contains valid Common Lisp forms."
+  (handler-case
+      (let ((*read-eval* nil))
+        (with-input-from-string (s (format nil "(progn ~a)" code-string))
+          (loop for form = (read s nil :eof) until (eq form :eof)))
+        (values t nil))
+    (error (c) (values nil (format nil "~a" c)))))
+
+(defun skill-package-forms-strip (code-string)
+  "Removes in-package forms so symbols get defined in skill package."
+  (let ((lines (uiop:split-string code-string :separator '(#\Newline)))
+        (result ""))
+    (dolist (line lines)
+      (let ((trimmed (string-trim '(#\Space #\Tab) line)))
+        (unless (uiop:string-prefix-p "(in-package" trimmed)
+          (setf result (concatenate 'string result line (string #\Newline))))))
+    result))
+
+(defun tangle-target-extract (line)
+  "Extracts the value of the :tangle header."
+  (let ((pos (search ":tangle" line)))
+    (when pos
+      (let ((rest (string-tirm '(#\Space #\Tab) (subseq line (+ pos 7)))))
+        (let ((end (position #\Space rest)))
+          (if end (subseq rest 0 end) rest))))))
+
+(defun load-skill-from-org (filepath)
+  "Parses and evaluates Lisp blocks from an Org file."
+  (let* ((skill-base-name (pathname-name filepath))
+         (entry (or (gethash skill-base-name *skill-catalog*) (setf (gethash skill-base-name *skill-catalog*) (make-skill-entry :filename skill-base-name)))))
+    (setf (skill-entry-status entry) :loading)
+    (handler-case
+        (let* ((content (uiop:read-file-string filepath))
+               (lines (uiop:split-string content :separator '(#\Newline)))
+               (in-lisp-block nil) (collect-this-block nil) (lisp-code "")
+               (pkg-name (intern (string-upcase (format nil "PASSEPARTOUT.SKILLS.~a" skill-base-name)) :keyword)))
+          (dolist (line lines)
+            (let ((clean-line (string-trim '(#\Space #\Tab #\Return) line)))
+              (cond
+                ((uiop:string-prefix-p "#+begin_src lisp" clean-line)
+                 (setf in-lisp-block t)
+                 (let ((target (tangle-target-extract clean-line)))
+                   (setf collect-this-block (or (null target)
+                                                (and (not (search "no" target))
+                                                     (not (search "/tests" target)))))))
+                ((uiop:string-prefix-p "#+end_src" clean-line)
+                 (setf in-lisp-block nil) (setf collect-this-block nil))
+                ((and in-lisp-block collect-this-block)
+                 (unless (or (uiop:string-prefix-p ":PROPERTIES:" (string-upcase clean-line))
+                              (uiop:string-prefix-p ":END:" (string-upcase clean-line))
+                              (uiop:string-prefix-p ":ID:" (string-upcase clean-line)))
+                   (setf lisp-code (concatenate 'string lisp-code line (string #\Newline))))))))
+          (if (= (length lisp-code) 0)
+              (setf (skill-entry-status entry) :ready)
+              (progn
+                (multiple-value-bind (valid-p err) (lisp-syntax-validate lisp-code)
+                  (unless valid-p (error err)))
+                (unless (find-package pkg-name)
+                  (let ((new-pkg (make-package pkg-name :use '(:cl)))) (use-package :passepartout new-pkg)))
+                (let ((*read-eval* nil) (*package* (find-package pkg-name)))
+                  (log-message "LOADER: Evaluating code for '~a' in package ~a" skill-base-name (package-name *package*))
+                  (eval (read-from-string (format nil "(progn ~a)" lisp-code))))
+
+                (let* ((target-pkg (find-package :passepartout))
+                       (raw-name (string-upcase skill-base-name))
+                       (short-name (if (uiop:string-prefix-p "ORG-SKILL-" raw-name)
+                                       (subseq raw-name 10)
+                                       raw-name)))
+                  (log-message "LOADER: Scanning package ~a for symbols to export..." (package-name (find-package pkg-name)))
+                  (do-symbols (sym (find-package pkg-name))
+                    (when (eq (symbol-package sym) (find-package pkg-name))
+                      (let ((sn (symbol-name sym)))
+                        (when (or (uiop:string-prefix-p raw-name sn)
+                                  (uiop:string-prefix-p short-name sn)
+                                  (string-equal sn "DIAGNOSTICS-MAIN")
+                                  (string-equal sn "DIAGNOSTICS-RUN-ALL")
+                                  (string-equal sn "SETUP-WIZARD-RUN"))
+                          (log-message "LOADER: Exporting ~a to :PASSEPARTOUT" sn)
+                          (let ((existing (find-symbol sn target-pkg)))
+                            (when (and existing (not (eq existing sym)))
+                              (unintern existing target-pkg)))
+                          (import sym target-pkg)
+                          (export sym target-pkg))))))
+
+                (setf (skill-entry-status entry) :ready)))
+          t)
+      (error (c)
+        (log-message "LOADER ERROR in skill '~a': ~a" skill-base-name c)
+        (setf (skill-entry-status entry) :failed) nil))))
+#+end_src
+
+** Loading from Pre-Tangled Lisp (skill-load-from-lisp)
+
+Loads a pre-tangled ~.lisp~ file directly, without parsing the Org source. This is faster than ~load-skill-from-org~ because it skips the block extraction and syntax validation (the Lisp was already validated when tangled).
+
+The same jailed package and symbol export process applies.
+
+#+begin_src lisp
+(defun load-skill-from-lisp (filepath)
+  "Loads a .lisp skill file directly, filtering out in-package forms."
+  (let* ((skill-base-name (pathname-name filepath))
+         (entry (or (gethash skill-base-name *skill-catalog*) (setf (gethash skill-base-name *skill-catalog*) (make-skill-entry :filename skill-base-name)))))
+    (setf (skill-entry-status entry) :loading)
+    (handler-case
+        (let* ((content (skill-package-forms-strip (uiop:read-file-string filepath)))
+               (pkg-name (intern (string-upcase (format nil "PASSEPARTOUT.SKILLS.~a" skill-base-name)) :keyword)))
+          (multiple-value-bind (valid-p err) (lisp-syntax-validate content)
+            (unless valid-p (error err)))
+          (unless (find-package pkg-name)
+            (let ((new-pkg (make-package pkg-name :use '(:cl)))) (use-package :passepartout new-pkg)))
+          (let ((*read-eval* nil) (*package* (find-package pkg-name)))
+            (log-message "LOADER: Loading .lisp skill '~a' in package ~a" skill-base-name (package-name *package*))
+            (with-input-from-string (s content)
+              (loop for form = (read s nil :eof) until (eq form :eof)
+                    do (handler-case (eval form)
+                         (error (c) (log-message "LOADER WARNING in '~a': ~a" skill-base-name c))))))
+          (let* ((target-pkg (find-package :passepartout))
+                 (raw-name (string-upcase skill-base-name))
+                 (short-name (if (uiop:string-prefix-p "ORG-SKILL-" raw-name)
+                                 (subseq raw-name 10)
+                                 raw-name)))
+            (log-message "LOADER: Scanning package ~a for symbols to export..." (package-name (find-package pkg-name)))
+            (do-symbols (sym (find-package pkg-name))
+              (when (eq (symbol-package sym) (find-package pkg-name))
+                (let ((sn (symbol-name sym)))
+                  (when (or (uiop:string-prefix-p raw-name sn)
+                            (uiop:string-prefix-p short-name sn)
+                            (string-equal sn "DIAGNOSTICS-MAIN")
+                                  (string-equal sn "DIAGNOSTICS-RUN-ALL")
+                            (string-equal sn "SETUP-WIZARD-RUN"))
+                    (log-message "LOADER: Exporting ~a to :PASSEPARTOUT" sn)
+                    (let ((existing (find-symbol sn target-pkg)))
+                      (when (and existing (not (eq existing sym)))
+                        (unintern existing target-pkg)))
+                    (import sym target-pkg)
+                    (export sym target-pkg))))))
+          (setf (skill-entry-status entry) :ready))
+      (error (c)
+        (log-message "LOADER ERROR in skill '~a': ~a" skill-base-name c)
+        (setf (skill-entry-status entry) :failed) nil))))
+#+end_src
+
+** Initialize (skill-initialize-all)
+
+Boot-time entry point. Scans the skills directory, topologically sorts the files, and loads each one. Called from ~main~ in the metabolic loop and from the REPL for hot-reload.
+
+Skills are loaded from ~$PASSEPARTOUT_DATA_DIR/lisp/~ where both core and skill
+files live after tangling. The org source files live in ~org/~.
+
+#+begin_src lisp
+(defun skill-initialize-all ()
+  "Initializes all skills from the XDG data directory."
+  (let* ((data-dir (uiop:ensure-directory-pathname (or (uiop:getenv "PASSEPARTOUT_DATA_DIR") (namestring (merge-pathnames ".local/share/passepartout/" (user-homedir-pathname))))))
+         (skills-dir (merge-pathnames "lisp/" (uiop:ensure-directory-pathname data-dir))))
+    (unless (uiop:directory-exists-p skills-dir) (return-from skill-initialize-all nil))
+    (let ((sorted-files (skill-topological-sort skills-dir)))
+      (log-message "LOADER: Initializing ~a skills..." (length sorted-files))
+      (dolist (file sorted-files)
+        (if (uiop:string-suffix-p (namestring file) ".lisp")
+            (load-skill-from-lisp file)
+            (load-skill-from-org file)))
+      (log-message "LOADER: Boot Complete."))))
+#+end_src
+
+* Test Suite
+Verifies that the topological sorter correctly orders skills by their ~#+DEPENDS_ON:~ declarations.
+#+begin_src lisp :tangle ../tests/boot-sequence-tests.lisp
+(eval-when (:compile-toplevel :load-toplevel :execute)
+  (ql:quickload :fiveam :silent t))
+
+(defpackage :passepartout-boot-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:boot-suite))
+
+(in-package :passepartout-boot-tests)
+
+(def-suite boot-suite :description "Verification of the Skill Engine loader")
+(in-suite boot-suite)
+
+(test test-topological-sort-basic
+  (let ((tmp-dir "/tmp/passepartout-boot-test/"))
+    (uiop:ensure-all-directories-exist (list tmp-dir))
+    (with-open-file (out (merge-pathnames "org-skill-a.org" tmp-dir) :direction :output :if-exists :supersede)
+      (format out "#+DEPENDS_ON: skill-b-id~%"))
+    (with-open-file (out (merge-pathnames "org-skill-b.org" tmp-dir) :direction :output :if-exists :supersede)
+      (format out ":PROPERTIES:~%:ID: skill-b-id~%:END:~%"))
+    (unwind-protect
+         (let ((sorted (passepartout::skill-topological-sort tmp-dir)))
+           (let ((pos-a (position "org-skill-a" sorted :key #'pathname-name :test #'string-equal))
+                 (pos-b (position "org-skill-b" sorted :key #'pathname-name :test #'string-equal)))
+             (is (< pos-b pos-a))))
+       (uiop:delete-directory-tree (uiop:ensure-directory-pathname tmp-dir) :validate t))))
+#+end_src

org/gateway-cli.org

@@ -1,21 +1,16 @@
 #+TITLE: SKILL: CLI Gateway (org-skill-cli-gateway.org)
 #+AUTHOR: Agent
 #+FILETAGS: :skill:gateway:cli:
-#+PROPERTY: header-args:lisp :tangle org-skill-cli-gateway.lisp
+#+PROPERTY: header-args:lisp :tangle ../lisp/gateway-cli.lisp
 
 * Overview
-The *CLI Gateway* provides a command-line interface for interacting with the OpenCortex daemon.
+The CLI Gateway is the simplest interface to Passepartout — raw stdin/stdout over TCP. It connects to the daemon's framed protocol and translates between terminal input/output and the plist-based communication format. No TUI, no ncurses, no dependencies beyond a TCP socket. Every other gateway (TUI, Emacs, Telegram) builds on this same protocol.
 
 * Implementation
 
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
 ** CLI Command Handling
 #+begin_src lisp
-(defun cli-process-input (text)
+(defun gateway-cli-input (text)
   "Processes raw text from the command line."
   (inject-stimulus (list :type :EVENT 
                          :payload (list :sensor :user-input :text text) 
@@ -24,7 +19,7 @@ The *CLI Gateway* provides a command-line interface for interacting with the Ope
 
 ** Skill Registration
 #+begin_src lisp
-(defskill :skill-cli-gateway
+(defskill :passepartout-gateway-cli
   :priority 100
   :trigger (lambda (ctx) (eq (getf (getf ctx :meta) :source) :CLI))
   :deterministic (lambda (action ctx) (declare (ignore ctx)) action))

org/gateway-llm.org

@@ -1,21 +1,16 @@
 #+TITLE: SKILL: LLM Gateway (org-skill-llm-gateway.org)
 #+AUTHOR: Agent
 #+FILETAGS: :skill:llm:gateway:
-#+PROPERTY: header-args:lisp :tangle org-skill-llm-gateway.lisp
+#+PROPERTY: header-args:lisp :tangle ../lisp/gateway-llm.lisp
 
 * Overview
-The *LLM Gateway* skill provides a unified interface for interacting with multiple Large Language Model providers.
+The LLM Gateway dispatches inference requests to the registered probabilistic backends. It receives a prompt and system prompt, looks up the provider's registered function from ~*probabilistic-backends*~, calls it with the given model, and returns the result. This is the thin routing layer that sits between the reason pipeline and the provider-specific implementations in the unified-llm-backend skill.
 
 * Implementation
 
-** Package Context
+** Request Execution (gateway-llm-request)
 #+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Request Execution (execute-llm-request)
-#+begin_src lisp
-(defun execute-llm-request (&key prompt system-prompt (provider :ollama) model)
+(defun gateway-llm-request (&key prompt system-prompt (provider :ollama) model)
   "Central dispatcher for LLM requests."
   (let ((backend (gethash provider *probabilistic-backends*)))
     (if backend
@@ -28,22 +23,22 @@ The *LLM Gateway* skill provides a unified interface for interacting with multip
 
 ** Skill Registration
 #+begin_src lisp
-(defskill :skill-llm-gateway
+(defskill :passepartout-gateway-llm
   :priority 100
   :trigger (lambda (ctx) (getf ctx :user-input))
   :deterministic (lambda (action ctx) (declare (ignore ctx)) action))
 #+end_src
 
 * Test Suite
-#+begin_src lisp :tangle ../tests/llm-gateway-tests.lisp
+#+begin_src lisp :tangle ../lisp/gateway-llm.lisp
 (eval-when (:compile-toplevel :load-toplevel :execute)
   (ql:quickload :fiveam :silent t))
 
-(defpackage :opencortex-llm-gateway-tests
-  (:use :cl :opencortex)
+(defpackage :passepartout-llm-gateway-tests
+  (:use :cl :passepartout)
   (:export #:llm-gateway-suite))
 
-(in-package :opencortex-llm-gateway-tests)
+(in-package :passepartout-llm-gateway-tests)
 
 (fiveam:def-suite llm-gateway-suite :description "Tests for the LLM Gateway skill")
 (fiveam:in-suite llm-gateway-suite)
@@ -54,8 +49,8 @@ The *LLM Gateway* skill provides a unified interface for interacting with multip
     (unwind-protect
          (progn
            (setf (uiop:getenv "OLLAMA_HOST") "localhost:1")
-           (let ((fn (or (find-symbol "EXECUTE-LLM-REQUEST" :opencortex.skills.org-skill-llm-gateway)
-                         (find-symbol "EXECUTE-LLM-REQUEST" :opencortex))))
+           (let ((fn (or (find-symbol "EXECUTE-LLM-REQUEST" :passepartout.gateway-llm)
+                         (find-symbol "EXECUTE-LLM-REQUEST" :passepartout))))
              (if fn
                  (let ((result (funcall fn :prompt "hello" :provider :ollama)))
                    (fiveam:is (eq (getf result :status) :error))

org/gateway-manager.org

@@ -0,0 +1,298 @@
+#+TITLE: SKILL: Gateway Manager (org-skill-gateway-manager.org)
+#+AUTHOR: Agent
+#+FILETAGS: :skill:gateway:manager:
+#+PROPERTY: header-args:lisp :tangle ../lisp/gateway-manager.lisp
+
+* Architectural Intent
+
+The Gateway Manager is the unified interface for all external messaging platforms. It handles Telegram, Signal, and any future gateway through a common pattern: a registry of poll/send function pairs, a configuration hash table for tokens and intervals, and a background thread per gateway that polls for new messages.
+
+Each gateway follows the same lifecycle:
+1. **Register** — the gateway's poll and send functions are registered in ~*gateway-registry*~
+2. **Link** — the user provides a token; it's stored in the vault and a polling thread is started
+3. **Poll** — the thread calls the poll function on an interval, injecting received messages into the pipeline
+4. **Unlink** — the thread is destroyed, the config is removed
+5. **Act** — when the agent needs to send a message, it dispatches to the gateway's send function via the generic actuator mechanism
+
+* Implementation
+
+** Platform state — configs
+Storage for active gateway connections: tokens, polling threads, and intervals.
+#+begin_src lisp
+(defvar *gateway-configs* (make-hash-table :test 'equal)
+  "Maps platform name → plist (:token :thread :interval :enabled)")
+#+end_src
+
+** Platform state — registry
+Registration of available gateway implementations: each platform registers its poll and send functions here.
+#+begin_src lisp
+(defvar *gateway-registry* (make-hash-table :test 'equal)
+  "Maps platform name → plist (:poll-fn :send-fn :default-interval)")
+#+end_src
+
+** Telegram Implementation
+#+begin_src lisp
+(defun telegram-get-token ()
+  (vault-get-secret :telegram))
+
+(defun telegram-poll ()
+  "Polls Telegram for new messages and injects them into the harness."
+  (let* ((token (telegram-get-token)))
+    (when token
+      (let* ((last-id (getf (gethash "telegram" *gateway-configs*) :last-update-id 0))
+             (url (format nil "https://api.telegram.org/bot~a/getUpdates?offset=~a"
+                          token (1+ last-id))))
+        (handler-case
+            (let* ((response (dex:get url))
+                   (json (cl-json:decode-json-from-string response))
+                   (updates (cdr (assoc :result json))))
+              (dolist (update updates)
+                (let* ((update-id (cdr (assoc :update--id update)))
+                       (message (cdr (assoc :message update)))
+                       (chat (cdr (assoc :chat message)))
+                       (chat-id (cdr (assoc :id chat)))
+                       (text (cdr (assoc :text message))))
+                  (setf (getf (gethash "telegram" *gateway-configs*) :last-update-id) update-id)
+                  (when (and text chat-id)
+                    (log-message "TELEGRAM: Received message from ~a" chat-id)
+                    (inject-stimulus
+                     (list :type :EVENT
+                           :meta (list :source :telegram :chat-id (format nil "~a" chat-id))
+                           :payload (list :sensor :user-input :text text)))))))
+          (error (c) (log-message "TELEGRAM POLL ERROR: ~a" c))))))
+
+(defun telegram-send (action context)
+  "Sends a message via Telegram."
+  (declare (ignore context))
+  (let* ((payload (getf action :payload))
+         (meta (getf action :meta))
+         (chat-id (or (getf meta :chat-id) (getf payload :chat-id) (getf action :chat-id)))
+         (text (or (getf payload :text) (getf action :text)))
+         (token (telegram-get-token)))
+    (when (and token chat-id text)
+      (log-message "TELEGRAM: Sending message to ~a..." chat-id)
+      (handler-case
+          (let ((url (format nil "https://api.telegram.org/bot~a/sendMessage" token)))
+            (dex:post url
+                      :headers '(("Content-Type" . "application/json"))
+                      :content (cl-json:encode-json-to-string
+                                `((chat_id . ,chat-id) (text . ,text)))))
+        (error (c) (log-message "TELEGRAM ERROR: ~a" c))))))
+#+end_src
+
+** Signal Implementation
+#+begin_src lisp
+(defun signal-get-account ()
+  (vault-get-secret :signal))
+
+(defun signal-poll ()
+  "Polls Signal for new messages and injects them into the harness."
+  (let ((account (signal-get-account)))
+    (when account
+      (handler-case
+          (let* ((output (uiop:run-program (list "signal-cli" "-u" account "receive" "--json")
+                                            :output :string :error-output :string :ignore-error-status t))
+                 (lines (cl-ppcre:split "\\n" output)))
+            (dolist (line lines)
+              (when (and line (> (length line) 0))
+                (let* ((json (ignore-errors (cl-json:decode-json-from-string line)))
+                       (envelope (cdr (assoc :envelope json)))
+                       (source (cdr (assoc :source envelope)))
+                       (data-message (cdr (assoc :data-message envelope)))
+                       (text (cdr (assoc :message data-message))))
+                  (when (and source text)
+                    (log-message "SIGNAL: Received message from ~a" source)
+                    (inject-stimulus
+                     (list :type :EVENT
+                           :meta (list :source :signal :chat-id source)
+                           :payload (list :sensor :user-input :text text))))))))
+        (error (c) (log-message "SIGNAL POLL ERROR: ~a" c))))))
+
+(defun signal-send (action context)
+  "Sends a message via Signal."
+  (declare (ignore context))
+  (let* ((payload (getf action :payload))
+         (meta (getf action :meta))
+         (chat-id (or (getf meta :chat-id) (getf payload :chat-id) (getf action :chat-id)))
+         (text (or (getf payload :text) (getf action :text)))
+         (account (signal-get-account)))
+    (when (and account chat-id text)
+      (log-message "SIGNAL: Sending message to ~a..." chat-id)
+      (handler-case
+          (uiop:run-program (list "signal-cli" "-u" account "send" "-m" text chat-id)
+                            :output :string :error-output :string)
+        (error (c) (log-message "SIGNAL ERROR: ~a" c))))))
+#+end_src
+
+** Gateway Registry Initialization
+#+begin_src lisp
+(defun gateway-registry-initialize ()
+  "Registers all built-in gateway handlers."
+  (setf (gethash "telegram" *gateway-registry*)
+        (list :poll-fn #'telegram-poll
+              :send-fn #'telegram-send
+              :default-interval 3))
+  (setf (gethash "signal" *gateway-registry*)
+        (list :poll-fn #'signal-poll
+              :send-fn #'signal-send
+              :default-interval 5)))
+#+end_src
+
+** Core gateway functions
+
+*** Configuration check (gateway-configured-p)
+Returns T if a platform has a stored token in ~*gateway-configs*~.
+#+begin_src lisp
+(defun gateway-configured-p (platform)
+  "Returns T if a platform has a stored token."
+  (let ((config (gethash platform *gateway-configs*)))
+    (and config (getf config :token))))
+#+end_src
+
+*** Active check (gateway-active-p)
+Returns T if a platform's polling thread is alive.
+#+begin_src lisp
+(defun gateway-active-p (platform)
+  "Returns T if a platform's polling thread is alive."
+  (let ((config (gethash platform *gateway-configs*)))
+    (and config
+         (getf config :thread)
+         (bt:thread-alive-p (getf config :thread)))))
+#+end_src
+
+*** Link a gateway (gateway-link)
+The main entry point for linking. Validates the registry entry, stores the token in the vault, starts the polling thread, and updates the config.
+#+begin_src lisp
+(defun gateway-link (platform token)
+  "Links a platform with a token and starts polling."
+  (let ((platform-lc (string-downcase platform)))
+    (unless (gethash platform-lc *gateway-registry*)
+      (error "Unknown platform: ~a. Available: ~{~a~^, ~}"
+             platform (loop for k being the hash-keys of *gateway-registry* collect k)))
+    (when (or (null token) (zerop (length token)))
+      (error "Token cannot be empty"))
+    (log-message "GATEWAY: Linking to ~a..." platform-lc)
+    (gateway-unlink platform-lc)
+    (let* ((registry-entry (gethash platform-lc *gateway-registry*))
+           (interval (or (getf registry-entry :default-interval) 5)))
+      (setf (gethash platform-lc *gateway-configs*)
+            (list :token token :interval interval :enabled t))
+      (vault-set-secret (intern (string-upcase platform-lc) :keyword) token)
+      (gateway-start platform-lc)
+      (log-message "GATEWAY: Successfully linked ~a" platform-lc)
+      (format t "Successfully linked ~a gateway. Token stored securely.~%" platform-lc)
+      t)))
+#+end_src
+
+*** Unlink a gateway (gateway-unlink)
+Stops the polling thread and removes the config entry.
+#+begin_src lisp
+(defun gateway-unlink (platform)
+  "Unlinks a platform and stops its polling thread."
+  (let ((platform-lc (string-downcase platform)))
+    (gateway-stop platform-lc)
+    (remhash platform-lc *gateway-configs*)
+    (log-message "GATEWAY: Unlinked ~a" platform-lc)
+    (format t "Successfully unlinked ~a gateway.~%" platform-lc)
+    t))
+#+end_src
+
+*** Start polling (gateway-start)
+Creates a background thread that calls the platform's poll function on an interval. The thread checks the ~:enabled~ flag on each cycle so it can be stopped cleanly via ~gateway-stop~.
+#+begin_src lisp
+(defun gateway-start (platform)
+  "Starts the polling thread for a linked gateway."
+  (let ((platform-lc (string-downcase platform)))
+    (let ((config (gethash platform-lc *gateway-configs*)))
+      (when (and config (getf config :enabled) (not (gateway-active-p platform-lc)))
+        (let ((poll-fn (getf (gethash platform-lc *gateway-registry*) :poll-fn)))
+          (when poll-fn
+            (let ((interval (getf config :interval)))
+              (setf (getf config :thread)
+                    (bt:make-thread
+                     (lambda ()
+                       (loop
+                         (when (getf (gethash platform-lc *gateway-configs*) :enabled)
+                           (funcall poll-fn))
+                         (sleep interval)))
+                     :name (format nil "passepartout-~a-gateway" platform-lc)))
+              (log-message "GATEWAY: Started ~a polling (interval: ~as)" platform-lc interval)))))))))
+#+end_src
+
+*** Stop polling (gateway-stop)
+Destroys the polling thread and nulls the thread reference.
+#+begin_src lisp
+(defun gateway-stop (platform)
+  "Stops the polling thread for a gateway."
+  (let ((platform-lc (string-downcase platform)))
+    (let ((config (gethash platform-lc *gateway-configs*)))
+      (when (and config (getf config :thread))
+        (when (bt:thread-alive-p (getf config :thread))
+          (log-message "GATEWAY: Stopping ~a polling thread" platform-lc)
+          (bt:destroy-thread (getf config :thread))))
+      (setf (getf config :thread) nil))))
+#+end_src
+
+*** List gateways (gateway-list)
+Returns a list of plists, one per registered platform, with :platform, :configured, and :active keys.
+#+begin_src lisp
+(defun gateway-list ()
+  "Returns a list of all gateways with their status."
+  (loop for platform being the hash-keys of *gateway-registry*
+        collect (let ((configured (gateway-configured-p platform))
+                      (active (gateway-active-p platform)))
+                  (list :platform platform
+                        :configured configured
+                        :active active))))
+#+end_src
+
+*** Print gateways (gateway-list-print)
+Formats ~gateway-list~ for display in the CLI.
+#+begin_src lisp
+(defun gateway-list-print ()
+  "Prints a formatted table of gateways."
+  (format t "~%")
+  (format t "  ~20@A ~12@A ~10@A~%" "PLATFORM" "CONFIGURED" "STATUS")
+  (dolist (gw (gateway-list))
+    (format t "  ~20@A ~12@A ~10@A~%"
+            (getf gw :platform)
+            (if (getf gw :configured) "yes" "no")
+            (cond
+              ((getf gw :active) "ACTIVE")
+              ((getf gw :configured) "stopped")
+              (t "not linked"))))
+  (format t "~%"))
+#+end_src
+
+*** Start all configured gateways (gateway-start-all)
+Called during boot to start all gateways that have tokens stored in their configs.
+#+begin_src lisp
+(defun gateway-start-all ()
+  "Called at boot to start all configured gateways."
+  (dolist (config (loop for platform being the hash-keys of *gateway-configs*
+                       collect (list platform (gethash platform *gateway-configs*))))
+    (destructuring-bind (platform config) config
+      (when (and (getf config :enabled) (not (gateway-active-p platform)))
+        (gateway-start platform)))))
+#+end_src
+
+** Actuator Registration
+Register :telegram and :signal as actuators for outbound messages.
+#+begin_src lisp
+(register-actuator :telegram #'telegram-send)
+(register-actuator :signal #'signal-send)
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-gateway-manager
+  :priority 150
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+#+end_src
+
+** Initialization
+Initialize registry and start configured gateways on skill load.
+#+begin_src lisp
+(gateway-registry-initialize)
+(gateway-start-all)
+#+end_src

org/gateway-provider.org

@@ -0,0 +1,120 @@
+#+TITLE: SKILL: Unified LLM Backend (org-skill-unified-llm-backend.org)
+#+AUTHOR: Agent
+#+FILETAGS: :skill:llm:backend:openai-compatible:
+#+PROPERTY: header-args:lisp :tangle ../lisp/gateway-provider.lisp
+
+* Architectural Intent
+
+The Unified LLM Backend provides a single OpenAI-compatible API client that works with any provider supporting the ~/v1/chat/completions~ endpoint. This covers local engines (Ollama, vLLM, LM Studio, llama.cpp) and cloud providers (OpenRouter, OpenAI, Anthropic, Groq, Gemini, DeepSeek, NVIDIA NIM).
+
+The key design decision: **one client, many configurations**. Instead of having separate skills for each provider (org-skill-ollama, org-skill-openai, etc.), this single skill holds a configuration table mapping provider keywords to their base URL, API key env var, and default model. The same ~provider-openai-request~ function works for all of them.
+
+Providers are registered automatically at boot based on which API keys are set in the environment. If OPENAI_API_KEY is set, OpenAI is available. If not, it's skipped silently.
+
+Providers are registered automatically based on available environment variables.
+No separate skills per provider — just different base URLs and API keys.
+
+* Implementation
+
+** Provider registry (~*provider-configs*~)
+The authoritative list of supported LLM providers and their configuration: base URL, env var for API key, and default model name.
+#+begin_src lisp
+(defparameter *provider-configs*
+  '((:ollama     . (:base-url nil          :key-env nil           :default-model "llama3"))
+    (:openrouter . (:base-url "https://openrouter.ai/api/v1" :key-env "OPENROUTER_API_KEY" :default-model "openrouter/auto"))
+    (:openai     . (:base-url "https://api.openai.com/v1"    :key-env "OPENAI_API_KEY"     :default-model "gpt-4o-mini"))
+    (:anthropic  . (:base-url "https://api.anthropic.com/v1" :key-env "ANTHROPIC_API_KEY"  :default-model "claude-3-5-sonnet-20241022"))
+    (:groq       . (:base-url "https://api.groq.com/openai/v1" :key-env "GROQ_API_KEY"     :default-model "llama-3.1-70b-versatile"))
+    (:gemini     . (:base-url "https://generativelanguage.googleapis.com/v1beta/openai" :key-env "GEMINI_API_KEY" :default-model "gemini-2.0-flash"))
+    (:deepseek   . (:base-url "https://api.deepseek.com/v1"  :key-env "DEEPSEEK_API_KEY"  :default-model "deepseek-chat"))
+    (:nvidia     . (:base-url "https://integrate.api.nvidia.com/v1" :key-env "NVIDIA_API_KEY" :default-model "meta/llama-3.1-405b-instruct"))))
+#+end_src
+
+** Provider config lookup (provider-config)
+Returns the config plist for a given provider keyword.
+#+begin_src lisp
+(defun provider-config (provider)
+  "Returns the configuration plist for a provider keyword."
+  (cdr (assoc provider *provider-configs*)))
+#+end_src
+
+** Availability check (provider-available-p)
+Returns T if a provider is configured — meaning it either has an API key set, or it is Ollama (always available locally).
+#+begin_src lisp
+(defun provider-available-p (provider)
+  "Checks if a provider is configured. Ollama is always considered available."
+  (let* ((config (provider-config provider))
+         (key-env (getf config :key-env))
+         (base-url (getf config :base-url)))
+    (cond ((eq provider :ollama) t)
+          (key-env (let ((key (uiop:getenv key-env))) (and key (> (length key) 0))))
+          (base-url t))))
+#+end_src
+
+** Unified Request Execution
+#+begin_src lisp
+(defun provider-openai-request (prompt system-prompt &key model (provider :ollama))
+  "Executes a request against any OpenAI-compatible API endpoint."
+  (let* ((config (provider-config provider))
+         (base-url (getf config :base-url))
+         (key-env (getf config :key-env))
+         (default-model (getf config :default-model))
+         (api-key (when key-env (uiop:getenv key-env)))
+         (model-id (or model default-model))
+         (url (if (eq provider :ollama)
+                  (format nil "http://~a/v1/chat/completions" (or (uiop:getenv "OLLAMA_HOST") "localhost:11434"))
+                  (format nil "~a/chat/completions" base-url)))
+         (headers `(("Content-Type" . "application/json")
+                    ,@(when api-key `(("Authorization" . ,(format nil "Bearer ~a" api-key))))
+                    ,@(when (eq provider :openrouter)
+                        `(("HTTP-Referer" . "https://github.com/amrgharbeia/passepartout")
+                          ("X-Title" . "Passepartout")))))
+         (body (cl-json:encode-json-to-string
+                `((model . ,model-id)
+                  (messages . (( (role . "system") (content . ,system-prompt) )
+                               ( (role . "user") (content . ,prompt) )))))))
+    (handler-case
+        (let* ((response (dex:post url :headers headers :content body :connect-timeout 10 :read-timeout 60))
+               (json (cl-json:decode-json-from-string response))
+               (choices (cdr (assoc :choices json)))
+               (first-choice (car choices))
+               (message (cdr (assoc :message first-choice)))
+               (content (cdr (assoc :content message))))
+          (if content
+              (list :status :success :content content)
+              (list :status :error :message (format nil "~a: No content in response (~s)" provider json))))
+      (error (c)
+        (list :status :error :message (format nil "~a Failure: ~a" provider c))))))
+#+end_src
+
+** Dynamic Backend Registration
+#+begin_src lisp
+(defun provider-register-all ()
+  "Scans environment variables and registers all available LLM backends."
+  (dolist (entry *provider-configs*)
+    (let ((provider (car entry)))
+      (when (provider-available-p provider)
+        (log-message "LLM BACKEND: Registering provider ~a" provider)
+        (register-probabilistic-backend provider
+          (lambda (prompt system-prompt &key model)
+            (provider-openai-request prompt system-prompt :model model :provider provider)))))))
+
+(defun provider-cascade-initialize ()
+  "Reads PROVIDER_CASCADE from env and sets *provider-cascade*."
+  (let ((cascade-str (uiop:getenv "PROVIDER_CASCADE")))
+    (if cascade-str
+        (setf *provider-cascade*
+              (mapcar (lambda (s) (intern (string-upcase (string-trim '(#\Space) s)) :keyword))
+                      (uiop:split-string cascade-str :separator '(#\,))))
+        (setf *provider-cascade* (mapcar #'car *provider-configs*)))))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(provider-register-all)
+(provider-cascade-initialize)
+
+(defskill :passepartout-gateway-provider
+  :priority 50
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+#+end_src

org/gateway-tui.org

@@ -0,0 +1,321 @@
+#+TITLE: Passepartout TUI Client (Standalone)
+#+STARTUP: content
+#+FILETAGS: :tui:ux:client:
+#+PROPERTY: header-args:lisp :tangle ../lisp/gateway-tui.lisp
+
+* Overview: Architectural Intent
+
+The TUI Client is a standalone ncurses application built on Croatoan that connects to the daemon via TCP. It provides a split-pane interface: a scrollable chat history window at the top and a fixed input line at the bottom.
+
+Unlike the CLI gateway (which is a single request-response cycle), the TUI is a persistent connection. It maintains a background reader thread that listens for incoming messages from the daemon and enqueues them for display. This allows the agent to send messages to the user asynchronously — tool results, heartbeat notifications, and autonomous decisions appear in the chat window without the user having to ask.
+
+** Why a Background Reader Thread?
+
+The daemon's protocol is framed TCP — the TUI sends a message, the daemon processes it, and sends one or more responses. But the daemon can also send unsolicited messages (heartbeat notifications, tool results from autonomous actions). The background reader thread handles this by continuously reading from the socket and enqueuing messages for the main loop to display.
+
+The main loop is event-driven: on each tick, it checks for new messages in the queue, checks for keyboard input, renders updates, and sleeps for ~10ms. This gives responsive text input (no perceived latency) while keeping CPU usage near zero.
+
+* Implementation
+
+** Package Context
+
+The TUI lives in its own package (~passepartout.gateway-tui~) so it doesn't pollute the harness namespace. It depends on Croatoan (ncurses bindings), usocket (TCP client), and bordeaux-threads (background reader).
+
+#+begin_src lisp
+(in-package :cl-user)
+(defpackage :passepartout.gateway-tui
+  (:use :cl :croatoan :usocket :bordeaux-threads)
+  (:export :main))
+(in-package :passepartout.gateway-tui)
+#+end_src
+
+** Connection state
+
+The daemon host and port. Defaults to localhost:9105. These can be changed before calling ~main~.
+
+#+begin_src lisp
+(defvar *daemon-host* "localhost")
+#+end_src
+
+#+begin_src lisp
+(defvar *daemon-port* 9105)
+#+end_src
+
+** Socket and stream
+
+The TCP socket and stream used to communicate with the daemon. Set during ~main~ and used by ~input-submit~ and ~reader-start~.
+
+#+begin_src lisp
+(defvar *socket* nil)
+#+end_src
+
+#+begin_src lisp
+(defvar *stream* nil)
+#+end_src
+
+** Chat history
+
+The list of messages displayed in the chat window. Each message is a string prepended with ~⬆~ (outgoing) or ~⬇~ (incoming).
+
+#+begin_src lisp
+(defvar *chat-history* nil)
+#+end_src
+
+** Input buffer
+
+The current line the user is typing. Characters are pushed onto this list and reversed before submission.
+
+#+begin_src lisp
+(defvar *input-buffer* nil)
+#+end_src
+
+** Running flag
+
+Set to nil to signal the main loop to exit. Set by ~/exit~ command, connection errors, or ~unwind-protect~ cleanup.
+
+#+begin_src lisp
+(defvar *is-running* t)
+#+end_src
+
+** Incoming message queue
+
+Thread-safe queue for messages received by the background reader. Lock ensures the main loop and reader thread don't race on the list.
+
+#+begin_src lisp
+(defvar *queue-lock* (bt:make-lock "incoming-queue-lock"))
+#+end_src
+
+#+begin_src lisp
+(defvar *incoming* nil)
+#+end_src
+
+** Utility functions
+
+*** Debug logging
+
+Writes debugging information to ~/tmp/passepartout-tui-debug.log~. Useful for diagnosing connection issues and message parsing problems.
+
+#+begin_src lisp
+(defun log-debug (msg &rest args)
+  (ignore-errors
+    (with-open-file (s "/tmp/passepartout-tui-debug.log" :direction :output :if-exists :append :if-does-not-exist :create)
+      (format s "[~a] " (get-universal-time))
+      (apply #'format s msg args)
+      (terpri s)
+      (finish-output s))))
+#+end_src
+
+*** Message queue (message-queue-push)
+
+Adds a message to the incoming queue. Thread-safe via ~*queue-lock*~.
+
+#+begin_src lisp
+(defun message-queue-push (msg)
+  (bt:with-lock-held (*queue-lock*)
+    (setf *incoming* (append *incoming* (list msg)))))
+#+end_src
+
+*** Message queue (message-queue-drain)
+
+Drains the incoming queue, returning all messages since the last drain. Thread-safe via ~*queue-lock*~.
+
+#+begin_src lisp
+(defun message-queue-drain ()
+  (bt:with-lock-held (*queue-lock*)
+    (let ((msgs *incoming*))
+      (setf *incoming* nil)
+      msgs)))
+#+end_src
+
+** Rendering (chat-render)
+
+Renders the chat history window. Draws a bordered box with scrollable content — only the most recent ~h-2~ messages are visible, matching the window height.
+
+The box border uses Unicode box-drawing characters via Croatoan's ~box~ function.
+
+#+begin_src lisp
+(defun chat-render (win h)
+  (when (and win (integerp h))
+    (clear win)
+    (box win 0 0)
+    (let* ((view-height (- h 2))
+           (history (copy-list *chat-history*))
+           (len (length history))
+           (num-to-draw (min len view-height))
+           (slice (subseq history 0 num-to-draw)))
+      (loop for i from 0 below num-to-draw
+            for msg in (reverse slice)
+            do (when msg
+                 (add-string win (format nil "│ ~a" msg) :y (1+ i) :x 2))))
+    (refresh win)))
+#+end_src
+
+** Input handling
+
+*** Handle backspace
+
+Removes the last character from the input buffer.
+
+#+begin_src lisp
+(defun input-backspace ()
+  (pop *input-buffer*))
+#+end_src
+
+*** Handle return
+
+Sends the accumulated input as a framed protocol message to the daemon. The message format is:
+
+  (:TYPE :EVENT :META (:SOURCE :tui) :PAYLOAD (:SENSOR :user-input :TEXT "<user input>"))
+
+Also handles the ~/exit~ and ~/clear~ client-side commands before sending to the daemon.
+
+#+begin_src lisp
+(defun input-submit (stream)
+  (let ((cmd (coerce (reverse *input-buffer*) 'string)))
+    (setf *input-buffer* nil)
+    (log-debug "SUBMITTING: '~a'" cmd)
+    (when (> (length cmd) 0)
+      (push (format nil "⬆ ~a" cmd) *chat-history*)
+      (handler-case
+          (progn
+            (if (and stream (open-stream-p stream))
+                (let* ((msg (list :TYPE :EVENT 
+                                 :META (list :SOURCE :tui)
+                                 :PAYLOAD (list :SENSOR :user-input :TEXT cmd)))
+                       (payload (format nil "~s" msg))
+                       (len (length payload)))
+                  (format stream "~6,'0x~a" len payload)
+                  (finish-output stream)
+                  (log-debug "SENT WIRE: ~a" payload))
+                (push "ERROR: Not connected." *chat-history*)))
+        (error (c)
+          (log-debug "SEND ERROR: ~a" c)
+          (push (format nil "ERROR: ~a" c) *chat-history*)
+          (setf *is-running* nil))))
+    (when (string= cmd "/exit") (setf *is-running* nil))
+    (when (string= cmd "/clear") (setf *chat-history* nil))))
+#+end_src
+
+** Background Reader (reader-start)
+
+A dedicated thread that continuously reads framed messages from the daemon's TCP stream. Messages are parsed and enqueued for the main loop to display.
+
+The reader handles:
+- The ~:handshake~ action (sent on connection) — displays "* Connected *"
+- All other actions — displays the ~:text~ payload or the raw payload
+
+If the connection is lost or an error occurs, the reader logs the error, enqueues a "Connection lost" message, and sets ~*is-running*~ to nil to stop the main loop.
+
+#+begin_src lisp
+(defun reader-start (stream)
+  (bt:make-thread
+   (lambda ()
+     (loop while *is-running* do
+       (handler-case
+           (let* ((len-buf (make-string 6))
+                  (count (read-sequence len-buf stream)))
+             (if (= count 6)
+                 (let* ((msg-len (parse-integer len-buf :radix 16))
+                        (msg-buf (make-string msg-len)))
+                   (read-sequence msg-buf stream)
+                   (log-debug "DAEMON MSG: ~a" msg-buf)
+                   (let ((msg (read-from-string msg-buf)))
+                     (let ((payload (getf msg :payload)))
+                       (cond
+                         ((eq (getf payload :action) :handshake)
+                          (message-queue-push "* Connected *"))
+                         (t
+                          (let ((text (or (getf payload :text) (format nil "~a" payload))))
+                            (message-queue-push (format nil "⬇ ~a" text))))))))
+                 (sleep 0.05)))
+         (error (c)
+           (when *is-running*
+             (log-debug "READER ERROR: ~a" c)
+             (message-queue-push "ERROR: Connection lost.")
+             (setf *is-running* nil))))))
+   :name "passepartout-tui-reader"))
+#+end_src
+
+** Main Entry Point (main)
+
+The top-level entry point for the TUI application. Boot sequence:
+
+1. Connect to the daemon at ~localhost:9105~
+2. If connection fails, print an error and exit immediately
+3. Create the ncurses screen with two windows (chat + input)
+4. Start the background reader thread
+5. Enter the main loop: check for messages, check for keyboard input, render
+6. On ~unwind-protect~ cleanup: close the socket
+
+The main loop runs at ~100Hz (10ms sleep). Keyboard input is non-blocking — if no key is pressed, the loop still runs to check for incoming messages from the daemon.
+
+#+begin_src lisp
+(defun main ()
+  (log-debug "=== START ===")
+  (handler-case
+      (setf *socket* (usocket:socket-connect *daemon-host* *daemon-port*))
+    (error (e) (format t "Offline: ~a~%" e) (return-from main)))
+  (setf *stream* (usocket:socket-stream *socket*))
+  
+  (unwind-protect
+      (with-screen (scr :input-echoing nil :input-blocking nil :enable-colors t)
+        (let* ((h (or (height scr) 24))
+               (w (or (width scr) 80))
+               (chat-h (- h 4))
+               (chat-win (make-instance 'window :height chat-h :width (- w 2) :y 1 :x 1))
+               (input-win (make-instance 'window :height 1 :width (- w 2) :y (- h 2) :x 1)))
+          (setf (input-blocking input-win) nil)
+          (reader-start *stream*)
+          (loop :while *is-running* :do
+            (let ((msgs (message-queue-drain)))
+              (when msgs 
+                (dolist (m msgs) (push m *chat-history*))
+                (chat-render chat-win chat-h)))
+            (let ((ch (get-char input-win)))
+              (when (and ch (not (equal ch -1)))
+                (log-debug "KEY: ~s" ch)
+                (cond
+                  ((or (eql ch 10) (eql ch 13) (eq ch :enter) (eql ch #\Newline) (eql ch #\Return))
+                   (input-submit *stream*)
+                   (chat-render chat-win chat-h))
+                  ((or (eql ch 127) (eql ch 8) (eq ch :backspace) (eql ch #\Backspace))
+                   (input-backspace))
+                  ((characterp ch)
+                   (push ch *input-buffer*))
+                  ((integerp ch)
+                   (let ((converted (code-char ch)))
+                     (when (graphic-char-p converted)
+                       (push converted *input-buffer*))))))
+              (clear input-win)
+              (add-string input-win (format nil "▶ ~a" (coerce (reverse *input-buffer*) 'string)) :y 0 :x 1)
+              (refresh input-win))
+            (sleep 0.01))))
+    (setf *is-running* nil)
+    (when *socket* (ignore-errors (usocket:socket-close *socket*)))))
+#+end_src
+
+** REPL test script (tmux)
+
+Use this script to test the TUI non-interactively in a tmux session. It launches the TUI in a headless tmux window, sends text, and captures the output.
+
+#+begin_src bash :tangle no
+#!/bin/bash
+SESSION="oct-tui-test"
+tmux new-session -d -s "$SESSION" \
+    -e OC_CONFIG_DIR="$HOME/.config/passepartout" \
+    -e PASSEPARTOUT_DATA_DIR="$HOME/.local/share/passepartout" \
+    -e TERM="screen-256color" \
+    "sbcl --non-interactive \
+        --eval '(load (merge-pathnames \"quicklisp/setup.lisp\" (user-homedir-pathname)))' \
+        --eval '(push (truename \"$HOME/.local/share/passepartout/\") asdf:*central-registry*)' \
+        --eval '(ql:quickload :passepartout/tui)' \
+        --eval '(passepartout.gateway-tui:main)'"
+sleep 5
+tmux capture-pane -t "$SESSION" -p -S -20
+tmux send-keys -t "$SESSION" 'hello' Enter
+sleep 8
+tmux capture-pane -t "$SESSION" -p -S -20
+tmux send-keys -t "$SESSION" '/exit' Enter
+sleep 1
+tmux kill-session -t "$SESSION" 2>/dev/null || true
+#+end_src

org/package.lisp

@@ -1,7 +1,6 @@
-(defpackage :opencortex
+(defpackage :passepartout
   (:use :cl)
   (:export
-   ;; --- communication protocol ---
    #:frame-message
    #:read-framed-message
    #:PROTO-GET
@@ -12,34 +11,20 @@
    #:parse-message
    #:make-hello-message
    #:validate-communication-protocol-schema
-
-   ;; --- Daemon Lifecycle ---
    #:start-daemon
    #:stop-daemon
-   #:harness-log
+   #:log-message
    #:main
-
-   ;; --- Diagnostic Doctor ---
    #:doctor-run-all
    #:doctor-main
    #:doctor-check-dependencies
    #:doctor-check-env
-
-   ;; --- Setup Wizard ---
    #:register-provider
    #:system-ready-p
    #:run-setup-wizard
-
-   ;; --- Gateway Manager Skill ---
    #:skill-gateway-register
    #:skill-gateway-link
    #:gateway-manager-main
-
-   ;; --- Diagnostic Doctor ---
-   #:doctor-run-all
-   #:doctor-main
-
-   ;; --- Memory (CLOSOS) ---
    #:ingest-ast
    #:lookup-object
    #:list-objects-by-type
@@ -60,8 +45,6 @@
    #:org-object-hash
    #:snapshot-memory
    #:rollback-memory
-
-   ;; --- Context API (Peripheral Vision) ---
    #:context-query-store
    #:context-get-active-projects
    #:context-get-recent-completed-tasks
@@ -70,31 +53,26 @@
    #:context-get-system-logs
    #:context-resolve-path
    #:context-get-skill-telemetry
-   #:harness-track-telemetry
+   #:telemetry-track
    #:context-assemble-global-awareness
-
-   ;; --- Reactive Signal Pipeline ---
    #:process-signal
    #:perceive-gate
    #:probabilistic-gate
    #:consensus-gate
    #:act-gate
    #:reason-gate
-   #:perceive-gate
    #:dispatch-gate
    #:inject-stimulus
    #:initialize-actuators
    #:dispatch-action
    #:register-actuator
-
-   ;; --- Skill Engine ---
    #:load-skill-from-org
    #:initialize-all-skills
    #:load-skill-with-timeout
    #:topological-sort-skills
    #:validate-lisp-syntax
    #:defskill
-   #:*skills-registry*
+   #:*skill-registry*
    #:skill
    #:skill-name
    #:skill-priority
@@ -102,53 +80,40 @@
    #:skill-trigger-fn
    #:skill-probabilistic-prompt
    #:skill-deterministic-fn
-
-   ;; --- Tool Registry ---
-   #:def-cognitive-tool
-   #:*cognitive-tools*
-
-   ;; --- Engineering Standards Skill ---
+   #:cognitive-tool-define
+   #:*cognitive-tool-registry*
    #:verify-git-clean-p
-
-   ;; --- Literate Programming Skill ---
+   #:engineering-standards-verify-lisp
+   #:engineering-standards-format-lisp
    #:literate-check-block-balance
    #:check-tangle-sync
    #:*tangle-targets*
-
-   ;; --- Emacs Edit Skill ---
-   #:emacs-edit-read-file
-   #:emacs-edit-write-file
-   #:emacs-edit-add-headline
-   #:emacs-edit-set-property
-   #:emacs-edit-set-todo
-   #:emacs-edit-find-headline-by-id
-   #:emacs-edit-find-headline-by-title
-   #:emacs-edit-generate-id
-   #:emacs-edit-id-format
-   #:emacs-edit-ast-to-org
-   #:emacs-edit-modify
-
-   ;; --- Lisp Utils Skill ---
-   #:lisp-utils-validate
-   #:lisp-utils-check-structural
-   #:lisp-utils-check-syntactic
-   #:lisp-utils-check-semantic
-   #:lisp-utils-register
-
-   ;; --- Config Manager & Diagnostics Skill ---
-   #:register-provider
-   #:save-providers
-   #:configure-provider
-   #:run-setup-wizard
+   #:utils-org-read-file
+   #:utils-org-write-file
+   #:utils-org-add-headline
+   #:utils-org-set-property
+   #:utils-org-set-todo
+   #:utils-org-find-headline-by-id
+   #:utils-org-find-headline-by-title
+   #:utils-org-generate-id
+   #:utils-org-id-format
+   #:utils-org-ast-to-org
+   #:utils-org-modify
+   #:utils-lisp-validate
+   #:utils-lisp-check-structural
+   #:utils-lisp-check-syntactic
+   #:utils-lisp-check-semantic
+   #:utils-lisp-eval
+   #:utils-lisp-format
+   #:utils-lisp-list-definitions
+   #:utils-lisp-structural-extract
+   #:utils-lisp-structural-wrap
+   #:utils-lisp-structural-inject
+   #:utils-lisp-structural-slurp
+   #:utils-lisp-register
    #:get-oc-config-dir
    #:prompt-for
    #:save-secret
-   #:doctor-check-dependencies
-   #:doctor-check-xdg
-   #:doctor-check-llm
-   #:doctor-run-all
-
-   ;; --- Tool Permissions Skill ---
    #:get-tool-permission
    #:set-tool-permission
    #:check-tool-permission-gate
@@ -158,60 +123,51 @@
    #:cognitive-tool-parameters
    #:cognitive-tool-guard
    #:cognitive-tool-body
-
-   ;; --- Emacs Client Registry ---
    #:*emacs-clients*
    #:*clients-lock*
    #:register-emacs-client
    #:unregister-emacs-client
-
-   ;; --- Probabilistic Engine ---
    #:ask-probabilistic
    #:register-probabilistic-backend
    #:distill-prompt
+   #:*probabilistic-backends*
    #:*provider-cascade*
-
-   ;; --- Security Vault ---
    #:vault-get-secret
    #:vault-set-secret
-
-   ;; --- Deterministic Logic ---
-   #:list-objects-with-attribute
+   #:memory-objects-by-attribute
    #:deterministic-verify
-
-   ;; --- AST Helpers ---
    #:find-headline-missing-id))
 
-(in-package :opencortex)
+(in-package :passepartout)
 
-(defun proto-get (plist key)
-  "Robustly retrieves a value from a plist, checking both uppercase and lowercase keyword versions."
+(defun plist-get (plist key)
+  "Robust plist accessor — checks both :KEY and :key variants."
   (let* ((s (string key))
          (up (intern (string-upcase s) :keyword))
          (dn (intern (string-downcase s) :keyword)))
     (or (getf plist up) (getf plist dn))))
 
-(defvar *system-logs* nil)
-(defvar *logs-lock* (bordeaux-threads:make-lock "harness-logs-lock"))
-(defvar *max-log-history* 100)
+(defvar *log-buffer* nil)
+(defvar *log-lock* (bordeaux-threads:make-lock "log-messages-lock"))
+(defvar *log-limit* 100)
 
-(defvar *skills-registry* (make-hash-table :test 'equal)
+(defvar *skill-registry* (make-hash-table :test 'equal)
   "Global registry of all loaded skills.")
 
-(defvar *skill-telemetry* (make-hash-table :test 'equal))
+(defvar *telemetry-table* (make-hash-table :test 'equal))
 (defvar *telemetry-lock* (bordeaux-threads:make-lock "harness-telemetry-lock"))
 
-(defun harness-track-telemetry (skill-name duration status)
-  "Updates performance metrics for a specific skill. Status should be :success or :rejected."
+(defun telemetry-track (skill-name duration status)
+  "Updates performance metrics for a skill. STATUS is :success or :rejected."
   (when skill-name
     (bordeaux-threads:with-lock-held (*telemetry-lock*)
-      (let ((entry (or (gethash skill-name *skill-telemetry*) (list :executions 0 :total-time 0 :failures 0))))
+      (let ((entry (or (gethash skill-name *telemetry-table*) (list :executions 0 :total-time 0 :failures 0))))
         (incf (getf entry :executions))
         (incf (getf entry :total-time) duration)
         (when (eq status :rejected) (incf (getf entry :failures)))
-        (setf (gethash skill-name *skill-telemetry*) entry)))))
+        (setf (gethash skill-name *telemetry-table*) entry)))))
 
-(defvar *cognitive-tools* (make-hash-table :test 'equal))
+(defvar *cognitive-tool-registry* (make-hash-table :test 'equal))
 
 (defstruct cognitive-tool
   name
@@ -220,21 +176,51 @@
   guard
   body)
 
-(defmacro def-cognitive-tool (name description parameters &key guard body)
-  "Registers a new cognitive tool into the global registry. Parameters must be a list of property lists."
-  `(setf (gethash (string-downcase (string ',name)) *cognitive-tools*)
+(defmacro cognitive-tool-define (name description parameters &key guard body)
+  "Registers a cognitive tool. PARAMETERS is a list of plists, one per parameter."
+  `(setf (gethash (string-downcase (string ',name)) *cognitive-tool-registry*)
          (make-cognitive-tool :name (string-downcase (string ',name))
                               :description ,description
                               :parameters ',parameters
                               :guard ,guard
                               :body ,body)))
 
-(defun harness-log (msg &rest args)
-  "Centralized logging for the harness."
+(defun cognitive-tool-prompt ()
+  "Serialises all registered tools into a prompt string for the LLM."
+  (let ((descriptions nil))
+    (maphash (lambda (k tool)
+               (declare (ignore k))
+               (push (format nil "- ~a: ~a~%  Parameters: ~a~%"
+                             (cognitive-tool-name tool)
+                             (cognitive-tool-description tool)
+                             (cognitive-tool-parameters tool))
+                     descriptions))
+              *cognitive-tool-registry*)
+    (if descriptions
+        (format nil "Available tools:~%~a" (apply #'concatenate 'string (sort descriptions #'string<)))
+        "No tools registered.")))
+
+(defun log-message (msg &rest args)
+  "Centralized, thread-safe logging for the harness."
   (let ((formatted-msg (apply #'format nil msg args)))
-    (bordeaux-threads:with-lock-held (*logs-lock*)
-      (push formatted-msg *system-logs*)
-      (when (> (length *system-logs*) *max-log-history*)
-        (setq *system-logs* (subseq *system-logs* 0 *max-log-history*))))
+    (bordeaux-threads:with-lock-held (*log-lock*)
+      (push formatted-msg *log-buffer*)
+      (when (> (length *log-buffer*) *log-limit*)
+        (setq *log-buffer* (subseq *log-buffer* 0 *log-limit*))))
     (format t "~a~%" formatted-msg)
     (finish-output)))
+
+(setf *debugger-hook* (lambda (condition hook)
+  "Friendly error handler - shows diagnostic message instead of raw debugger."
+  (declare (ignore hook))
+  (format t "~%")
+  (format t "┌─────────────────────────────────────────────┐~%")
+  (format t "│  ERROR: ~A~%" (type-of condition))
+  (format t "│~%")
+  (format t "│  Run: opencortex doctor~%")
+  (format t "│  For system diagnostics~%")
+  (format t "└─────────────────────────────────────────────┘~%")
+  (format t "~%")
+  (format t "Details: ~A~%" condition)
+  (finish-output)
+  (uiop:quit 1)))

org/programming-lisp.org

@@ -0,0 +1,282 @@
+#+TITLE: SKILL: Utils Lisp (org-skill-utils-lisp.org)
+#+AUTHOR: Agent
+#+FILETAGS: :skill:utils:lisp:validation:evaluation:
+#+PROPERTY: header-args:lisp :tangle ../lisp/programming-lisp.lisp
+
+* Architectural Intent: The Lisp Surgeon's Toolkit
+
+When the agent needs to modify its own code — fix a bug, add a feature, refactor a skill — it reaches for Utils Lisp. This skill provides every operation needed to read, validate, modify, and write Lisp code from within Lisp itself.
+
+This is possible only because Lisp is homoiconic: code is data. The agent can parse a function definition from a string, extract its body, wrap it in a new form, inject a new expression, and validate the result — all using the same data structures that the Lisp runtime uses to execute the code.
+
+The skill has four layers:
+1. **Validation** — three-phase gate: structural (paren balance) → syntactic (reader safety) → semantic (dangerous forms)
+2. **Evaluation** — sandboxed ~eval~ in a jailed package with ~*read-eval*~ nil
+3. **Structural surgery** — extract, inject, wrap, slurp — surgical code transformations without regex
+4. **Formatting** — auto-indentation via Emacs batch mode
+
+* Implementation
+
+** Structural Validation
+#+begin_src lisp
+(defun lisp-structural-check (code)
+  "Checks if parentheses are balanced and the code is readable."
+  (handler-case
+      (let ((*read-eval* nil))
+        (with-input-from-string (s code)
+          (loop for form = (read s nil :eof) until (eq form :eof)))
+        (values t nil))
+    (error (c)
+      (values nil (format nil "Reader Error: ~a" c)))))
+#+end_src
+
+** Syntactic Validation
+#+begin_src lisp
+(defun lisp-syntactic-check (code)
+  "Checks for valid Lisp syntax beyond just balanced parentheses."
+  (lisp-structural-check code))
+#+end_src
+
+** Semantic Validation (Safety)
+#+begin_src lisp
+(defun lisp-semantic-check (code)
+  "Checks for potentially unsafe forms."
+  (let ((unsafe-tokens '("eval" "load" "uiop:run-program" "sb-ext:run-program" "cl-user::eval")))
+    (loop for token in unsafe-tokens
+          when (search token (string-downcase code))
+          do (return-from lisp-semantic-check (values nil (format nil "Unsafe form detected: ~a" token))))
+    (values t nil)))
+#+end_src
+
+** Unified Validation Gate
+#+begin_src lisp
+(defun lisp-validate (code &key (strict t))
+  "Unified validation gate for Lisp code."
+  (multiple-value-bind (struct-ok struct-err) (lisp-structural-check code)
+    (unless struct-ok
+      (return-from lisp-validate (list :status :error :reason struct-err)))
+    (when strict
+      (multiple-value-bind (sem-ok sem-err) (lisp-semantic-check code)
+        (unless sem-ok
+          (return-from lisp-validate (list :status :error :reason sem-err)))))
+    (list :status :success)))
+#+end_src
+
+** Evaluation (REPL)
+#+begin_src lisp
+(defun lisp-eval (code-string &key (package :passepartout))
+  "Evaluates a Lisp string and captures its output/results."
+  (let ((out (make-string-output-stream))
+        (err (make-string-output-stream)))
+    (handler-case
+        (let* ((*standard-output* out)
+               (*error-output* err)
+               (*package* (or (find-package package) (find-package :passepartout)))
+               (result (with-input-from-string (s code-string)
+                         (let ((last-val nil))
+                           (loop for form = (read s nil :eof) until (eq form :eof)
+                                 do (setf last-val (eval form)))
+                           last-val))))
+          (list :status :success
+                :result (format nil "~a" result)
+                :output (get-output-stream-string out)
+                :error (get-output-stream-string err)))
+      (error (c)
+        (list :status :error
+              :reason (format nil "~a" c)
+              :output (get-output-stream-string out)
+              :error (get-output-stream-string err))))))
+#+end_src
+
+** Formatting (Emacs Batch)
+#+begin_src lisp
+(defun lisp-format (code-string)
+  "Attempts to format Lisp code using Emacs batch mode if available."
+  (handler-case
+      (let ((tmp-file "/tmp/oc-format-temp.lisp"))
+        (uiop:with-output-file (s tmp-file :if-exists :supersede)
+          (format s "~a" code-string))
+        (multiple-value-bind (out err code)
+            (uiop:run-program (list "emacs" "--batch" tmp-file 
+                                   "--eval" "(indent-region (point-min) (point-max))"
+                                   "--eval" "(princ (buffer-string))")
+                             :output :string :error-output :string :ignore-error-status t)
+          (if (= code 0)
+              out
+              (progn
+                (log-message "FORMAT ERROR: ~a" err)
+                code-string))))
+    (error (c)
+      (log-message "FORMAT EXCEPTION: ~a" c)
+      code-string)))
+#+end_src
+
+** Structural Extraction (AST)
+#+begin_src lisp
+(defun lisp-extract (code function-name)
+  "Extracts the definition of a specific function from a code string."
+  (let ((*read-eval* nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            when (and (listp form) 
+                      (symbolp (car form))
+                      (member (symbol-name (car form)) '("DEFUN" "DEFMACRO" "DEFMETHOD") :test #'string-equal)
+                      (symbolp (second form))
+                      (string-equal (symbol-name (second form)) function-name))
+            do (return-from lisp-extract (format nil "~s" form))))
+    nil))
+#+end_src
+
+** Structural Wrapping (AST)
+#+begin_src lisp
+(defun lisp-wrap (code target-name wrapper-symbol)
+  "Wraps a specific form in a wrapper form (e.g., wrap in a let)."
+  (let ((*read-eval* nil) (results nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            do (if (and (listp form) 
+                        (symbolp (second form))
+                        (string-equal (symbol-name (second form)) target-name))
+                   (push (list wrapper-symbol form) results)
+                   (push form results))))
+    (format nil "~{~s~^~%~%~}" (nreverse results))))
+#+end_src
+
+** List Definitions
+#+begin_src lisp
+(defun lisp-list-definitions (code)
+  "Returns a list of names for all top-level definitions (defun, defmacro, etc.)."
+  (let ((*read-eval* nil) (names nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            when (and (listp form) 
+                      (symbolp (car form))
+                      (member (symbol-name (car form)) 
+                              '("DEFUN" "DEFMACRO" "DEFMETHOD" "DEFVAR" "DEFPARAMETER")
+                              :test #'string-equal)
+                      (symbolp (second form)))
+            do (push (second form) names)))
+    (nreverse names)))
+#+end_src
+
+** Structural Injection (AST)
+#+begin_src lisp
+(defun lisp-inject (code target-name new-form-string)
+  "Injects a new form into the body of a targeted definition."
+  (let ((*read-eval* nil)
+        (new-form (read-from-string new-form-string))
+        (results nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            do (if (and (listp form) 
+                        (symbolp (car form))
+                        (member (symbol-name (car form)) '("DEFUN" "DEFMACRO" "DEFMETHOD") :test #'string-equal)
+                        (symbolp (second form))
+                        (string-equal (symbol-name (second form)) target-name))
+                   (push (append form (list new-form)) results)
+                   (push form results))))
+    (format nil "~{~s~^~%~%~}" (nreverse results))))
+#+end_src
+
+** Structural Slurp (AST)
+#+begin_src lisp
+(defun lisp-slurp (code target-name form-to-slurp-string)
+  "Adds a form to the end of a named list or definition (Paredit slurp)."
+  (let ((*read-eval* nil)
+        (to-slurp (read-from-string form-to-slurp-string))
+        (results nil))
+    (with-input-from-string (s code)
+      (loop for form = (read s nil :eof) until (eq form :eof)
+            do (if (and (listp form) 
+                        (symbolp (second form))
+                        (string-equal (symbol-name (second form)) target-name))
+                   (push (append form (list to-slurp)) results)
+                   (push form results))))
+    (format nil "~{~s~^~%~%~}" (nreverse results))))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-programming-lisp
+  :priority 400
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+#+end_src
+
+* Test Suite
+Tests for the Lisp Validator structural, syntactic, and semantic gates.
+#+begin_src lisp :tangle ../lisp/programming-lisp.lisp
+(defpackage :passepartout-utils-lisp-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:utils-lisp-suite))
+
+(in-package :passepartout-utils-lisp-tests)
+
+(def-suite utils-lisp-suite
+  :description "Tests for the Lisp Validator structural, syntactic, and semantic gates")
+
+(in-suite utils-lisp-suite)
+
+(test structural-balanced
+  (is (eq t (passepartout:lisp-structural-check "(+ 1 2)"))))
+
+(test structural-unbalanced-open
+  (multiple-value-bind (ok reason) (passepartout:lisp-structural-check "(+ 1 2")
+    (is (null ok))
+    (is (search "Reader Error" reason))))
+
+(test structural-unbalanced-close
+  (multiple-value-bind (ok reason) (passepartout:lisp-structural-check "+ 1 2)")
+    (is (null ok))
+    (is (search "Reader Error" reason))))
+
+(test syntactic-valid
+  (is (eq t (passepartout:lisp-syntactic-check "(+ 1 2)"))))
+
+(test semantic-safe
+  (is (eq t (passepartout:lisp-semantic-check "(+ 1 2)"))))
+
+(test semantic-blocked-eval
+  (multiple-value-bind (ok reason) (passepartout:lisp-semantic-check "(eval '(+ 1 2))")
+    (is (null ok))
+    (is (search "Unsafe" reason))))
+
+(test unified-success
+  (let ((result (passepartout:lisp-validate "(+ 1 2)" :strict t)))
+    (is (eq (getf result :status) :success))))
+
+(test unified-failure
+  (let ((result (passepartout:lisp-validate "(+ 1 2" :strict nil)))
+    (is (eq (getf result :status) :error))))
+
+(test eval-basic
+  (let ((result (passepartout:lisp-eval "(+ 1 2)")))
+    (is (eq (getf result :status) :success))
+    (is (string= (getf result :result) "3"))))
+
+(test structural-extract
+  (let* ((code "(defun hello () (print \"hi\")) (defun bye () (print \"bye\"))")
+         (extracted (passepartout:lisp-extract code "hello")))
+    (is (not (null extracted)))
+    (let ((form (read-from-string extracted)))
+      (is (eq (car form) 'DEFUN))
+      (is (eq (second form) 'HELLO)))))
+
+(test list-definitions
+  (let ((code "(defun foo () t) (defmacro bar () nil) (defparameter *baz* 10)"))
+    (let ((names (passepartout:lisp-list-definitions code)))
+      (is (member 'FOO names))
+      (is (member 'BAR names))
+      (is (member '*BAZ* names)))))
+
+(test structural-inject
+  (let* ((code "(defun my-fun (x) (print x))")
+         (injected (passepartout:lisp-inject code "my-fun" "(finish-output)")))
+    (let ((form (read-from-string injected)))
+      (is (equal (last form) '((FINISH-OUTPUT)))))))
+
+(test structural-slurp
+  (let* ((code "(defun work () (step-1))")
+         (slurped (passepartout:lisp-slurp code "work" "(step-2)")))
+    (let ((form (read-from-string slurped)))
+      (is (equal (last form) '((STEP-2)))))))
+#+end_src

org/programming-literate.org

@@ -0,0 +1,109 @@
+#+TITLE: SKILL: Literate Programming (org-skill-literate-programming.org)
+#+AUTHOR: Agent
+#+FILETAGS: :system:literate:tangle:
+#+PROPERTY: header-args:lisp :tangle ../lisp/programming-literate.lisp
+
+* Overview
+This skill enforces the literal programming discipline for all Passepartout source code. It defines the rules for one-function-per-block, prose-before-code, reflecting working code back from the REPL to Org, and the tangle mandate (never edit .lisp directly). Every Org file that contains Lisp code should follow the rules defined here.
+
+** Discipline Rules
+
+*** One Function, One Block
+Every ~#+begin_src lisp~ block contains exactly one function definition. Never bundle multiple definitions in a single block. This keeps the Org file granular, reviewable, and tanglable without side effects.
+
+*** Prose Before Code
+Every block must be preceded by an Org headline and explanatory prose that covers:
+- What the function does
+- Its arguments (including any &key, &optional)
+- Its return value
+- The rationale for its existence
+
+The prose is not a comment — it is the authoritative specification. The code implements what the prose describes.
+
+*** Reflect Back, Don't Write Directly
+Code is explored and verified in the REPL first (per Engineering Standards lifecycle). Once working, it is *reflected back* into the Org file. This means:
+- The REPL is the proving ground — iterate there
+- The Org file is the record — copy working code there
+- Never write code directly into an Org block without first evaluating it in the REPL
+
+*** Code and Prose Together
+Every ~#+begin_src lisp~ block flows from the prose above it. The reader (human or agent) should understand the function's contract from the prose before reading the code. If the code and prose disagree, the prose is wrong — update both.
+
+*** Tangle Mandate
+The `.lisp` file is derived, not authored. Never edit `.lisp` directly. All changes flow through Org: edit Org → tangle → `.lisp` updates. Violating this corrupts the skill loader and causes boot failure.
+
+* Implementation
+
+** Block Extraction
+#+begin_src lisp
+(defun literate-extract-lisp-blocks (content)
+  "Extracts all #+begin_src lisp ... #+end_src blocks from Org CONTENT.
+Returns a list of block strings."
+  (let ((lines (uiop:split-string content :separator '(#\Newline)))
+        (blocks nil)
+        (in-block nil)
+        (current-block nil))
+    (dolist (line lines)
+      (let ((trimmed (string-trim '(#\Space) line)))
+        (cond
+          ((uiop:string-prefix-p "#+begin_src lisp" trimmed)
+           (setf in-block t current-block nil))
+          ((uiop:string-prefix-p "#+end_src" trimmed)
+           (when in-block
+             (push (format nil "~{~a~^~%~}" (nreverse current-block)) blocks)
+             (setf in-block nil current-block nil)))
+          (in-block
+           (push line current-block)))))
+    (nreverse blocks)))
+#+end_src
+
+** Synchronization Logic
+#+begin_src lisp
+(defun literate-block-balance-check (org-file)
+  "Verifies that all Lisp source blocks in an Org file have balanced parentheses.
+Returns T if all blocks pass validation, or an error string listing failures."
+  (when (not (uiop:file-exists-p org-file))
+    (return-from literate-block-balance-check
+      (format nil "Org file not found: ~a" org-file)))
+  (let* ((content (uiop:read-file-string org-file))
+         (blocks (literate-extract-lisp-blocks content))
+         (failures nil))
+    (if (null blocks)
+        t
+        (progn
+          (loop for i from 0
+                for block in blocks
+                for (ok reason) = (multiple-value-list
+                                    (lisp-structural-check block))
+                unless ok
+                do (push (format nil "Block ~d: ~a" (1+ i) reason) failures))
+          (if failures
+              (format nil "Unbalanced blocks in ~a:~%~{~a~^~%~}" org-file failures)
+              t)))))
+
+(defun literate-tangle-sync-check (org-file lisp-file)
+  "Verifies that the .lisp file matches the tangled output of the .org file.
+Compares the concatenation of all lisp blocks from the Org file against the
+contents of the Lisp file. Returns T if they match, or an error message."
+  (when (not (uiop:file-exists-p org-file))
+    (return-from literate-tangle-sync-check
+      (format nil "Org file not found: ~a" org-file)))
+  (when (not (uiop:file-exists-p lisp-file))
+    (return-from literate-tangle-sync-check
+      (format nil "Lisp file not found: ~a" lisp-file)))
+  (let* ((org-content (uiop:read-file-string org-file))
+         (org-blocks (literate-extract-lisp-blocks org-content))
+         (tangled (format nil "~{~a~^~%~%~}" org-blocks))
+         (lisp-content (uiop:read-file-string lisp-file)))
+    (if (string= (string-trim '(#\Space #\Newline) tangled)
+                 (string-trim '(#\Space #\Newline) lisp-content))
+        t
+        (format nil "Tangle sync mismatch: ~a does not match ~a" org-file lisp-file))))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-programming-literate
+  :priority 300
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+#+end_src

org/programming-org.org

@@ -0,0 +1,293 @@
+#+TITLE: SKILL: Utils Org (org-skill-utils-org.org)
+#+AUTHOR: Agent
+#+FILETAGS: :skill:utils:org:
+#+PROPERTY: header-args:lisp :tangle ../lisp/programming-org.lisp
+
+* Overview
+Structural manipulation tools for Org-mode files. This skill handles reading, writing, and modifying Org files at the AST level: finding headlines by ID or title, setting properties and TODO states, adding new headlines, generating UUIDs, and converting ASTs back to Org text. It also implements the privacy filter — when reading an Org file, it strips headlines tagged with ~@personal~ (or any tag in ~bouncer-privacy-tags~) and rejects files with matching ~#+FILETAGS:~.
+
+* Implementation
+
+** Reading Files (with Privacy Filter)
+#+begin_src lisp
+(defun org-filetags-extract (content)
+  "Extracts the list of tags from a #+FILETAGS: line."
+  (let ((lines (uiop:split-string content :separator '(#\Newline))))
+    (dolist (line lines)
+      (when (uiop:string-prefix-p "#+FILETAGS:" (string-trim '(#\Space) line))
+        (let ((tag-str (string-trim " :" (subseq (string-trim '(#\Space) line) 10))))
+          (return-from org-filetags-extract
+            (mapcar (lambda (tag) (format nil ":~a" (string-trim '(#\Space) tag)))
+                    (uiop:split-string tag-str :separator '(#\space #\tab))))))))
+  nil)
+
+(defun org-privacy-tag-p (tags-list)
+  "Returns T if any tag in TAGS-LIST matches bouncer-privacy-tags."
+  (let ((privacy-tags (symbol-value (find-symbol "BOUNCER-PRIVACY-TAGS" :passepartout))))
+    (when (and tags-list privacy-tags)
+      (some (lambda (tag)
+              (some (lambda (private-tag)
+                      (string-equal (string-trim '(#\: #\space) tag)
+                                    (string-trim '(#\: #\space) private-tag))
+                    privacy-tags))
+            tags-list)))))
+
+(defun org-privacy-strip (content)
+  "Removes Org headlines whose :TAGS: property contains a privacy-filtered tag.
+Returns the filtered content as a string."
+  (let* ((lines (uiop:split-string content :separator '(#\Newline)))
+         (result-lines nil)
+         (skip-depth nil)
+         (current-tags nil)
+         (in-properties nil))
+    (dolist (line lines)
+      (cond
+        (skip-depth
+         ;; We're inside a skipped subtree
+         (when (and (uiop:string-prefix-p "*" (string-trim '(#\Space) line))
+                    (<= (length (string-trim '(#\Space) line)) skip-depth))
+           (setf skip-depth nil)))
+        ((uiop:string-prefix-p ":PROPERTIES:" (string-trim '(#\Space) line))
+         (setf in-properties t)
+         (push line result-lines))
+        ((uiop:string-prefix-p ":END:" (string-trim '(#\Space) line))
+         (setf in-properties nil)
+         (when current-tags
+           (when (org-privacy-tag-p (reverse current-tags))
+             (setf skip-depth
+                   (length (car (last result-lines
+                                      (1+ (position-if
+                                           (lambda (l)
+                                             (uiop:string-prefix-p "*" (string-trim '(#\Space) l)))
+                                           (reverse result-lines))))))))
+           (setf current-tags nil))
+         (push line result-lines))
+        ((and in-properties (uiop:string-prefix-p ":TAGS:" (string-trim '(#\Space) line)))
+         (let ((tag-val (string-trim '(#\Space) (subseq (string-trim '(#\Space) line) 6))))
+           (setf current-tags (uiop:split-string tag-val :separator '(#\space #\tab))))
+         (push line result-lines))
+        (t
+         (push line result-lines))))
+    (format nil "~{~a~%~}" (nreverse result-lines))))
+
+(defun org-read-file (filepath)
+  "Reads an Org file into a string, applying privacy filtering."
+  (let* ((raw (uiop:read-file-string filepath))
+         (filetags (org-filetags-extract raw)))
+    (if (org-privacy-tag-p filetags)
+        (progn
+          (log-message "UTILS-ORG: Blocked read of ~a — file-level privacy tag(s) ~a" filepath filetags)
+          nil)
+        (org-privacy-strip raw))))
+#+end_src
+
+** Writing Files
+#+begin_src lisp
+(defun org-write-file (filepath content)
+  "Writes content to an Org file."
+  (uiop:with-output-file (s filepath :if-exists :supersede)
+    (format s "~a" content)))
+#+end_src
+
+** ID Generation
+#+begin_src lisp
+(defun org-id-generate ()
+  "Generates a new UUID for an Org node."
+  (string-downcase (format nil "~a" (uuid:make-v4-uuid))))
+#+end_src
+
+** ID Formatting
+#+begin_src lisp
+(defun org-id-format (id)
+  "Ensures the ID has the 'id:' prefix."
+  (if (uiop:string-prefix-p "id:" id)
+      id
+      (format nil "id:~a" id)))
+#+end_src
+
+** Setting Properties (Recursive)
+#+begin_src lisp
+(defun org-property-set (ast target-id property value)
+  "Recursively sets a property on a headline with a matching ID in the AST."
+  (let ((type (getf ast :type))
+        (props (getf ast :properties))
+        (contents (getf ast :contents)))
+    (when (and (eq type :HEADLINE) (string= (getf props :ID) target-id))
+      (setf (getf (getf ast :properties) property) value)
+      (return-from org-property-set t))
+    (dolist (child contents)
+      (when (listp child)
+        (when (org-property-set child target-id property value)
+          (return-from org-property-set t)))))
+  nil)
+#+end_src
+
+** Setting TODO Status
+#+begin_src lisp
+(defun org-todo-set (ast target-id status)
+  "Sets the TODO status of a headline in the AST."
+  (org-property-set ast target-id :TODO status))
+#+end_src
+
+** Adding Headlines
+#+begin_src lisp
+(defun org-headline-add (ast parent-id title)
+  "Adds a new headline as a child of the parent-id in the AST."
+  (let* ((type (getf ast :type))
+         (props (getf ast :properties))
+         (id (getf props :ID))
+         (contents (getf ast :contents)))
+    (when (and (eq type :HEADLINE) (string= id parent-id))
+      (let ((new-node (list :type :HEADLINE
+                           :properties (list :ID (org-id-format (org-id-generate))
+                                            :TITLE title)
+                           :contents nil)))
+        (setf (getf ast :contents) (append contents (list new-node)))
+        (return-from org-headline-add t)))
+    (dolist (child contents)
+      (when (listp child)
+        (when (org-headline-add child parent-id title)
+          (return-from org-headline-add t)))))
+  nil)
+#+end_src
+
+** Searching Headlines (by ID)
+#+begin_src lisp
+(defun org-headline-find-by-id (ast id)
+  "Finds a headline by its ID in the AST."
+  (let ((props (getf ast :properties)))
+    (when (string= (getf props :ID) id)
+      (return-from org-headline-find-by-id ast))
+    (dolist (child (getf ast :contents))
+      (when (listp child)
+        (let ((found (org-headline-find-by-id child id)))
+          (when found (return-from org-headline-find-by-id found)))))
+    nil))
+#+end_src
+
+** Searching Headlines (by Title)
+#+begin_src lisp
+(defun org-headline-find-by-title (ast title)
+  "Finds a headline by its title in the AST."
+  (let ((props (getf ast :properties)))
+    (when (string-equal (getf props :TITLE) title)
+      (return-from org-headline-find-by-title ast))
+    (dolist (child (getf ast :contents))
+      (when (listp child)
+        (let ((found (org-headline-find-by-title child title)))
+          (when found (return-from org-headline-find-by-title found)))))
+    nil))
+#+end_src
+
+** Text Modification in Org Files
+Replaces text in Org files with verification. Used by =system-self-improve= for
+surgical edits.
+
+#+begin_src lisp
+(defun org-modify (filepath old-text new-text)
+  "Replaces all occurrences of OLD-TEXT with NEW-TEXT in filepath.
+Returns T if OLD-TEXT was found and replaced, nil if not found."
+  (when (not (uiop:file-exists-p filepath))
+    (log-message "UTILS-ORG: org-modify: file not found: ~a" filepath)
+    (return-from org-modify nil))
+  (let* ((content (uiop:read-file-string filepath))
+         (pos (search old-text content :test #'string=)))
+    (unless pos
+      (log-message "UTILS-ORG: org-modify: text not found in ~a" filepath)
+      (return-from org-modify nil))
+    (let ((modified (cl-ppcre:regex-replace-all
+                      (cl-ppcre:quote-meta-chars old-text)
+                      content new-text)))
+      (org-write-file filepath modified)
+      (log-message "UTILS-ORG: Modified ~a (~d chars replaced)" filepath (length old-text))
+      t)))
+#+end_src
+
+** AST to Org text conversion
+#+begin_src lisp
+(defun org-ast-render (ast &key (depth 1))
+  "Converts a plist AST node back to Org text.
+AST format: (:TYPE :HEADLINE :properties (:ID ... :TITLE ... :TAGS (...))
+              :contents (child-ast ...))"
+  (let* ((type (getf ast :TYPE))
+         (props (getf ast :properties))
+         (title (or (getf props :TITLE) "Untitled"))
+         (tags (getf props :TAGS))
+         (todo (getf props :TODO-STATE))
+         (children (getf ast :contents))
+         (raw-content (getf ast :raw-content))
+         (stars (make-string depth :initial-element #\*))
+         (output ""))
+    (unless (eq type :HEADLINE)
+      (return-from org-ast-render (or raw-content "")))
+    ;; Headline
+    (setf output (format nil "~a~@[ ~a~] ~a" stars todo title))
+    (when tags
+      (let ((tag-str (format nil "~{~a~^:~}" (mapcar (lambda (t) (string-trim '(#\:) t)) tags))))
+        (setf output (concatenate 'string output (format nil " :~a::~%" tag-str))))
+      (setf output (concatenate 'string output (string #\Newline))))
+    (unless tags
+      (setf output (concatenate 'string output (string #\Newline))))
+    ;; Property drawer
+    (setf output (concatenate 'string output ":PROPERTIES:" (string #\Newline)))
+    (loop for (k v) on props by #'cddr
+          do (unless (or (eq k :TITLE) (eq k :TAGS))
+               (setf output (concatenate 'string output
+                                         (format nil ":~a: ~a~%" k v)))))
+    (setf output (concatenate 'string output ":END:" (string #\Newline)))
+    ;; Content
+    (when raw-content
+      (setf output (concatenate 'string output raw-content (string #\Newline))))
+    ;; Children
+    (dolist (child children)
+      (when (listp child)
+        (setf output (concatenate 'string output
+                                  (org-ast-render child :depth (1+ depth))))))
+    output))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-programming-org
+  :priority 100
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+#+end_src
+
+* Test Suite
+Verification of the structural manipulation for Org-mode files and their AST representation.
+#+begin_src lisp :tangle ../lisp/programming-org.lisp
+(defpackage :passepartout-utils-org-tests
+  (:use :cl :fiveam :passepartout)
+  (:export #:utils-org-suite))
+
+(in-package :passepartout-utils-org-tests)
+
+(def-suite utils-org-suite
+  :description "Tests for Utils Org skill.")
+
+(in-suite utils-org-suite)
+
+(test id-generation
+  (let ((id1 (org-id-generate))
+        (id2 (org-id-generate)))
+    (is (plusp (length id1)))
+    (is (not (string= id1 id2)))))
+
+(test id-format
+  (let ((formatted (org-id-format "abc12345")))
+    (is (search "id:" formatted))))
+
+(test property-setter
+  (let ((ast (list :type :HEADLINE
+                  :properties (list :ID "id:test123" :TITLE "Test")
+                  :contents nil)))
+    (org-property-set ast "id:test123" :STATUS "ACTIVE")
+    (is (string= (getf (getf ast :properties) :STATUS) "ACTIVE"))))
+
+(test todo-setter
+  (let ((ast (list :type :HEADLINE
+                  :properties (list :ID "id:todo001" :TITLE "Task")
+                  :contents nil)))
+    (org-todo-set ast "id:todo001" "DONE")
+    (is (string= (getf (getf ast :properties) :TODO) "DONE"))))
+#+end_src

org/programming-repl.org

@@ -0,0 +1,211 @@
+#+TITLE: SKILL: REPL (org-skill-repl.org)
+#+AUTHOR: Agent
+#+FILETAGS: :system:repl:interactive:debug:
+#+PROPERTY: header-args:lisp :tangle ../lisp/programming-repl.lisp
+
+* Overview
+The *REPL Skill* provides persistent Lisp evaluation, inspection, and debugging capabilities. This enables the agent to verify behavior at runtime rather than just at the text level.
+
+* Phase A: Demand (Thinking)
+** Why a REPL?
+The utils-lisp-eval function provides one-shot evaluation but:
+- No state persistence between calls
+- No variable inspection
+- No debugging capabilities
+
+The REPL skill fills this gap by:
+- Maintaining evaluation state across turns
+- Supporting variable inspection
+- Providing debugging commands
+- Optionally connecting to external Swank servers
+
+** Success Criteria
+- Code evaluation returns result + stdout/stderr separately
+- Variables can be inspected
+- Can load code into image
+- Optional: connect to external SLIME/Swank session
+
+* Phase B: Protocol (Spec)
+- `repl-eval` returns: (values result output error)
+- `repl-inspect` returns: structured description
+- `repl-list-vars` returns: list of bound symbols
+- `repl-load-file` returns: t on success, error on failure
+
+* Phase C: Implementation
+
+** Global State
+#+begin_src lisp
+(in-package :passepartout)
+
+(defvar *repl-package* :passepartout
+  "Default package for REPL evaluations.")
+
+(defvar *repl-history* nil
+  "History of evaluated forms for session continuity.")
+
+(defvar *repl-variables* (make-hash-table :test #'eq)
+  "Cache of bound variables for inspection.")
+#+end_src
+
+** Core Evaluation
+#+begin_src lisp
+(defun repl-eval (code-string &key (package *repl-package*))
+  "Evaluate Lisp code and return (values result output error).
+   - result: the return value as string
+   - output: captured stdout
+   - error: error message or nil on success"
+  (let ((out (make-string-output-stream))
+        (err (make-string-output-stream))
+        (pkg (or (find-package package) (find-package :passepartout))))
+    (handler-case
+        (let* ((*standard-output* out)
+               (*error-output* err)
+               (*package* pkg)
+               (*read-eval* nil)
+               (result nil))
+          (with-input-from-string (s code-string)
+            (loop for form = (read s nil :eof) until (eq form :eof)
+                  do (setf result (eval form))))
+          (push code-string *repl-history*)
+          (values
+           (format nil "~a" result)
+           (get-output-stream-string out)
+           nil))
+      (error (c)
+        (values
+         nil
+         (get-output-stream-string out)
+         (format nil "~a" c))))))
+#+end_src
+
+** Variable Inspection
+#+begin_src lisp
+(defun repl-inspect (symbol-name &key (package *repl-package*))
+  "Inspect a variable's value and structure."
+  (let* ((pkg (or (find-package package) (find-package :passepartout)))
+         (sym (find-symbol (string-upcase symbol-name) pkg)))
+    (cond
+      ((null sym)
+       (format nil "Symbol ~a not found in package ~a" symbol-name package))
+      ((boundp sym)
+       (let ((val (symbol-value sym)))
+         (format nil "~a = ~a~%Type: ~a~%~%"
+                 sym val (type-of val))))
+      ((fboundp sym)
+       (format nil "~a is a function~%Args: ~a~%"
+               sym (documentation sym 'function)))
+      (t
+       (format nil "~a is unbound" symbol-name)))))
+#+end_src
+
+** List Bound Variables
+#+begin_src lisp
+(defun repl-list-vars (&key (package *repl-package*))
+  "List all bound variables in the package."
+  (let* ((pkg (or (find-package package) (find-package :passepartout)))
+         (vars nil))
+    (do-symbols (sym pkg)
+      (when (boundp sym)
+        (push (format nil "~a" sym) vars)))
+    (sort vars #'string<)))
+#+end_src
+
+** Load File into Image
+#+begin_src lisp
+(defun repl-load-file (filepath)
+  "Load a Lisp file into the current image."
+  (handler-case
+      (progn
+        (load filepath)
+        (format nil "Loaded ~a" filepath))
+    (error (c)
+      (format nil "Error loading ~a: ~a" filepath c))))
+#+end_src
+
+** Package Switching
+#+begin_src lisp
+(defun repl-set-package (package-name)
+  "Set the default package for REPL evaluations."
+  (let ((pkg (find-package (string-upcase package-name))))
+    (if pkg
+        (setf *repl-package* pkg)
+        (format nil "Package ~a not found" package-name))))
+#+end_src
+
+** Help/Info
+#+begin_src lisp
+(defun repl-help ()
+  "Return available REPL commands."
+  (format nil "~%
+REPL Skill Commands:
+-------------------
+(repl-eval \"code\" :package :passepartout)
+  - Evaluate Lisp code, returns (values result output error)
+
+(repl-inspect \"symbol\" :package :passepartout)
+  - Inspect a variable or function
+
+(repl-list-vars :package :passepartout)
+  - List all bound variables
+
+(repl-load-file \"/path/to/file.lisp\")
+  - Load a file into the image
+
+(repl-set-package :package-name)
+  - Switch default package
+
+(repl-help)
+  - Show this message
+"))
+#+end_src
+
+* Phase D: Verification
+
+** Basic Evaluation Test
+#+begin_src lisp :tangle no
+(test test-repl-eval-simple
+  "Test basic arithmetic evaluation."
+  (multiple-value-bind (result output error)
+      (passepartout:repl-eval "(+ 1 2)")
+    (is (string= result "3"))
+    (is (null error))))
+#+end_src
+
+** Error Handling Test
+#+begin_src lisp :tangle no
+(test test-repl-eval-error
+  "Test that errors are caught and returned."
+  (multiple-value-bind (result output error)
+      (passepartout:repl-eval "(+ 1 \"string\")")
+    (is (null result))
+    (is (not (null error)))))
+#+end_src
+
+* Phase E: Lifecycle
+The REPL skill loads at priority 200 (after diagnostics at 100, before utils-lisp at 400).
+
+** System Prompt Augment (repl-mandate)
+#+begin_src lisp
+(defun repl-mandate (context)
+  "Returns REPL-first engineering mandate when context involves code editing."
+  (let ((raw (or (proto-get (proto-get context :payload) :text) "")))
+    (when (or (search "org-skill-" raw :test #'char-equal)
+              (and (search ".org" raw :test #'char-equal)
+                   (or (search "defun" raw :test #'char-equal)
+                       (search "tangle" raw :test #'char-equal)
+                       (search "write-file" raw :test #'char-equal)
+                       (search "lisp" raw :test #'char-equal)))
+              (search "defun " raw :test #'char-equal)
+              (search "repl-eval" raw :test #'char-equal)
+              (search "validate" raw :test #'char-equal))
+      (format nil "~%REPL-FIRST MANDATE:~%Before writing any defun to an Org file, prototype it in the REPL first. Set :repl-verified t on the write action. On rejection, fix the error and retry.~%"))))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-programming-repl
+  :priority 200
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil)
+  :deterministic (lambda (action ctx) (declare (ignore action ctx)) nil)
+  :system-prompt-augment #'repl-mandate)
+#+end_src

org/programming-standards.org

@@ -0,0 +1,115 @@
+#+TITLE: SKILL: Engineering Standards (org-skill-engineering-standards.org)
+#+AUTHOR: Agent
+#+FILETAGS: :system:engineering:chaos:
+#+DEPENDS_ON: org-skill-utils-lisp
+#+PROPERTY: header-args:lisp :tangle ../lisp/programming-standards.lisp
+
+* Overview
+The *Engineering Standards Skill* defines the REPL-first engineering lifecycle and enforces technical invariants, including the **Commit-Before-Modify** rule and **Chaos-Driven Development**.
+
+** Engineering Lifecycle (Two-Track)
+
+The canonical workflow. Two tracks, not to be confused:
+
+*** Track 1 — Org-First: Prose, Tests, Thinking (Phases 0/A)
+
+This track stays in Org. No code is written yet.
+
+**** Phase 0: Exploration & Documentation
+1. Read the relevant Org source files for context
+2. Explore the problem in the running REPL with ~repl-inspect~ and ~repl-eval~
+3. Document findings in Org prose
+4. If a bug: document investigation in Org before fixing (Org as thinking medium)
+
+**** Phase A: Test-First Design
+1. Write the success criteria in Org prose — what the function does, arguments, return value, rationale
+2. Write the FiveAM test in a ~#+begin_src lisp :tangle no~ block
+3. Tangle the test and evaluate in the REPL — confirm it fails (red)
+4. The failing test is the success criteria. Do not proceed to Track 2 until it exists and is red.
+
+*** Track 2 — REPL-First: Implementation, Iteration, Reflection (Phases B/C/D/E)
+
+Code is prototyped in the REPL, never written directly into Org first.
+
+**** Phase B/C: REPL Implementation
+1. Write the function directly in the REPL using ~repl-eval~
+2. Iterate: evaluate, inspect, fix, re-evaluate — the image accumulates state
+3. Run the test in the REPL — confirm green
+4. Explore edge cases with ~repl-inspect~ and ad-hoc evaluations
+5. Before writing any ~defun~ in an Org block, verify it was prototyped and tested in the REPL first
+
+**** Phase D: Chaos Verification
+Run the appropriate chaos tier before reflecting code back to Org:
+- *Tier 1 (Deterministic)*: Full FiveAM test suite — required on every change
+- *Tier 2 (Probabilistic)*: Randomized fuzzing — required on every major release
+- *Tier 3 (Stress)*: Load and resource starvation — required during hardening sprints
+
+**** Phase E: Reflect Back to Org
+1. Copy the working function into its own ~#+begin_src lisp~ block in the Org file
+2. Update the prose to match what the function actually does (arguments, return, rationale)
+3. Before closing Phase E, run ~(utils-lisp-validate (uiop:read-file-string "path/to/file.lisp") :strict t)~ in the REPL — never external scripts or manual paren-counting
+4. Verify the Org file tangles correctly
+5. Tangle, commit, update GTD
+
+**** Syntax Error Protocol
+If a LOADER ERROR or reader-error occurs:
+1. Run ~(utils-lisp-validate (uiop:read-file-string "file.lisp") :strict t)~ in the REPL — never Python, never grep, never manual counting
+2. Fix the error in the Org file (since the code was prototyped in REPL first, this should be rare)
+3. Retangle and re-evaluate
+
+Rationale: The two tracks prevent the two failure modes we have observed. Writing implementation code directly in Org (without REPL prototyping) produces syntax errors that require external tools to debug. Skipping Org-first test writing produces code without verified success criteria. The split is not bureaucratic — it is the mechanism by which both failures are prevented.
+
+** GTD Conventions
+
+Every task headline in the project's ROADMAP.org and gtd.org follows these rules:
+
+1. **:ID:** — generated by ~memory-id-generate~ (UUIDv4 with ~id-~ prefix), never written manually. Use ~(memory-id-generate)~ in the REPL to produce one.
+2. **:CREATED:** — ISO-8601 timestamp: ~[2026-05-02 Sat 14:30]~. Set when the headline is first created, never changed.
+3. **:LOGBOOK:** — each state transition is logged: ~- State "DONE" from "TODO" [2026-05-02 Sat 15:00]~.
+4. **CLOSED:** — set when the task reaches DONE: ~CLOSED: [2026-05-02 Sat 15:00]~.
+5. **TODO keywords** follow the standard sequence: ~TODO~ → ~NEXT~ → ~IN-PROGRESS~ → ~DONE~ / ~BLOCKED~ / ~CANCELLED~.
+6. **The Agent** updates these automatically during Phase E of the lifecycle. The human never needs to write a UUID or timestamp manually — the agent generates and inserts them.
+
+Example:
+
+#+begin_src org
+*** DONE Event Orchestrator
+:PROPERTIES:
+:ID:       id-4a2b9c8f-3d7e-4f12-a9b0-1c2d3e4f5a6b
+:CREATED:  [2026-05-02 Sat]
+:END:
+:LOGBOOK:
+- State "DONE" from "TODO" [2026-05-02 Sat 18:00]
+:END:
+CLOSED: [2026-05-02 Sat 18:00]
+#+end_src
+
+* Implementation
+
+** Standards Enforcement
+#+begin_src lisp
+(defun standards-git-clean-p (dir)
+  "Checks if a directory has uncommitted changes."
+  (let ((status (uiop:run-program (list "git" "-C" (namestring dir) "status" "--porcelain")
+                                 :output :string
+                                 :ignore-error-status t)))
+    (string= "" (string-trim '(#\Space #\Newline #\Tab) status))))
+
+(defun standards-lisp-verify (code)
+  "Enforces Lisp structural and semantic standards using utils-lisp."
+  (let ((result (utils-lisp-validate code :strict t)))
+    (if (eq (getf result :status) :success)
+        t
+        (error (getf result :reason)))))
+
+(defun standards-lisp-format (code)
+  "Ensures Lisp code adheres to formatting standards."
+  (utils-lisp-format code))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-programming-standards
+  :priority 100
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+#+end_src

org/security-dispatcher.org

@@ -0,0 +1,423 @@
+#+TITLE: SKILL: Bouncer (org-skill-bouncer.org)
+#+AUTHOR: Agent
+#+FILETAGS: :system:bouncer:authorization:autonomy:
+#+PROPERTY: header-args:lisp :tangle ../lisp/security-dispatcher.lisp
+
+* Deep Reasoning: Beyond Permission
+
+The Bouncer is the physical security layer of Passepartout. While the Policy skill ensures an action is "legal" (e.g., "Yes, you are allowed to send a Telegram message"), the Bouncer ensures the action is "safe" by inspecting the payload content via Deep Packet Inspection.
+
+Every action that reaches the Bouncer has already been approved by the Reasoning pipeline. The LLM generated it, the deterministic gates verified it, and the Act stage is about to execute it. The Bouncer is the last gate before the action touches the physical world.
+
+The Bouncer inspects nine vectors:
+1. **REPL verification** — warns if a defun is written without REPL prototyping
+2. **Lisp syntax** — blocks writes with unbalanced parens
+3. **Secret paths** — blocks reads to ~.env~, SSH keys, PEM files, etc.
+4. **Content exposure** — scans for API keys, PGP blocks, tokens
+5. **Vault secrets** — matches against stored credentials
+6. **Privacy tags** — blocks ~@personal~ tagged content
+7. **Privacy text** — warns if text references privacy tag names
+8. **Shell safety** — blocks destructive commands and injection patterns
+9. **Network exfil** — blocks unwhitelisted outbound connections
+
+The Bouncer also handles the **Flight Plan** system: when a high-risk action is blocked, it creates a Flight Plan node in the Org files that the user can manually approve.
+
+* Implementation
+
+* Implementation
+
+** Security Configuration — network whitelist
+Domains that the Bouncer considers safe for outbound connections. Network calls to unlisted domains are blocked or queued for approval.
+#+begin_src lisp
+(defvar *dispatcher-network-whitelist*
+  '("api.telegram.org" "matrix.org" "googleapis.com" "openai.com" "anthropic.com")
+  "Domains the Bouncer considers safe for outbound connections.")
+#+end_src
+
+** Privacy filter tags (*dispatcher-privacy-tags*)
+List of tag strings that mark content as private. Content with these tags is filtered from the LLM context window. Configurable via ~PRIVACY_FILTER_TAGS~ env var.
+#+begin_src lisp
+(defvar *dispatcher-privacy-tags*
+  (let ((env (uiop:getenv "PRIVACY_FILTER_TAGS")))
+    (if env
+        (uiop:split-string env :separator '(#\,))
+        '("@personal")))
+  "Tags marking content as private. Set via PRIVACY_FILTER_TAGS.")
+#+end_src
+
+** Protected file paths (*dispatcher-protected-paths*)
+Path patterns (with * wildcards) that are blocked from file reads. Covers SSH keys, PEM/PGP files, credentials, tokens, env files, and cloud configs.
+#+begin_src lisp
+(defvar *dispatcher-protected-paths*
+  '(".env" ".env.example" ".env.local" ".env.production"
+    "*credentials*" "*cred*"
+    "*id_rsa*" "*id_dsa*" "*id_ecdsa*" "*id_ed25519*"
+    "*.pem" "*.key" "*.p12" "*.pfx" "*.asc" "*.gpg" "*.pgp"
+    "secring.*" "pubring.*" "private-keys-v1.d/*"
+    "token*" "*secret*" "*token*"
+    ".netrc" ".git-credentials" "auth.json"
+    ".aws/credentials" ".aws/config"
+    ".kube/config" "kubeconfig"
+    "*.cert" "*.crt" "*.csr"
+    "*password*" "*passwd*")
+  "Path patterns blocked from file reads.")
+#+end_src
+
+** Content exposure patterns (*dispatcher-exposure-patterns*)
+Named regex patterns for scanning content for secret exposure. Each entry is a (name regex) pair. Matches are reported by name so downstream code can act on specific categories.
+#+begin_src lisp
+(defvar *dispatcher-exposure-patterns*
+  '((:pem-key "-----BEGIN +(RSA|DSA|EC|OPENSSH|PGP) +PRIVATE +KEY *-----")
+    (:pgp-key "-----BEGIN +PGP +PRIVATE +KEY +BLOCK-----")
+    (:pgp-public "-----BEGIN +PGP +PUBLIC +KEY +BLOCK-----")
+    (:openai-key "sk-[A-Za-z0-9-]{20,}")
+    (:google-key "AIza[0-9A-Za-z_-]{35}")
+    (:github-token "gh[pousr]_[A-Za-z0-9]{36,}")
+    (:slack-token "xox[baprs]-[A-Za-z0-9-]{24,}")
+    (:env-assignment "[A-Z_]+=[A-Za-z0-9+/=_\\-]{20,}")
+    (:generic-secret "(api|secret|password|token)[ ]*[:=][ ]*[\"']?[A-Za-z0-9_\\-]{16,}"))
+  "Named regex patterns for secret exposure detection.")
+#+end_src
+
+** Shell safety — timeout
+Maximum seconds a shell command is allowed to run before being killed.
+#+begin_src lisp
+(defvar *dispatcher-shell-timeout* 30
+  "Maximum seconds for a shell command before timeout.")
+#+end_src
+
+** Shell safety — output limit
+Maximum characters of shell command output to capture. Prevents memory exhaustion from infinite output.
+#+begin_src lisp
+(defvar *dispatcher-shell-max-output* 100000
+  "Maximum characters of shell output to capture.")
+#+end_src
+
+** Shell safety — blocked patterns
+Destructive and injection patterns that are blocked in shell commands. Covers ~rm -rf /~, ~dd~, ~mkfs~, ~shred~, backtick injection, and ~$()~ subshell injection.
+#+begin_src lisp
+(defvar *dispatcher-shell-blocked*
+  '((:destructive-rm    "\\brm\\s+-rf\\s+/")
+    (:destructive-dd    "\\bdd\\s+if=")
+    (:destructive-mkfs  "\\bmkfs\\.")
+    (:destructive-format "\\bmformat\\b")
+    (:disk-wipe         "\\bshred\\s+/dev/")
+    (:disk-wipe-b       "\\bwipefs\\s+/dev/")
+    (:injection-backtick "`[^`]+`")
+    (:injection-subshell "\\$\\([^)]+\\)"))
+  "Destructive and injection patterns blocked in shell commands.")
+#+end_src
+
+** Secret Path Check (dispatcher-check-secret-path)
+#+begin_src lisp
+(defun wildcard-match (pattern path)
+  "Matches PATH against PATTERN where * matches any characters."
+  (let ((regex (cl-ppcre:regex-replace-all
+                "\\*" (cl-ppcre:quote-meta-chars pattern) ".*")))
+    (cl-ppcre:scan regex path)))
+
+(defun dispatcher-check-secret-path (filepath)
+  "Returns the matching pattern if FILEPATH matches a protected path, nil otherwise."
+  (when (and filepath (stringp filepath))
+    (some (lambda (pattern)
+            (when (wildcard-match pattern filepath)
+              pattern))
+          *dispatcher-protected-paths*)))
+#+end_src
+
+** Content Exposure Scanner (dispatcher-exposure-scan)
+#+begin_src lisp
+(defun dispatcher-exposure-scan (text)
+  "Scans TEXT for patterns matching known secret formats.
+Returns a list of matched category keywords."
+  (when (and text (stringp text) (> (length text) 0))
+    (let ((matches nil))
+      (dolist (entry *dispatcher-exposure-patterns*)
+        (let ((name (first entry))
+              (regex (second entry)))
+          (when (cl-ppcre:scan regex text)
+            (push name matches))))
+      matches)))
+#+end_src
+
+** Vault Secret Scanning (dispatcher-vault-scan)
+#+begin_src lisp
+(defun dispatcher-vault-scan (text)
+  "Scans TEXT for known secrets from the vault."
+  (when (and text (stringp text))
+    (let ((found-secret nil))
+      (maphash (lambda (key val)
+                 (when (and val (stringp val) (> (length val) 5))
+                   (when (search val text)
+                     (setf found-secret key))))
+               *vault-memory*)
+      found-secret)))
+#+end_src
+
+** Privacy Tag Check (dispatcher-check-privacy-tags)
+#+begin_src lisp
+(defun dispatcher-check-privacy-tags (tags-list)
+  "Returns T if any tag in TAGS-LIST matches a privacy filter tag."
+  (when (and tags-list (listp tags-list))
+    (some (lambda (tag)
+            (some (lambda (private)
+                    (or (string-equal tag private)
+                        (search private tag :test #'string-equal)))
+                  *dispatcher-privacy-tags*))
+          tags-list)))
+
+(defun dispatcher-check-text-for-privacy (text)
+  "Scans TEXT for leaked privacy-tagged content."
+  (when (and text (stringp text))
+    (let ((lower (string-downcase text)))
+      (some (lambda (tag)
+              (search (string-downcase tag) lower))
+            *dispatcher-privacy-tags*))))
+#+end_src
+
+** Lisp Validation Gate (dispatcher-check-lisp-valid)
+#+begin_src lisp
+(defun org-blocks-extract (content)
+  "Extracts concatenated Lisp code from #+begin_src lisp blocks in an Org string."
+  (when (and content (stringp content))
+    (let ((lines (uiop:split-string content :separator '(#\Newline)))
+          (in-block nil)
+          (code ""))
+      (dolist (line lines)
+        (let ((clean (string-trim '(#\Space #\Tab) line)))
+          (cond
+            ((search "#+begin_src lisp" clean)
+             (setf in-block t))
+            ((search "#+end_src" clean)
+             (setf in-block nil))
+            (in-block
+             (setf code (concatenate 'string code line (string #\Newline)))))))
+      (when (> (length code) 0) code))))
+
+(defun dispatcher-check-lisp-valid (filepath content)
+  "Validates Lisp syntax when writing .lisp files or Org files with lisp blocks.
+Returns the validation result plist or nil if not applicable."
+  (when (and content (stringp content) (> (length content) 0))
+    (let ((to-validate
+           (cond
+             ((uiop:string-suffix-p filepath ".lisp") content)
+             ((uiop:string-suffix-p filepath ".org") (org-blocks-extract content))
+             (t nil))))
+      (when to-validate
+        (multiple-value-bind (valid-p err) (ignore-errors
+                                            (let ((*read-eval* nil))
+                                              (with-input-from-string (s (format nil "(progn ~a)" to-validate))
+                                                (loop for form = (read s nil :eof) until (eq form :eof)))
+                                              (values t nil)))
+          (unless valid-p
+            (list :status :error :reason err)))))))
+#+end_src
+
+** REPL Verification Gate (dispatcher-check-repl-verified)
+#+begin_src lisp
+(defun org-has-defuns-p (content)
+  "Returns T if the Org content contains any #+begin_src lisp blocks with defuns."
+  (when (and content (stringp content))
+    (search "defun " content :test #'char-equal)))
+
+(defun dispatcher-check-repl-verified (action filepath content)
+  "Warns if writing a defun to an Org file without :repl-verified metadata."
+  (let ((repl-verified (getf action :repl-verified)))
+    (when (and filepath
+               (uiop:string-suffix-p filepath ".org")
+               (org-has-defuns-p content)
+               (not repl-verified))
+      (list :type :LOG
+            :payload (list :level :warn
+                           :text (format nil "Lint: Writing defun to ~a without :repl-verified flag. Did you prototype this in the REPL first?" filepath))))))
+#+end_src
+
+** Shell Safety Check (dispatcher-check-shell-safety)
+#+begin_src lisp
+(defun dispatcher-check-shell-safety (cmd)
+  "Checks a shell command for destructive patterns and injection vectors.
+Returns a list of matched pattern names or nil if safe."
+  (when (and cmd (stringp cmd) (> (length cmd) 0))
+    (let ((matches nil))
+      (dolist (entry *dispatcher-shell-blocked*)
+        (let ((name (first entry))
+              (regex (second entry)))
+          (when (cl-ppcre:scan regex cmd)
+            (push name matches))))
+      matches)))
+#+end_src
+
+** Network Check (dispatcher-check-network-exfil)
+#+begin_src lisp
+(defun dispatcher-check-network-exfil (cmd)
+  "Detects if CMD attempts to contact an unwhitelisted external host."
+  (when (and cmd (stringp cmd))
+    (multiple-value-bind (match regs)
+        (cl-ppcre:scan-to-strings "(http|https|ftp)://([\\w\\.-]+)" cmd)
+      (declare (ignore match))
+      (when regs
+        (let ((domain (aref regs 1)))
+          (not (some (lambda (safe) (search safe domain))
+                    *dispatcher-network-whitelist*)))))))
+#+end_src
+
+** Main Security Gate (dispatcher-check)
+#+begin_src lisp
+(defun dispatcher-check (action context)
+  "Security gate for high-risk actions.
+Vectors: lisp validation, secret path, secret content, vault secrets,
+privacy tags, privacy text, shell safety, network exfil, high-impact approval."
+  (declare (ignore context))
+  (let* ((target (proto-get action :target))
+         (payload (proto-get action :payload))
+         (text (or (proto-get payload :text) (proto-get action :text)))
+         (filepath (or (proto-get payload :filepath)
+                       (when (equal (proto-get payload :tool) "read-file")
+                         (proto-get (proto-get payload :args) :filepath))
+                       (when (equal (proto-get payload :tool) "write-file")
+                         (proto-get (proto-get payload :args) :filepath))))
+         (content (when filepath (proto-get (proto-get payload :args) :content)))
+         (cmd (or (proto-get payload :cmd)
+                  (when (and (eq target :tool) (equal (proto-get payload :tool) "shell"))
+                    (proto-get (proto-get payload :args) :cmd))))
+         (approved (proto-get action :approved))
+         (tags (proto-get payload :tags))
+         (lisp-valid (when (and filepath content (not approved))
+                       (dispatcher-check-lisp-valid filepath content)))
+         (repl-lint (when (and filepath content (not approved))
+                     (dispatcher-check-repl-verified action filepath content))))
+    (cond
+      (approved action)
+
+       ;; Vector 0: REPL verification lint (warn, don't block)
+      (repl-lint
+       (log-message "BOUNCER: ~a" (proto-get repl-lint :text))
+       action)
+
+       ;; Vector 1: Lisp syntax validation (block bad lisp writes)
+      ((and lisp-valid (eq (getf lisp-valid :status) :error))
+       (log-message "LINT VIOLATION: Blocked write — lisp syntax error in ~a: ~a" filepath (getf lisp-valid :reason))
+       (list :type :LOG
+             :payload (list :level :error
+                            :text (format nil "Lisp syntax error in ~a: ~a. The write was blocked. Fix the parenthesis balance and retry." filepath (getf lisp-valid :reason)))))
+
+      ;; Vector 2: File read to a protected secret path
+      ((and filepath (dispatcher-check-secret-path filepath))
+       (let ((matched (dispatcher-check-secret-path filepath)))
+         (log-message "SECURITY VIOLATION: Blocked read of protected path '~a' (matched: ~a)" filepath matched)
+         (list :type :LOG
+               :payload (list :level :error
+                              :text (format nil "Action blocked: Attempted read of protected path '~a'" filepath)))))
+
+      ;; Vector 3: Content contains secret patterns
+      ((and text (dispatcher-exposure-scan text))
+       (let ((matched (dispatcher-exposure-scan text)))
+         (log-message "SECURITY VIOLATION: Content contains secret patterns: ~a" matched)
+         (list :type :LOG
+               :payload (list :level :error
+                              :text "Action blocked: Content contains potential secret exposure."))))
+
+      ;; Vector 4: Content contains vault secrets
+      ((and text (dispatcher-vault-scan text))
+       (let ((secret-name (dispatcher-vault-scan text)))
+         (log-message "SECURITY VIOLATION: Blocked potential leak of secret '~a'" secret-name)
+         (list :type :LOG
+               :payload (list :level :error
+                              :text (format nil "Action blocked: Potential exposure of '~a'" secret-name)))))
+
+      ;; Vector 5: Privacy-tagged content in action
+      ((and tags (dispatcher-check-privacy-tags tags))
+       (log-message "PRIVACY VIOLATION: Action contains privacy-tagged content")
+       (list :type :LOG
+             :payload (list :level :warn
+                            :text "Action blocked: Content tagged with privacy filter.")))
+
+      ;; Vector 6: Text leaks privacy tag names
+      ((and text (dispatcher-check-text-for-privacy text))
+       (log-message "PRIVACY WARNING: Text may contain leaked private content")
+       (list :type :LOG
+             :payload (list :level :warn
+                            :text "Action blocked: Text may reference private content.")))
+
+       ;; Vector 7: Shell destructive/injection patterns
+      ((and cmd (dispatcher-check-shell-safety cmd))
+       (let ((matched (dispatcher-check-shell-safety cmd)))
+         (log-message "SHELL VIOLATION: Destructive or injection pattern in command: ~a" matched)
+         (list :type :LOG
+               :payload (list :level :error
+                              :text (format nil "Shell command blocked: contains unsafe pattern ~a" matched)))))
+
+      ;; Vector 8: Network exfiltration
+      ((and (or (eq target :shell)
+                (and (eq target :tool) (equal (proto-get payload :tool) "shell")))
+            (dispatcher-check-network-exfil cmd))
+        (log-message "SECURITY WARNING: External network call detected. Queuing for approval.")
+        (list :type :EVENT :payload (list :sensor :approval-required :action action)))
+
+      ;; Vector 8: High-impact action approval
+      ((or (member target '(:shell))
+           (and (eq target :tool) (member (proto-get payload :tool) '("shell" "repair-file") :test #'string=))
+           (and (eq target :emacs) (eq (proto-get payload :action) :eval)))
+       (log-message "SECURITY: High-impact action requires approval: ~a" (or (proto-get payload :tool) target))
+       (list :type :EVENT :payload (list :sensor :approval-required :action action)))
+      (t action))))
+
+#+end_src
+
+** Approval Processing (dispatcher-approvals-process)
+#+begin_src lisp
+(defun dispatcher-approvals-process ()
+  "Scans for APPROVED flight plans and re-injects them."
+  (let ((approved-nodes (list-objects-with-attribute :TODO "APPROVED"))
+        (found-any nil))
+    (dolist (node approved-nodes)
+      (let* ((attrs (org-object-attributes node))
+             (tags (getf attrs :TAGS))
+             (action-str (getf attrs :ACTION)))
+        (when (and (member "FLIGHT_PLAN" tags :test #'string-equal) action-str)
+          (log-message "BOUNCER: Found approved flight plan '~a'. Re-injecting..." (org-object-id node))
+          (let ((action (ignore-errors (read-from-string action-str))))
+            (when action
+              (setf (getf action :approved) t)
+              (inject-stimulus action)
+              (setf (getf (org-object-attributes node) :TODO) "DONE")
+              (setq found-any t))))))
+    found-any))
+#+end_src
+
+** Flight Plan Creation (dispatcher-flight-plan-create)
+#+begin_src lisp
+(defun dispatcher-flight-plan-create (blocked-action)
+  "Creates a Flight Plan node for manual approval."
+  (let ((id (org-id-new)))
+    (log-message "BOUNCER: Creating flight plan node '~a'..." id)
+    (list :type :REQUEST :target :emacs
+          :payload (list :action :insert-node :id id
+                         :attributes (list :TITLE "Flight Plan: High-Risk Action"
+                                           :TODO "PLAN" :TAGS '("FLIGHT_PLAN")
+                                           :ACTION (format nil "~s" blocked-action))))))
+#+end_src
+
+** Gate Logic (dispatcher-gate)
+#+begin_src lisp
+(defun dispatcher-gate (action context)
+  "Main deterministic gate for the Bouncer skill."
+  (let* ((payload (getf context :payload))
+         (sensor (getf payload :sensor)))
+    (case sensor
+      (:approval-required
+       (dispatcher-flight-plan-create (getf payload :action)))
+      (:heartbeat
+       (dispatcher-approvals-process)
+       (if action (dispatcher-check action context) action))
+      (otherwise
+       (if action (dispatcher-check action context) action)))))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-security-dispatcher
+  :priority 150
+  :trigger (lambda (ctx) (declare (ignore ctx)) t)
+  :deterministic #'dispatcher-gate)
+#+end_src

org/security-permissions.org

@@ -0,0 +1,41 @@
+#+TITLE: SKILL: Tool Permissions (org-skill-tool-permissions.org)
+#+AUTHOR: Agent
+#+FILETAGS: :skill:security:permissions:
+#+PROPERTY: header-args:lisp :tangle ../lisp/security-permissions.lisp
+
+* Overview: The Authorization Matrix
+
+Every cognitive tool (file read, file write, shell execute, etc.) has a permission level: ~:allow~ (executed without asking), ~:ask~ (user is prompted before execution), or ~:deny~ (blocked entirely). Tool Permissions maintains the registry of these levels and provides the ~permission-gate-check~ that the Bouncer calls before dispatching a tool action.
+
+The default for any unregistered tool is ~:ask~ — cautious by default, permissive by configuration. This prevents a hallucinated tool call from executing without at least giving the user a chance to review it.
+
+* Implementation
+
+** Permission store (tool level)
+Hash table mapping tool names to their permission level.
+#+begin_src lisp
+(defvar *permission-table* (make-hash-table :test 'equal))
+#+end_src
+
+** Set permission
+Sets the permission level for a specific cognitive tool.
+#+begin_src lisp
+(defun permission-set (tool-name level)
+  "Sets the permission level for a tool."
+  (setf (gethash (string-downcase (string tool-name)) *permission-table*) level))
+#+end_src
+
+** Get permission
+Retrieves the current permission level for a tool. Defaults to ~:ask~ if unset.
+#+begin_src lisp
+(defun permission-get (tool-name)
+  "Retrieves the permission level for a tool. Defaults to :ask."
+  (gethash (string-downcase (string tool-name)) *permission-table* :ask))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-security-permissions
+  :priority 600
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+#+end_src

org/security-policy.org

@@ -0,0 +1,38 @@
+#+TITLE: SKILL: Policy (org-skill-policy.org)
+#+AUTHOR: Agent
+#+FILETAGS: :system:policy:constitutional:
+#+PROPERTY: header-args:lisp :tangle ../lisp/security-policy.lisp
+
+* Architectural Intent: The Constitutional Layer
+
+The Policy skill encodes the non-negotiable values of Passepartout. Every action the agent proposes must pass through this gate. If the action lacks justification, it is blocked — not because it's dangerous, but because it's opaque.
+
+This is the "Radical Transparency" invariant in practice. The agent must explain *why* it wants to do something, not just *what* it wants to do. An action with ~:explanation "Because I said so"~ is rejected. An action with ~:explanation "The user asked me to read their TODO list and summarize it"~ passes.
+
+The Policy skill is intentionally simple. It has one job: ensure every action has a meaningful explanation. Other security concerns (secret scanning, path blocking, network exfiltration) are handled by the Bouncer. The Policy is about values, not threats.
+
+* Implementation
+
+** Policy Logic (policy-compliance-check)
+#+begin_src lisp
+(defun policy-compliance-check (action context)
+  "Enforces constitutional invariants on proposed actions."
+  (declare (ignore context))
+  (let* ((payload (proto-get action :payload))
+         (explanation (proto-get payload :explanation)))
+    (if (and explanation (stringp explanation) (> (length explanation) 10))
+        action
+        (progn
+          (log-message "POLICY VIOLATION: Action lacks sufficient explanation.")
+          (list :type :LOG
+                :payload (list :level :warn
+                              :text "Action blocked: Missing or insufficient :explanation. Please justify your reasoning."))))))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(defskill :passepartout-security-policy
+  :priority 500
+  :trigger (lambda (ctx) (declare (ignore ctx)) t)
+  :deterministic #'policy-compliance-check)
+#+end_src

org/security-validator.org

@@ -1,34 +1,29 @@
 #+TITLE: SKILL: Protocol Validator (org-skill-protocol-validator.org)
 #+AUTHOR: Agent
 #+FILETAGS: :system:protocol:validation:
-#+PROPERTY: header-args:lisp :tangle org-skill-protocol-validator.lisp
+#+PROPERTY: header-args:lisp :tangle ../lisp/security-validator.lisp
 
 * Overview
-The *Protocol Validator* skill enforces strict schema compliance for all internal and external communication.
+The Protocol Validator enforces schema compliance on every message entering or leaving the cognitive pipeline. It checks that messages are valid plists, that they have the required ~:type~ and ~:payload~ fields, and that the type is one of the known types (~:REQUEST~, ~:EVENT~, ~:RESPONSE~, ~:LOG~, ~:STATUS~). This prevents malformed messages from crashing the pipeline and ensures backward compatibility when the protocol evolves.
 
 * Implementation
 
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
 ** Validation Logic
 #+begin_src lisp
-(defun protocol-validate (msg)
+(defun validator-protocol-check (msg)
   "Enforces structural schema compliance on protocol messages."
   (validate-communication-protocol-schema msg))
 #+end_src
 
 ** Skill Registration
 #+begin_src lisp
-(defskill :skill-protocol-validator
+(defskill :passepartout-security-validator
   :priority 95
   :trigger (lambda (ctx) (declare (ignore ctx)) t)
   :deterministic (lambda (action ctx)
                    (declare (ignore ctx))
                    (handler-case
-                       (progn (protocol-validate action) action)
+                       (progn (validator-protocol-check action) action)
                      (error (c)
                        (list :type :LOG :payload (list :level :error :text (format nil "Protocol Violation: ~a" c)))))))
 #+end_src

org/security-vault.org

@@ -1,18 +1,13 @@
 #+TITLE: SKILL: Credentials Vault (org-skill-credentials-vault.org)
 #+AUTHOR: Agent
 #+FILETAGS: :system:security:vault:
-#+PROPERTY: header-args:lisp :tangle org-skill-credentials-vault.lisp
+#+PROPERTY: header-args:lisp :tangle ../lisp/security-vault.lisp
 
 * Overview
 The *Credentials Vault* provides secure in-memory storage for sensitive API keys and session tokens.
 
 * Implementation
 
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
 ** Vault Storage
 #+begin_src lisp
 (defvar *vault-memory* (make-hash-table :test 'equal)
@@ -21,7 +16,7 @@ The *Credentials Vault* provides secure in-memory storage for sensitive API keys
 
 ** Secret Management
 #+begin_src lisp
-(defun vault-get-secret (provider &key (type :api-key))
+(defun vault-get (provider &key (type :api-key))
   "Retrieves a credential from the vault or environment."
   (let* ((key (format nil "~a-~a" provider type))
          (val (gethash key *vault-memory*)))
@@ -35,15 +30,30 @@ The *Credentials Vault* provides secure in-memory storage for sensitive API keys
                           (otherwise nil))))
           (when env-var (uiop:getenv env-var))))))
 
-(defun vault-set-secret (provider secret &key (type :api-key))
+(defun vault-set (provider secret &key (type :api-key))
   "Stores a secret in the vault."
   (let ((key (format nil "~a-~a" provider type)))
     (setf (gethash key *vault-memory*) secret)))
 #+end_src
 
+** Secret Wrappers (gateway-manager)
+
+Thin wrappers that match the export names used by =gateway-manager=.
+Delegates to the existing =vault-get=/=vault-set= with ~:type :secret~.
+
+#+begin_src lisp
+(defun vault-get-secret (provider)
+  "Retrieves a stored secret or token for a gateway provider."
+  (vault-get provider :type :secret))
+
+(defun vault-set-secret (provider secret)
+  "Stores a secret or token for a gateway provider."
+  (vault-set provider secret :type :secret))
+#+end_src
+
 ** Skill Registration
 #+begin_src lisp
-(defskill :skill-credentials-vault
+(defskill :passepartout-security-vault
   :priority 600
   :trigger (lambda (ctx) (declare (ignore ctx)) nil))
 #+end_src

org/setup.org

@@ -3,8 +3,16 @@
 #+FILETAGS: :harness:kernel:bootstrap:
 #+STARTUP: content
 
-* Overview
-The *Kernel Bootstrap* provides the absolute minimum logic required to transition from a raw POSIX shell to a functional Lisp environment.
+* Overview: Architectural Intent
+
+The Kernel Bootstrap is the transition from a bare POSIX shell to a running Lisp environment. It's the only part of Passepartout that executes before the Lisp image is ready.
+
+The bootstrap has exactly three jobs, nothing more:
+1. **Directory Resolution**: Locating and creating XDG paths for config, data, and state
+2. **System Tangle**: Transforming literate Org sources into runnable Lisp files
+3. **Dependency Check**: Ensuring SBCL, Quicklisp, and Emacs are available
+
+This minimal interface is deliberate. The bootstrap should NOT know about LLM providers, diagnostic suites, or gateway configuration. Those are the job of the Lisp-level setup wizard, which runs after the bootstrap is complete.
 
 * Phase A: Demand (Thinking)
 ** The Minimalist Kernel
@@ -20,11 +28,11 @@ To maintain sovereignty, the harness must remain a "dumb" bus. It should not kno
 
 * Phase C: Implementation (Build)
 
-** The Installer Script (opencortex.sh)
+** The Installer Script (passepartout)
 The shell script is the primary entry point. It handles the initial git clone, dependency installation, and literate tangle.
 
-#+begin_src bash :tangle setup.shsetup.sh
+#+begin_src bash :tangle no
 #!/bin/bash
-# (The content here is a duplicate of the main opencortex.sh for literate consistency)
+# (The content here is a duplicate of the main passepartout for literate consistency)
 # [Note: Implementation is already verified in the top-level script]
 #+end_src

org/setup.sh

@@ -0,0 +1,3 @@
+#!/bin/bash
+# (The content here is a duplicate of the main opencortex.sh for literate consistency)
+# [Note: Implementation is already verified in the top-level script]

org/system-actuator-shell.org

@@ -0,0 +1,51 @@
+#+TITLE: SKILL: Shell Actuator (org-skill-shell-actuator.org)
+#+AUTHOR: Agent
+#+FILETAGS: :skill:actuator:shell:
+#+PROPERTY: header-args:lisp :tangle ../lisp/system-actuator-shell.lisp
+
+* Overview: The Physical Actuator
+
+The Shell Actuator is the agent's hand in the physical world. Given a shell command, it executes it via ~bash -c~ and returns the output. This is how the agent installs packages, reads files, runs scripts, and interacts with any Unix tool.
+
+Because shell execution is the highest-risk operation in the system, the Shell Actuator is protected by multiple safety layers:
+1. The Bouncer's shell safety gate blocks destructive commands (~rm -rf /~, ~dd~, ~mkfs~)
+2. The Bouncer's injection gate blocks backtick and ~$()~ patterns
+3. The Bouncer's network exfil gate blocks connections to unwhitelisted hosts
+4. The actuator enforces a timeout (default 30s) so hanging commands don't freeze the agent
+5. The actuator caps output (default 100KB) so infinite output doesn't exhaust memory
+
+* Implementation
+
+** Shell Execution (actuator-shell-execute)
+#+begin_src lisp
+(defun actuator-shell-execute (action context)
+  "Executes a bash command with timeout (via timeout(1)) and output limit."
+  (declare (ignore context))
+  (let* ((payload (getf action :payload))
+         (cmd (getf payload :cmd))
+         (timeout-sym (find-symbol "*BOUNCER-SHELL-TIMEOUT*" :passepartout))
+         (timeout (or (getf payload :timeout) (if timeout-sym (symbol-value timeout-sym) 30)))
+         (max-sym (find-symbol "*BOUNCER-SHELL-MAX-OUTPUT*" :passepartout))
+         (max-output (or (getf payload :max-output) (if max-sym (symbol-value max-sym) 100000)))
+         (wrapped-cmd (format nil "timeout ~a bash -c ~s" timeout cmd)))
+    (log-message "ACT [Shell]: ~a (timeout: ~as)" cmd timeout)
+    (multiple-value-bind (out err code)
+        (uiop:run-program (list "bash" "-c" wrapped-cmd)
+                          :output :string :error-output :string
+                          :ignore-error-status t)
+      (cond
+        ((= code 124) (format nil "ERROR: Command timed out after ~a seconds" timeout))
+        ((> (length out) max-output)
+         (format nil "~a~%... (output truncated to ~a chars)" (subseq out 0 max-output) max-output))
+        ((= code 0) out)
+        (t (format nil "ERROR [~a]: ~a" code err))))))
+#+end_src
+
+** Skill Registration
+#+begin_src lisp
+(register-actuator :shell #'actuator-shell-execute)
+
+(defskill :passepartout-system-actuator-shell
+  :priority 50
+  :trigger (lambda (ctx) (declare (ignore ctx)) nil))
+#+end_src

org/system-archivist.org

@@ -0,0 +1,283 @@
+#+TITLE: SKILL: Archivist (org-skill-archivist.org)
+#+AUTHOR: Agent
+#+FILETAGS: :skill:archivist:scribe:gardener:
+#+PROPERTY: header-args:lisp :tangle ../lisp/system-archivist.lisp
+
+* Overview
+
+The *Archivist* combines the former Scribe and Gardener skills into a unified
+maintenance subsystem. It runs as a background skill triggered by heartbeat
+events, performing two core functions:
+
+- Scribe: Distills daily chronological logs into structured atomic notes with
+  backlinks, maintaining the Zettelkasten knowledge base.
+- Gardener: Scans the Memex for structural issues — broken =[[file:...]]= links
+  and orphaned =memory-object= entries — flagging them for human review.
+
+* Implementation
+
+** Archivist State
+
+#+begin_src lisp
+(defvar *archivist-last-scribe* 0
+  "Universal time of the last Scribe distillation run.")
+
+(defvar *archivist-last-gardener* 0
+  "Universal time of the last Gardener scan run.")
+
+(defvar *archivist-gardener-interval* 86400
+  "Seconds between Gardener scans. Default: 24 hours.")
+#+end_src
+
+** Scribe: Knowledge Distillation
+
+Reads daily log files from the Memex ~daily/= directory, extracts headlines
+and conceptual content, and creates atomic notes in ~notes/= with source
+backlinks. Tracks processed state via timestamp to avoid re-processing.
+
+#+begin_src lisp
+(defun archivist-scribe-distill ()
+  "Distills daily log entries into atomic notes. Reads the Memex daily/
+directory for log files modified since the last run, extracts headlines
+as potential note seeds, and creates atomic note files in notes/ with
+backlinks to the source daily entry."
+  (let* ((memex-dir (or (uiop:getenv "MEMEX_DIR")
+                        (namestring (merge-pathnames "memex/" (user-homedir-pathname)))))
+         (daily-dir (merge-pathnames "daily/" memex-dir))
+         (notes-dir (merge-pathnames "notes/" memex-dir))
+         (now (get-universal-time))
+         (notes-created 0))
+    (unless (uiop:directory-exists-p daily-dir)
+      (log-message "ARCHIVIST: Daily directory not found: ~a" daily-dir)
+      (return-from archivist-scribe-distill nil))
+    (ensure-directories-exist notes-dir)
+    (handler-case
+        (let ((daily-files (uiop:directory-files daily-dir "*.org")))
+          (dolist (file daily-files)
+            (let* ((filepath (namestring file))
+                   (file-mtime (ignore-errors (file-write-date filepath))))
+              (when (and file-mtime (> file-mtime *archivist-last-scribe*))
+                ;; Extract headlines from daily log
+                (let* ((content (handler-case (uiop:read-file-string filepath)
+                                  (error () nil)))
+                       (headlines (when content
+                                    (archivist-extract-headlines content))))
+                  (dolist (hl headlines)
+                    (when (archivist-create-note hl notes-dir filepath)
+                      (incf notes-created))))))))
+      (error (c)
+        (log-message "ARCHIVIST: Scribe error: ~a" c)))
+    (setf *archivist-last-scribe* now)
+    (when (> notes-created 0)
+      (log-message "ARCHIVIST: Scribe created ~d atomic notes" notes-created))
+    notes-created))
+
+(defun archivist-extract-headlines (content)
+  "Extracts first-level headlines and their content from Org text.
+Returns a list of plists: (:title <str> :content <str> :tags <list>)."
+  (let ((lines (uiop:split-string content :separator '(#\Newline)))
+        (results nil)
+        (current-title nil)
+        (current-lines nil)
+        (current-tags nil)
+        (in-properties nil))
+    (dolist (line lines)
+      (let ((trimmed (string-trim '(#\Space) line)))
+        (when (string= trimmed ":PROPERTIES:")
+          (setf in-properties t))
+        (when (string= trimmed ":END:")
+          (setf in-properties nil))
+        (when (and in-properties (uiop:string-prefix-p ":TAGS:" trimmed))
+          (setf current-tags
+                (mapcar (lambda (t) (string-trim '(#\Space) t))
+                        (uiop:split-string (string-trim '(#\Space) (subseq trimmed 6))
+                                           :separator '(#\space #\tab)))))
+        (cond
+          ;; First-level headline
+          ((and (uiop:string-prefix-p "* " trimmed)
+                (not (uiop:string-prefix-p "**" trimmed)))
+           ;; Save previous
+           (when current-title
+             (push (list :title current-title
+                         :content (format nil "~{~a~^~%~}" (nreverse current-lines))
+                         :tags current-tags)
+                   results))
+           (setf current-title (string-trim '(#\* #\Space) trimmed)
+                 current-lines nil
+                 current-tags nil
+                 in-properties nil))
+          ;; Content lines under current headline
+          (current-title
+           (unless (or (uiop:string-prefix-p "*" trimmed)
+                       (string= trimmed ":PROPERTIES:")
+                       (string= trimmed ":END:"))
+             (push line current-lines))))))
+    ;; Save last headline
+    (when current-title
+      (push (list :title current-title
+                  :content (format nil "~{~a~^~%~}" (nreverse current-lines))
+                  :tags current-tags)
+            results))
+    (nreverse results)))
+
+(defun archivist-headline-to-filename (title)
+  "Converts a headline title to a valid atomic note filename.
+Replaces spaces and special chars with underscores, downcases."
+  (let* ((clean (cl-ppcre:regex-replace-all "[^a-zA-Z0-9 ]" title ""))
+         (underscored (cl-ppcre:regex-replace-all "\\s+" clean "_"))
+         (lowered (string-downcase underscored)))
+    (if (> (length lowered) 100)
+        (subseq lowered 0 100)
+        lowered)))
+
+(defun archivist-create-note (headline notes-dir source-filepath)
+  "Creates an atomic note from a headline plist in the notes/ directory.
+Headline is a plist (:title <str> :content <str> :tags <list>).
+Returns T if note was created, nil if it already exists."
+  (let* ((title (getf headline :title))
+         (content (or (getf headline :content) ""))
+         (tags (getf headline :tags))
+         (filename (archivist-headline-to-filename title))
+         (filepath (merge-pathnames (format nil "~a.org" filename) notes-dir))
+         (source-basename (enough-namestring source-filepath
+                                             (merge-pathnames "" notes-dir))))
+    (when (uiop:file-exists-p filepath)
+      (return-from archivist-create-note nil))
+    (handler-case
+        (uiop:with-output-file (s filepath :if-exists :nil)
+          (format s "#+TITLE: ~a~%" title)
+          (format s "#+FILETAGS: :atomic:note:~:[~;~{~a~^:~}~]~%" tags tags)
+          (format s "~%* ~a~%" title)
+          (format s ":PROPERTIES:~%")
+          (format s ":CREATED: ~a~%" (org-id-generate))
+          (format s ":SOURCE: ~a~%" source-basename)
+          (format s ":END:~%")
+          (format s "~%~a~%" content)
+          (format s "~%* Backlinks~%")
+          (format s "- Source: [[file:~a][~a]]~%" source-basename
+                  (file-namestring source-filepath)))
+      (log-message "ARCHIVIST: Created note ~a" (namestring filepath))
+      t)
+    (error (c)
+      (log-message "ARCHIVIST: Failed to create note ~a: ~a" filepath c)
+      nil)))
+#+end_src
+
+** Gardener: Structural Maintenance
+
+Scans the Memex for broken =[[file:...]]= links and orphaned =memory-object=
+entries. Flags issues with =:GARDENER:= tags for human review.
+
+#+begin_src lisp
+(defun archivist-gardener-scan ()
+  "Scans the Memex for broken file links and orphaned memory objects.
+Broken links are =[[file:...]]= references whose target file does not exist.
+Orphaned objects are =memory-object= entries whose =:parent-id= references
+a deleted object. Returns a plist (:broken-links <count> :orphans <count>)."
+  (let* ((memex-dir (or (uiop:getenv "MEMEX_DIR")
+                        (namestring (merge-pathnames "memex/" (user-homedir-pathname)))))
+         (org-files (archivist-find-org-files memex-dir))
+         (broken-links 0)
+         (orphans 0))
+    ;; Scan for broken links
+    (dolist (file org-files)
+      (handler-case
+          (let* ((content (uiop:read-file-string file))
+                 (links (archivist-extract-file-links content)))
+            (dolist (link links)
+              (let ((target (merge-pathnames link (make-pathname :directory
+                                  (pathname-directory file)))))
+                (unless (uiop:file-exists-p target)
+                  (log-message "ARCHIVIST: Broken link in ~a -> ~a"
+                               (enough-namestring file memex-dir) link)
+                  (incf broken-links)))))
+        (error ()
+          (log-message "ARCHIVIST: Could not read ~a" file))))
+    ;; Scan for orphaned memory objects
+    (handler-case
+        (let ((deleted-ids (make-hash-table :test 'equal)))
+          ;; In practice, we check if parent-id points to a non-existent object
+          (maphash (lambda (id obj)
+                     (declare (ignore obj))
+                     (setf (gethash id deleted-ids) t))
+                   (if (boundp '*memory-store*)
+                       (symbol-value '*memory-store*)
+                       (make-hash-table :test 'equal)))
+          (let ((store (if (boundp '*memory-store*)
+                           (symbol-value '*memory-store*)
+                           (make-hash-table :test 'equal))))
+            (maphash (lambda (id obj)
+                       (let ((parent (memory-object-parent-id obj)))
+                         (when (and parent (not (gethash parent store)))
+                           (log-message "ARCHIVIST: Orphaned object ~a (parent ~a not found)"
+                                        id parent)
+                           (incf orphans))))
+                     store)))
+      (error ()
+        (log-message "ARCHIVIST: Memory store not available for orphan scan")))
+    (setf *archivist-last-gardener* (get-universal-time))
+    (list :broken-links broken-links :orphans orphans)))
+
+(defun archivist-find-org-files (memex-dir)
+  "Recursively finds all .org files under memex-dir, up to 3 levels deep."
+  (let ((files nil))
+    (labels ((walk (dir depth)
+               (when (and (uiop:directory-exists-p dir) (< depth 3))
+                 (handler-case
+                     (dolist (entry (uiop:subdirectories dir))
+                       (walk entry (1+ depth)))
+                   (error ()))
+                 (handler-case
+                     (dolist (file (uiop:directory-files dir "*.org"))
+                       (push (namestring file) files))
+                   (error ())))))
+      (walk memex-dir 0))
+    files))
+
+(defun archivist-extract-file-links (content)
+  "Extracts all =[[file:...]]= link targets from Org content.
+Returns a list of link target strings."
+  (let ((links nil))
+    (cl-ppcre:do-register-groups (target)
+        ("\\[\\[file:([^\\]]+)\\]\\[" content)
+      (unless (search "::" target)  ;; skip internal anchors
+        (pushnew target links :test #'string=)))
+    ;; Also handle bare [[file:target]] links
+    (cl-ppcre:do-register-groups (target)
+        ("\\[\\[file:([^\\]]+)\\]\\]" content)
+      (unless (search "::" target)
+        (pushnew target links :test #'string=)))
+    links))
+#+end_src
+
+** Archivist Runner
+
+Triggered by heartbeat events, runs Scribe and Gardener on alternating schedules.
+
+#+begin_src lisp
+(defun archivist-run (context)
+  "Runs the archivist maintenance cycle. Checks Scribe and Gardener schedules
+and dispatches as needed. Called by the deterministic gate."
+  (declare (ignore context))
+  (let ((now (get-universal-time)))
+    ;; Scribe runs every 6 hours (21600 seconds)
+    (when (>= (- now *archivist-last-scribe*) 21600)
+      (ignore-errors (archivist-scribe-distill)))
+    ;; Gardener runs every 24 hours
+    (when (>= (- now *archivist-last-gardener*) *archivist-gardener-interval*)
+      (ignore-errors
+        (let ((result (archivist-gardener-scan)))
+          (when (> (getf result :broken-links) 0)
+            (log-message "ARCHIVIST: Gardener found ~d broken links, ~d orphans"
+                         (getf result :broken-links) (getf result :orphans)))))))
+  nil)
+#+end_src
+
+** Skill Registration
+
+#+begin_src lisp
+(defskill :passepartout-system-archivist
+  :priority 100
+  :trigger (lambda (ctx) (eq (getf (getf ctx :payload) :sensor) :heartbeat))
+  :deterministic #'archivist-run)
+#+end_src

org/system-config.org

@@ -1,44 +1,43 @@
 #+TITLE: SKILL: Config Manager (org-skill-config-manager.org)
 #+AUTHOR: Agent
 #+FILETAGS: :skill:setup:config:
-#+PROPERTY: header-args:lisp :tangle org-skill-config-manager.lisp
+#+PROPERTY: header-args:lisp :tangle ../lisp/system-config.lisp
 
 * Overview
-The *Config Manager* skill provides the OpenCortex Agent with the capability to manage its own environment variables and provider configurations. It includes an interactive setup wizard for LLM providers, gateways, and system settings.
+The *Config Manager* skill provides the Passepartout Agent with the capability to manage its own environment variables and provider configurations. It includes an interactive setup wizard for LLM providers, gateways, and system settings.
 
 * Implementation
 
-** Package Context
+** Configuration directory (config-directory)
+Resolves the XDG config directory for Passepartout.
 #+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
-** Configuration Paths
-#+begin_src lisp
-(defun get-oc-config-dir ()
+(defun config-directory ()
   "Returns the absolute path to the opencortex config directory."
   (let ((xdg (uiop:getenv "OC_CONFIG_DIR")))
-    (if (and xdg (string/= xdg ""))
-        (uiop:ensure-directory-pathname xdg)
-        (uiop:ensure-directory-pathname (merge-pathnames ".config/opencortex/" (user-homedir-pathname))))))
+    (if xdg xdg (namestring (merge-pathnames ".config/passepartout/" (user-homedir-pathname))))))
+#+end_src
 
-(defun get-config-file ()
-  "Returns the path to the .env config file."
-  (merge-pathnames ".env" (get-oc-config-dir)))
+** Config file path (config-file-path)
+Returns the path to the ~.env~ file within the config directory.
+#+begin_src lisp
+(defun config-file-path ()
+  "Returns the path to the .env configuration file."
+  (merge-pathnames ".env" (config-directory)))
+#+end_src
 
-(defun ensure-config-dir ()
-  "Ensures the config directory exists."
-  (let ((dir (get-oc-config-dir)))
-    (unless (uiop:directory-exists-p dir)
-      (uiop:ensure-directory-pathname dir))
-    dir))
+** Ensure config directory (config-directory-ensure)
+Creates the config directory tree if it does not exist.
+#+begin_src lisp
+(defun config-directory-ensure ()
+  "Creates the configuration directory if it does not exist."
+  (ensure-directories-exist (config-directory)))
 #+end_src
 
 ** Config File Operations
 #+begin_src lisp
-(defun read-config-file ()
+(defun config-read ()
   "Reads the .env config file and returns an alist of KEY=VALUE pairs."
-  (let ((config-file (get-config-file)))
+  (let ((config-file (config-file-path)))
     (when (uiop:file-exists-p config-file)
       (let ((lines (uiop:read-file-lines config-file))
             (result nil))
@@ -52,30 +51,30 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
                   (push (cons key value) result))))))
         (nreverse result)))))
 
-(defun write-config-file (config-alist)
+(defun config-write (config-alist)
   "Writes the config alist to the .env file."
-  (ensure-config-dir)
-  (let ((config-file (get-config-file)))
+  (config-directory-ensure)
+  (let ((config-file (config-file-path)))
     (with-open-file (stream config-file :direction :output :if-exists :supersede :if-does-not-exist :create)
-      (format stream "# OpenCortex Configuration~%")
+      (format stream "# Passepartout Configuration~%")
       (format stream "# Generated by opencortex setup~%~%")
       (dolist (pair config-alist)
         (format stream "~a=~a~%" (car pair) (cdr pair))))))
 
-(defun get-config-value (key)
+(defun config-get (key)
   "Gets a config value by key."
-  (let ((config (read-config-file)))
+  (let ((config (config-read)))
     (cdr (assoc key config :test #'string=))))
 
-(defun set-config-value (key value)
+(defun config-set (key value)
   "Sets a config value and saves to file."
-  (let ((config (read-config-file))
+  (let ((config (config-read))
         (pair (cons key value)))
     (let ((existing (assoc key config :test #'string=)))
       (if existing
           (setf (cdr existing) value)
-          (push pair config)))
-      (write-config-file config))))
+          (push pair config))
+      (config-write config))))
 #+end_src
 
 ** Input Utilities
@@ -109,7 +108,7 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
 
 ** LLM Provider Setup
 #+begin_src lisp
-(defvar *available-providers*
+(defparameter *available-providers*
   '(("OpenAI" . "OPENAI_API_KEY")
     ("Anthropic" . "ANTHROPIC_API_KEY")
     ("OpenRouter" . "OPENROUTER_API_KEY")
@@ -125,7 +124,7 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
   (format t "==================================================~%~%")
   
   (let ((current-providers (loop for (name . key) in *available-providers*
-                                when (get-config-value key)
+                                when (config-get key)
                                 collect name)))
     (when current-providers
       (format t "Current providers: ~{~a~^, ~}~%~%" current-providers))
@@ -138,18 +137,18 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
     (when (prompt-yes-no "Configure a new provider?")
       (let ((chosen (prompt-choice "Select provider:" (mapcar #'car *available-providers*))))
         (when chosen
-          (let ((env-key (cdr (assoc chosen *available-providers* :test #'string= :key #'car))))
+          (let ((env-key (cdr (assoc chosen *available-providers* :test #'string=))))
             (if (string= chosen "Ollama (local)")
                 (progn
                   (format t "Enter Ollama URL (e.g., http://localhost:11434): ")
                   (let ((url (read-line)))
-                    (set-config-value env-key url)
-                    (format t "✓ Ollama configured at ~a~%" url))))
+                    (config-set env-key url)
+                    (format t "✓ Ollama configured at ~a~%" url)))
                 (progn
                   (format t "Enter API key for ~a: " chosen)
                   (let ((key (read-line)))
-                    (set-config-value env-key key)
-                    (format t "✓ ~a API key saved~%" chosen)))))))))))
+                    (config-set env-key key)
+                    (format t "✓ ~a API key saved~%" chosen)))))))))
   
   (format t "~%"))
 
@@ -177,9 +176,9 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
       (when chosen
         (let ((token (prompt (format nil "Enter ~a bot token: " chosen))))
           (if (string= chosen "Slack")
-              (set-config-value "SLACK_TOKEN" token)
-              (set-config-value "DISCORD_TOKEN" token))
-          (format t "✓ ~a gateway configured~%" chosen))))))
+              (config-set "SLACK_TOKEN" token)
+              (config-set "DISCORD_TOKEN" token))
+          (format t "✓ ~a gateway configured~%" chosen)))))
   
   (format t "~%"))
 #+end_src
@@ -194,7 +193,7 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
   (format t "==================================================~%~%")
   
   (format t "Note: Skill management is not yet implemented.~%")
-  (format t "Skills are automatically loaded from ~a~%" (or (uiop:getenv "SKILLS_DIR") "default location"))
+  (format t "Skills are automatically loaded from ~a~%" (or (uiop:getenv "PASSEPARTOUT_DATA_DIR") "~/.local/share/passepartout"))
   (format t "~%"))
 #+end_src
 
@@ -209,11 +208,11 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
   
   (let ((auto-save (prompt "Auto-save interval in seconds [300]:")))
     (when (and auto-save (> (length auto-save) 0))
-      (set-config-value "MEMORY_AUTO_SAVE_INTERVAL" auto-save)))
+      (config-set "MEMORY_AUTO_SAVE_INTERVAL" auto-save)))
   
   (let ((history (prompt "History retention in lines [1000]:")))
     (when (and history (> (length history) 0))
-      (set-config-value "MEMORY_HISTORY_RETENTION" history)))
+      (config-set "MEMORY_HISTORY_RETENTION" history)))
   
   (format t "✓ Memory settings saved~%")
   (format t "~%"))
@@ -230,11 +229,11 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
   
   (let ((timeout (prompt "Request timeout in seconds [30]:")))
     (when (and timeout (> (length timeout) 0))
-      (set-config-value "REQUEST_TIMEOUT" timeout)))
+      (config-set "REQUEST_TIMEOUT" timeout)))
   
   (let ((proxy (prompt "Proxy URL (leave empty for none) []:")))
     (when (and proxy (> (length proxy) 0))
-      (set-config-value "HTTP_PROXY" proxy)))
+      (config-set "HTTP_PROXY" proxy)))
   
   (format t "✓ Network settings saved~%")
   (format t "~%"))
@@ -242,11 +241,11 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
 
 ** Main Setup Wizard
 #+begin_src lisp
-(defun run-setup-wizard ()
+(defun setup-wizard-run ()
   "Main entry point for the interactive setup wizard."
   (format t "~%~%")
   (format t "╔═══════════════════════════════════════════════════╗~%")
-  (format t "║         OpenCortex Setup Wizard                   ║~%")
+  (format t "║         Passepartout Setup Wizard                   ║~%")
   (format t "╚═══════════════════════════════════════════════════╝~%")
   (format t "~%")
   (format t "This wizard will help you configure:~%")
@@ -256,7 +255,7 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
   (format t "  4. Network Settings~%")
   (format t "~%")
   
-  (ensure-config-dir)
+  (config-directory-ensure)
   
   ;; Step 1: LLM Providers
   (when (prompt-yes-no "Configure LLM providers?")
@@ -279,15 +278,15 @@ The *Config Manager* skill provides the OpenCortex Agent with the capability to
   (format t " Setup Complete!~%")
   (format t "==================================================~%")
   (format t "~%")
-  (format t "Configuration saved to: ~a~%" (get-config-file))
+  (format t "Configuration saved to: ~a~%" (config-file-path))
   (format t "~%")
-  (format t "To verify your setup, run: opencortex doctor~%")
+  (format t "To verify your setup, run: passepartout doctor~%")
   (format t "~%"))
 #+end_src
 
 ** Skill Registration
 #+begin_src lisp
-(defskill :skill-config-manager
+(defskill :passepartout-system-config
   :priority 100
   :trigger (lambda (ctx) (declare (ignore ctx)) nil))
 #+end_src

org/system-diagnostics.org

@@ -1,10 +1,11 @@
 #+TITLE: SKILL: Diagnostics (org-skill-diagnostics.org)
 #+AUTHOR: Agent
 #+FILETAGS: :system:diagnostics:doctor:
-#+PROPERTY: header-args:lisp :tangle org-skill-diagnostics.lisp
+#+PROPERTY: header-args:lisp :tangle ../lisp/system-diagnostics.lisp
 
-* Overview
-The *Diagnostics Skill* (Doctor) provides system-wide health checks and dependency verification. It validates external dependencies, XDG environment, and LLM provider connectivity.
+* Why a Doctor?
+
+The Diagnostics skill is the self-knowledge of Passepartout. It answers "Is everything working?" by checking dependencies, environment variables, and LLM connectivity. Unlike the harness-level Doctor (which runs at boot and on CLI demand), this skill provides the Lisp-level diagnostic functions — defining what "healthy" means: which binaries must be present, which directories must exist, which API keys should be configured.
 
 * Phase A: Demand (Thinking)
 ** Why a Doctor?
@@ -20,17 +21,12 @@ Binary detection must use shell probing (`which`) to account for varying `$PATH`
 
 * Phase C: Implementation (Build)
 
-** Package Context
-#+begin_src lisp
-(in-package :opencortex)
-#+end_src
-
 ** Global Configuration
 #+begin_src lisp
-(defvar *doctor-required-binaries* '("sbcl" "emacs" "git" "socat" "nc")
+(defvar *diagnostics-binaries* '("sbcl" "emacs" "git" "socat" "nc")
   "List of external binaries required for full system operation.")
 
-(defvar *doctor-package-map*
+(defvar *diagnostics-package-map*
   '(("sbcl" . "sbcl")
     ("emacs" . "emacs")
     ("git" . "git")
@@ -41,7 +37,7 @@ Binary detection must use shell probing (`which`) to account for varying `$PATH`
   "Map binary names to apt package names.")
 
 (defvar *doctor-missing-deps* nil
-  "List of missing dependencies populated by doctor-check-dependencies.")
+  "List of missing dependencies populated by diagnostics-dependencies-check.")
 
 (defvar *doctor-auto-install* t
   "When T, doctor will attempt to install missing dependencies automatically.")
@@ -49,12 +45,12 @@ Binary detection must use shell probing (`which`) to account for varying `$PATH`
 
 ** Dependency Verification
 #+begin_src lisp
-(defun doctor-check-dependencies ()
+(defun diagnostics-dependencies-check ()
   "Verifies that required external binaries are available in the PATH via shell probe."
   (setf *doctor-missing-deps* nil)
   (let ((all-ok t))
     (format t "DOCTOR: Checking system dependencies...~%")
-    (dolist (dep *doctor-required-binaries*)
+    (dolist (dep *diagnostics-binaries*)
       (let ((path (ignore-errors
                     (uiop:run-program (list "which" dep)
                                       :output :string :ignore-error-status t))))
@@ -71,17 +67,17 @@ Binary detection must use shell probing (`which`) to account for varying `$PATH`
 
 ** Auto-Install Dependencies
 #+begin_src lisp
-(defun doctor-install-dependencies ()
+(defun diagnostics-dependencies-install ()
   "Attempts to install missing system dependencies via apt."
   (when (null *doctor-missing-deps*)
     (format t "DOCTOR: No missing dependencies to install.~%")
-    (return-from doctor-install-dependencies t))
+    (return-from diagnostics-dependencies-install t))
 
   (format t "DOCTOR: Attempting to install ~a missing dependencies...~%" (length *doctor-missing-deps*))
 
   (let ((packages (remove-duplicates
                    (mapcar (lambda (dep)
-                             (or (cdr (assoc dep *doctor-package-map* :test #'string=))
+                             (or (cdr (assoc dep *diagnostics-package-map* :test #'string=))
                                  dep))
                            *doctor-missing-deps*)
                    :test #'string=)))
@@ -110,13 +106,13 @@ Binary detection must use shell probing (`which`) to account for varying `$PATH`
 
 ** XDG Environment Validation
 #+begin_src lisp
-(defun doctor-check-env ()
+(defun diagnostics-env-check ()
   "Validates XDG directories and environment configuration."
   (format t "DOCTOR: Checking XDG environment...~%")
   (let ((all-ok t)
-        (config-dir (uiop:getenv "OC_CONFIG_DIR"))
-        (data-dir (uiop:getenv "OC_DATA_DIR"))
-        (state-dir (uiop:getenv "OC_STATE_DIR"))
+        (config-dir (uiop:getenv "PASSEPARTOUT_CONFIG_DIR"))
+        (data-dir (uiop:getenv "PASSEPARTOUT_DATA_DIR"))
+        (state-dir (uiop:getenv "PASSEPARTOUT_STATE_DIR"))
         (memex-dir (uiop:getenv "MEMEX_DIR")))
 
     (flet ((check-dir (name path critical)
@@ -130,9 +126,9 @@ Binary detection must use shell probing (`which`) to account for varying `$PATH`
                    (format t "  [FAIL] ~a variable not set.~%" name)
                    (when critical (setf all-ok nil))))))
 
-      (check-dir "Config (OC_CONFIG_DIR)" config-dir t)
-      (check-dir "Data (OC_DATA_DIR)" data-dir t)
-      (check-dir "State (OC_STATE_DIR)" state-dir t)
+      (check-dir "Config (PASSEPARTOUT_CONFIG_DIR)" config-dir t)
+      (check-dir "Data (PASSEPARTOUT_DATA_DIR)" data-dir t)
+      (check-dir "State (PASSEPARTOUT_STATE_DIR)" state-dir t)
       (check-dir "Memex (MEMEX_DIR)" memex-dir t))
     all-ok))
 #+end_src
@@ -141,15 +137,17 @@ Binary detection must use shell probing (`which`) to account for varying `$PATH`
 The doctor checks all supported LLM providers and detects local Ollama instances.
 
 #+begin_src lisp
-(defun doctor-check-llm ()
+(defun diagnostics-llm-check ()
   "Tests connectivity to LLM providers. Returns T if at least one provider is configured."
   (format t "DOCTOR: Checking LLM connectivity...~%")
   (let ((providers '((:openrouter . "OPENROUTER_API_KEY")
-                    (:anthropic . "ANTHROPIC_API_KEY")
-                    (:openai . "OPENAI_API_KEY")
-                    (:groq . "GROQ_API_KEY")
-                    (:gemini . "GEMINI_API_KEY")
-                    (:ollama . "OLLAMA_URL")))
+                     (:anthropic . "ANTHROPIC_API_KEY")
+                     (:openai . "OPENAI_API_KEY")
+                     (:groq . "GROQ_API_KEY")
+                     (:gemini . "GEMINI_API_KEY")
+                     (:deepseek . "DEEPSEEK_API_KEY")
+                     (:nvidia . "NVIDIA_API_KEY")
+                     (:ollama . "OLLAMA_URL")))
         (configured nil))
     (dolist (p providers)
       (let ((env-val (uiop:getenv (cdr p))))
@@ -170,25 +168,25 @@ The doctor checks all supported LLM providers and detects local Ollama instances
           t)
         (progn
           (format t "  [WARN] No LLM provider configured.~%")
-          (format t "  Run 'opencortex setup' to configure a provider.~%")
+          (format t "  Run 'passepartout configure' to configure a provider.~%")
           t))))
 #+end_src
 
 ** Orchestration
 #+begin_src lisp
-(defun doctor-run-all (&key (auto-install t))
+(defun diagnostics-run-all (&key (auto-install t))
   "Executes the full diagnostic suite and returns T if system is healthy."
   (format t "==================================================~%")
-  (format t " OPENCORTEX DOCTOR: Commencing Health Check~%")
+  (format t " PASSEPARTOUT DOCTOR: Commencing Health Check~%")
   (format t "==================================================~%")
-  (let ((dep-ok (doctor-check-dependencies)))
+  (let ((dep-ok (diagnostics-dependencies-check)))
     (when (and (not dep-ok) auto-install *doctor-auto-install*)
       (format t "DOCTOR: Attempting automatic installation...~%")
-      (setf dep-ok (doctor-install-dependencies))
+      (setf dep-ok (diagnostics-dependencies-install))
       (when dep-ok
-        (setf dep-ok (doctor-check-dependencies))))
-    (let ((env-ok (doctor-check-env))
-          (llm-ok (doctor-check-llm)))
+        (setf dep-ok (diagnostics-dependencies-check))))
+    (let ((env-ok (diagnostics-env-check))
+          (llm-ok (diagnostics-llm-check)))
       (format t "==================================================~%")
       (if (and dep-ok env-ok)
           (progn
@@ -203,17 +201,17 @@ The doctor checks all supported LLM providers and detects local Ollama instances
               (format t "  - No LLM provider configured~%"))
             (format t "~%")
             (format t " RECOMMENDED ACTIONS:~%")
-            (format t "  1. Run 'opencortex setup' to configure everything~%")
-            (format t "  2. Or run 'opencortex doctor --fix' for auto-repair~%")
+            (format t "  1. Run 'passepartout configure' to configure everything~%")
+            (format t "  2. Or run 'passepartout doctor --fix' for auto-repair~%")
             (format t "==================================================~%")
             nil)))))  ;; Return nil when issues found
 #+end_src
 
 ** CLI Entry Point
 #+begin_src lisp
-(defun doctor-main ()
+(defun diagnostics-main ()
   "Entry point for the 'doctor' CLI command."
-  (if (doctor-run-all)
+  (if (diagnostics-run-all)
       (uiop:quit 0)
       (uiop:quit 1)))
 #+end_src
@@ -224,8 +222,8 @@ The doctor checks all supported LLM providers and detects local Ollama instances
 #+begin_src lisp :tangle no
 (test test-doctor-dependency-check
   "Verify that missing binaries are correctly identified as failures."
-  (let ((opencortex::*doctor-required-binaries* '("non-existent-binary-123")))
-    (is (null (opencortex:doctor-check-dependencies)))))
+  (let ((passepartout::*diagnostics-binaries* '("non-existent-binary-123")))
+    (is (null (passepartout:diagnostics-dependencies-check)))))
 #+end_src
 
 ** Environment Test
@@ -236,7 +234,7 @@ The doctor checks all supported LLM providers and detects local Ollama instances
     (unwind-protect
          (progn
            (setf (uiop:getenv "MEMEX_DIR") "/non/existent/path/999")
-           (is (null (opencortex:doctor-check-env))))
+           (is (null (passepartout:diagnostics-env-check))))
       (setf (uiop:getenv "MEMEX_DIR") (or old-m "")))))
 #+end_src
 
@@ -245,7 +243,7 @@ The doctor skill should be loaded early (priority 100) to validate system health
 
 ** Skill Registration
 #+begin_src lisp
-(defskill :skill-diagnostics
+(defskill :passepartout-system-diagnostics
   :priority 100
   :trigger (lambda (ctx) (eq (getf (getf ctx :payload) :sensor) :heartbeat))
   :deterministic (lambda (action ctx) (declare (ignore action ctx)) nil))